Wall clock time and date at job start Mon Mar 30 2020 01:11:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.47207 * 179.97438 * 2 1 4 4 N 1.46503 * 109.47088 * 14.95888 * 3 2 1 5 5 C 1.36970 * 119.99985 * 261.80647 * 4 3 2 6 6 H 1.08005 * 120.00195 * 197.60919 * 5 4 3 7 7 C 1.38971 * 120.00476 * 17.60015 * 5 4 3 8 8 N 1.31422 * 119.99690 * 12.82756 * 7 5 4 9 9 Si 1.86797 * 120.00548 * 192.82914 * 7 5 4 10 10 H 1.48499 * 109.46792 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47342 * 119.99764 * 9 7 5 12 12 H 1.48502 * 109.47139 * 240.00324 * 9 7 5 13 13 C 1.34773 * 119.99780 * 81.80196 * 4 3 2 14 14 O 1.21663 * 119.99949 * 181.64571 * 13 4 3 15 15 C 1.47184 * 120.00330 * 1.64785 * 13 4 3 16 16 C 1.46711 * 127.01654 * 351.05067 * 15 13 4 17 17 C 1.34444 * 106.39020 * 179.97438 * 16 15 13 18 18 N 1.36430 * 109.08712 * 359.97438 * 17 16 15 19 19 H 0.96994 * 124.82057 * 180.02562 * 18 17 16 20 20 C 1.34704 * 110.36028 * 359.97438 * 18 17 16 21 21 C 1.50694 * 125.90009 * 180.26273 * 20 18 17 22 22 C 1.53784 * 113.61657 * 37.19056 * 21 20 18 23 23 C 1.53779 * 87.08295 * 220.01920 * 22 21 20 24 24 C 1.53777 * 87.08044 * 25.43309 * 23 22 21 25 25 H 4.40649 * 5.51379 * 180.02562 * 4 1 2 26 26 H 1.09000 * 109.46735 * 254.96247 * 3 2 1 27 27 H 1.09000 * 109.46953 * 134.95661 * 3 2 1 28 28 H 0.96998 * 120.00193 * 179.97438 * 8 7 5 29 29 H 1.08001 * 126.80413 * 359.95887 * 16 15 13 30 30 H 1.08004 * 125.46037 * 180.02562 * 17 16 15 31 31 H 1.09003 * 112.85553 * 168.49906 * 21 20 18 32 32 H 1.08995 * 113.61192 * 334.57156 * 22 21 20 33 33 H 1.09003 * 113.61446 * 105.46864 * 22 21 20 34 34 H 1.09004 * 113.61546 * 270.88175 * 23 22 21 35 35 H 1.09002 * 113.61315 * 139.98089 * 23 22 21 36 36 H 1.09009 * 113.61227 * 220.01653 * 24 23 22 37 37 H 1.08997 * 113.69337 * 89.12774 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1349 -1.3336 -0.3565 5 6 3.5230 -2.2058 0.6256 6 1 4.1377 -3.0587 0.3784 7 6 3.1259 -1.9933 1.9404 8 7 2.1842 -1.1168 2.2088 9 14 3.9306 -2.9535 3.3260 10 1 4.9536 -3.8711 2.7633 11 1 4.5784 -2.0092 4.2714 12 1 2.8991 -3.7439 4.0446 13 6 3.2028 -1.7027 -1.6510 14 8 3.5804 -2.8211 -1.9456 15 6 2.8201 -0.7529 -2.7082 16 6 2.1776 0.5541 -2.5310 17 6 2.0179 1.0684 -3.7629 18 7 2.5089 0.1871 -4.6814 19 1 2.5092 0.3298 -5.6408 20 6 2.9941 -0.9088 -4.0666 21 6 3.6228 -2.0978 -4.7462 22 6 4.4841 -1.7266 -5.9649 23 6 3.8965 -2.9665 -6.6592 24 6 2.6817 -2.8146 -5.7287 25 1 -1.0499 -0.0003 -0.0003 26 1 3.0092 0.2675 0.9925 27 1 3.0090 0.7269 -0.7272 28 1 1.9068 -0.9687 3.1264 29 1 1.8898 1.0122 -1.5963 30 1 1.5730 2.0262 -3.9892 31 1 4.1196 -2.7710 -4.0476 32 1 4.1953 -0.7858 -6.4334 33 1 5.5560 -1.7967 -5.7797 34 1 4.4693 -3.8773 -6.4844 35 1 3.6628 -2.8078 -7.7120 36 1 2.2983 -3.7633 -5.3528 37 1 1.8991 -2.1717 -6.1316 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491702540.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:05 Heat of formation + Delta-G solvation = 119.814766 kcal Electronic energy + Delta-G solvation = -20942.956731 eV Core-core repulsion = 17882.875567 eV Total energy + Delta-G solvation = -3060.081164 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.88000 -38.22403 -37.79001 -35.05048 -32.35796 -31.06087 -30.16402 -29.18797 -26.38972 -25.49500 -25.31982 -24.15149 -21.46733 -20.54407 -19.23506 -18.11088 -17.63222 -17.44819 -16.38266 -15.35359 -15.26733 -14.41477 -14.20803 -14.05198 -13.97766 -13.56442 -13.32645 -12.68907 -12.41818 -12.36467 -12.05091 -11.95053 -11.68539 -11.43452 -11.11779 -10.74826 -10.55790 -10.30488 -10.28525 -10.19942 -10.04103 -9.31028 -9.22291 -8.76865 -8.29500 -8.09051 -7.73683 -7.51241 -6.20062 -3.74699 2.45777 3.02570 3.25718 3.30965 3.37456 3.61788 3.89724 4.14957 4.27628 4.58481 4.73098 4.81091 4.85786 5.17232 5.23468 5.28838 5.45222 5.47704 5.66852 5.69039 5.75192 5.94081 6.00091 6.06949 6.11247 6.16701 6.28799 6.46101 6.49659 6.67452 6.85113 7.04447 7.20869 7.39175 7.51978 7.64337 7.93271 8.23766 8.59740 8.91995 9.27186 9.51343 10.12531 10.78864 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.022229 B = 0.006119 C = 0.005097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.299146 B = 4574.652853 C = 5492.073780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.272 4.272 2 C -0.100 4.100 3 C 0.210 3.790 4 N -0.434 5.434 5 C -0.299 4.299 6 H 0.104 0.896 7 C 0.024 3.976 8 N -0.874 5.874 9 Si 0.926 3.074 10 H -0.269 1.269 11 H -0.281 1.281 12 H -0.283 1.283 13 C 0.522 3.478 14 O -0.593 6.593 15 C -0.190 4.190 16 C -0.184 4.184 17 C -0.036 4.036 18 N -0.555 5.555 19 H 0.404 0.596 20 C 0.083 3.917 21 C -0.042 4.042 22 C -0.140 4.140 23 C -0.140 4.140 24 C -0.133 4.133 25 H 0.197 0.803 26 H 0.120 0.880 27 H 0.078 0.922 28 H 0.266 0.734 29 H 0.164 0.836 30 H 0.160 0.840 31 H 0.136 0.864 32 H 0.069 0.931 33 H 0.071 0.929 34 H 0.083 0.917 35 H 0.063 0.937 36 H 0.073 0.927 37 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.351 5.284 -12.733 13.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.291 4.291 2 C -0.102 4.102 3 C 0.087 3.913 4 N -0.151 5.151 5 C -0.427 4.427 6 H 0.122 0.878 7 C -0.178 4.178 8 N -0.513 5.513 9 Si 0.753 3.247 10 H -0.193 1.193 11 H -0.207 1.207 12 H -0.209 1.209 13 C 0.313 3.687 14 O -0.480 6.480 15 C -0.200 4.200 16 C -0.208 4.208 17 C -0.163 4.163 18 N -0.150 5.150 19 H 0.240 0.760 20 C -0.033 4.033 21 C -0.061 4.061 22 C -0.178 4.178 23 C -0.177 4.177 24 C -0.171 4.171 25 H 0.214 0.786 26 H 0.137 0.863 27 H 0.095 0.905 28 H 0.077 0.923 29 H 0.181 0.819 30 H 0.177 0.823 31 H 0.154 0.846 32 H 0.088 0.912 33 H 0.090 0.910 34 H 0.102 0.898 35 H 0.082 0.918 36 H 0.091 0.909 37 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 0.476 4.832 -12.761 13.654 hybrid contribution -0.312 -0.145 0.514 0.619 sum 0.163 4.687 -12.247 13.115 Atomic orbital electron populations 1.24246 0.95380 1.02691 1.06782 1.23183 0.94395 0.97746 0.94862 1.19080 0.83895 0.85435 1.02902 1.43452 1.55087 1.12200 1.04334 1.19783 1.28932 1.07876 0.86110 0.87825 1.25318 0.95801 0.97864 0.98820 1.70037 1.26425 1.34757 1.20124 0.85857 0.79045 0.79274 0.80508 1.19297 1.20720 1.20946 1.17155 0.83273 0.86251 0.82056 1.90527 1.53528 1.21726 1.82181 1.20780 1.09859 0.97048 0.92295 1.23115 1.04467 0.95678 0.97518 1.21625 1.08541 0.97114 0.89050 1.41364 1.49377 1.15674 1.08634 0.76029 1.20151 1.02073 0.89674 0.91449 1.21425 0.96152 0.93541 0.94993 1.23004 1.00224 0.97611 0.96917 1.22809 0.97949 0.98642 0.98301 1.22946 0.96405 1.01200 0.96565 0.78575 0.86279 0.90460 0.92318 0.81870 0.82308 0.84617 0.91193 0.91049 0.89829 0.91783 0.90856 0.90982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.27 -5.87 19.25 29.55 0.57 -5.30 16 2 C -0.10 -2.34 9.05 -37.12 -0.34 -2.67 16 3 C 0.21 4.93 4.68 -6.82 -0.03 4.90 16 4 N -0.43 -11.58 2.61 -119.23 -0.31 -11.89 16 5 C -0.30 -8.47 9.37 -14.98 -0.14 -8.61 16 6 H 0.10 3.05 7.34 -52.48 -0.39 2.67 16 7 C 0.02 0.65 5.09 -17.46 -0.09 0.56 16 8 N -0.87 -23.40 9.14 55.50 0.51 -22.89 16 9 Si 0.93 20.99 29.57 -169.99 -5.03 15.96 16 10 H -0.27 -6.10 7.11 56.52 0.40 -5.69 16 11 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 12 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 13 C 0.52 13.66 7.52 -12.63 -0.09 13.57 16 14 O -0.59 -16.81 14.42 5.22 0.08 -16.73 16 15 C -0.19 -4.11 6.10 -102.99 -0.63 -4.74 16 16 C -0.18 -3.42 8.18 -37.50 -0.31 -3.73 16 17 C -0.04 -0.53 11.87 -16.85 -0.20 -0.73 16 18 N -0.56 -7.80 5.72 -8.87 -0.05 -7.85 16 19 H 0.40 4.18 8.21 -40.82 -0.34 3.84 16 20 C 0.08 1.48 6.27 -81.48 -0.51 0.97 16 21 C -0.04 -0.69 3.90 -90.96 -0.35 -1.04 16 22 C -0.14 -1.71 7.62 -25.92 -0.20 -1.91 16 23 C -0.14 -1.56 8.08 -25.92 -0.21 -1.77 16 24 C -0.13 -1.81 7.63 -25.92 -0.20 -2.01 16 25 H 0.20 3.48 7.80 -54.10 -0.42 3.06 16 26 H 0.12 2.95 5.98 -51.93 -0.31 2.64 16 27 H 0.08 1.61 4.78 -51.93 -0.25 1.36 16 28 H 0.27 6.80 8.31 -40.82 -0.34 6.46 16 29 H 0.16 3.07 3.65 -52.49 -0.19 2.88 16 30 H 0.16 1.73 8.06 -52.48 -0.42 1.31 16 31 H 0.14 2.68 6.13 -51.93 -0.32 2.36 16 32 H 0.07 0.74 7.21 -51.93 -0.37 0.36 16 33 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 36 H 0.07 1.06 8.14 -51.92 -0.42 0.64 16 37 H 0.07 0.90 8.09 -51.93 -0.42 0.48 16 LS Contribution 305.53 15.07 4.60 4.60 Total: -1.00 -32.52 305.53 -7.18 -39.71 By element: Atomic # 1 Polarization: 15.86 SS G_CDS: -4.25 Total: 11.61 kcal Atomic # 6 Polarization: -9.78 SS G_CDS: -2.73 Total: -12.51 kcal Atomic # 7 Polarization: -42.78 SS G_CDS: 0.15 Total: -42.63 kcal Atomic # 8 Polarization: -16.81 SS G_CDS: 0.08 Total: -16.73 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.03 Total: 15.96 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -32.52 -7.18 -39.71 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491702540.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.520 kcal (2) G-P(sol) polarization free energy of solvation -32.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 126.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.705 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds