Wall clock time and date at job start Mon Mar 30 2020 01:11:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.47207 * 179.97438 * 2 1 4 4 N 1.46503 * 109.47088 * 14.95888 * 3 2 1 5 5 C 1.36970 * 119.99985 * 261.80647 * 4 3 2 6 6 H 1.08005 * 120.00195 * 197.60919 * 5 4 3 7 7 C 1.38971 * 120.00476 * 17.60015 * 5 4 3 8 8 N 1.31422 * 119.99690 * 12.82756 * 7 5 4 9 9 Si 1.86797 * 120.00548 * 192.82914 * 7 5 4 10 10 H 1.48499 * 109.46792 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47342 * 119.99764 * 9 7 5 12 12 H 1.48502 * 109.47139 * 240.00324 * 9 7 5 13 13 C 1.34773 * 119.99780 * 81.80196 * 4 3 2 14 14 O 1.21663 * 119.99949 * 181.64571 * 13 4 3 15 15 C 1.47184 * 120.00330 * 1.64785 * 13 4 3 16 16 C 1.46711 * 127.01654 * 351.05067 * 15 13 4 17 17 C 1.34444 * 106.39020 * 179.97438 * 16 15 13 18 18 N 1.36430 * 109.08712 * 359.97438 * 17 16 15 19 19 H 0.96994 * 124.82057 * 180.02562 * 18 17 16 20 20 C 1.34704 * 110.36028 * 359.97438 * 18 17 16 21 21 C 1.50694 * 125.90009 * 180.26273 * 20 18 17 22 22 C 1.53784 * 113.61657 * 37.19056 * 21 20 18 23 23 C 1.53779 * 87.08295 * 220.01920 * 22 21 20 24 24 C 1.53777 * 87.08044 * 25.43309 * 23 22 21 25 25 H 4.40649 * 5.51379 * 180.02562 * 4 1 2 26 26 H 1.09000 * 109.46735 * 254.96247 * 3 2 1 27 27 H 1.09000 * 109.46953 * 134.95661 * 3 2 1 28 28 H 0.96998 * 120.00193 * 179.97438 * 8 7 5 29 29 H 1.08001 * 126.80413 * 359.95887 * 16 15 13 30 30 H 1.08004 * 125.46037 * 180.02562 * 17 16 15 31 31 H 1.09003 * 112.85553 * 168.49906 * 21 20 18 32 32 H 1.08995 * 113.61192 * 334.57156 * 22 21 20 33 33 H 1.09003 * 113.61446 * 105.46864 * 22 21 20 34 34 H 1.09004 * 113.61546 * 270.88175 * 23 22 21 35 35 H 1.09002 * 113.61315 * 139.98089 * 23 22 21 36 36 H 1.09009 * 113.61227 * 220.01653 * 24 23 22 37 37 H 1.08997 * 113.69337 * 89.12774 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1349 -1.3336 -0.3565 5 6 3.5230 -2.2058 0.6256 6 1 4.1377 -3.0587 0.3784 7 6 3.1259 -1.9933 1.9404 8 7 2.1842 -1.1168 2.2088 9 14 3.9306 -2.9535 3.3260 10 1 4.9536 -3.8711 2.7633 11 1 4.5784 -2.0092 4.2714 12 1 2.8991 -3.7439 4.0446 13 6 3.2028 -1.7027 -1.6510 14 8 3.5804 -2.8211 -1.9456 15 6 2.8201 -0.7529 -2.7082 16 6 2.1776 0.5541 -2.5310 17 6 2.0179 1.0684 -3.7629 18 7 2.5089 0.1871 -4.6814 19 1 2.5092 0.3298 -5.6408 20 6 2.9941 -0.9088 -4.0666 21 6 3.6228 -2.0978 -4.7462 22 6 4.4841 -1.7266 -5.9649 23 6 3.8965 -2.9665 -6.6592 24 6 2.6817 -2.8146 -5.7287 25 1 -1.0499 -0.0003 -0.0003 26 1 3.0092 0.2675 0.9925 27 1 3.0090 0.7269 -0.7272 28 1 1.9068 -0.9687 3.1264 29 1 1.8898 1.0122 -1.5963 30 1 1.5730 2.0262 -3.9892 31 1 4.1196 -2.7710 -4.0476 32 1 4.1953 -0.7858 -6.4334 33 1 5.5560 -1.7967 -5.7797 34 1 4.4693 -3.8773 -6.4844 35 1 3.6628 -2.8078 -7.7120 36 1 2.2983 -3.7633 -5.3528 37 1 1.8991 -2.1717 -6.1316 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491702540.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:05 Heat of formation + Delta-G solvation = 99.795565 kcal Electronic energy + Delta-G solvation = -20943.824829 eV Core-core repulsion = 17882.875567 eV Total energy + Delta-G solvation = -3060.949262 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.23550 -39.97770 -39.03444 -37.02870 -34.25484 -32.97741 -31.66554 -30.48418 -28.26365 -27.02661 -26.52177 -25.59858 -23.15786 -21.85909 -20.40661 -19.77052 -19.50555 -18.75204 -18.18927 -17.18956 -16.39857 -16.13104 -15.91104 -15.84013 -15.29624 -15.03514 -14.89812 -14.45283 -14.02190 -13.54016 -13.39851 -13.34394 -13.11818 -12.97087 -12.92717 -12.62103 -12.13708 -12.10378 -11.60684 -11.35237 -11.26375 -11.15770 -11.03637 -10.61137 -10.24515 -9.75639 -9.52304 -8.90814 -8.24332 -5.88342 0.94091 1.41186 1.41413 1.55671 1.69232 2.10039 2.30721 2.42128 2.44857 2.71292 3.24111 3.42777 3.66718 3.77937 3.82444 3.96163 4.07599 4.30004 4.33366 4.51585 4.65994 4.72028 4.76712 4.80398 4.93056 5.05255 5.08920 5.11413 5.15000 5.19863 5.40026 5.47581 5.48660 5.59150 5.94569 6.06005 6.24548 6.56733 6.83873 7.16833 7.21476 7.51789 8.13393 8.72255 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.022229 B = 0.006119 C = 0.005097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.299146 B = 4574.652853 C = 5492.073780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.257 4.257 2 C -0.137 4.137 3 C 0.218 3.782 4 N -0.450 5.450 5 C -0.341 4.341 6 H 0.074 0.926 7 C -0.006 4.006 8 N -0.883 5.883 9 Si 0.992 3.008 10 H -0.276 1.276 11 H -0.263 1.263 12 H -0.278 1.278 13 C 0.507 3.493 14 O -0.636 6.636 15 C -0.247 4.247 16 C -0.213 4.213 17 C 0.000 4.000 18 N -0.530 5.530 19 H 0.429 0.571 20 C 0.097 3.903 21 C -0.066 4.066 22 C -0.125 4.125 23 C -0.124 4.124 24 C -0.131 4.131 25 H 0.233 0.767 26 H 0.099 0.901 27 H 0.101 0.899 28 H 0.271 0.729 29 H 0.157 0.843 30 H 0.212 0.788 31 H 0.088 0.912 32 H 0.098 0.902 33 H 0.069 0.931 34 H 0.079 0.921 35 H 0.097 0.903 36 H 0.052 0.948 37 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.747 7.275 -14.959 16.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.275 4.275 2 C -0.139 4.139 3 C 0.096 3.904 4 N -0.167 5.167 5 C -0.469 4.469 6 H 0.092 0.908 7 C -0.207 4.207 8 N -0.522 5.522 9 Si 0.815 3.185 10 H -0.200 1.200 11 H -0.188 1.188 12 H -0.204 1.204 13 C 0.300 3.700 14 O -0.526 6.526 15 C -0.257 4.257 16 C -0.236 4.236 17 C -0.128 4.128 18 N -0.127 5.127 19 H 0.269 0.731 20 C -0.022 4.022 21 C -0.086 4.086 22 C -0.163 4.163 23 C -0.161 4.161 24 C -0.168 4.168 25 H 0.250 0.750 26 H 0.117 0.883 27 H 0.118 0.882 28 H 0.081 0.919 29 H 0.174 0.826 30 H 0.228 0.772 31 H 0.106 0.894 32 H 0.117 0.883 33 H 0.087 0.913 34 H 0.098 0.902 35 H 0.115 0.885 36 H 0.071 0.929 37 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -0.640 6.874 -15.011 16.523 hybrid contribution -0.023 -0.746 1.138 1.361 sum -0.664 6.128 -13.873 15.181 Atomic orbital electron populations 1.25105 0.96306 1.00927 1.05145 1.23316 0.94825 0.99353 0.96381 1.19037 0.84605 0.84501 1.02295 1.43649 1.55562 1.13059 1.04402 1.19695 1.30771 1.08628 0.87830 0.90827 1.26051 0.95880 0.98643 1.00135 1.70147 1.26363 1.34916 1.20756 0.84907 0.77978 0.78097 0.77479 1.20038 1.18802 1.20422 1.17996 0.82228 0.86776 0.82958 1.90471 1.55321 1.23800 1.82991 1.20628 1.13896 0.98431 0.92727 1.23018 1.06386 0.94995 0.99251 1.22228 1.05372 0.97810 0.87356 1.41290 1.47477 1.13992 1.09935 0.73069 1.20252 1.00654 0.90703 0.90593 1.21435 0.98326 0.93078 0.95749 1.22999 0.99485 0.99451 0.94339 1.22747 0.95916 0.98002 0.99479 1.22978 0.97397 1.00221 0.96236 0.75041 0.88308 0.88186 0.91896 0.82601 0.77159 0.89373 0.88331 0.91254 0.90225 0.88493 0.92873 0.88984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -10.84 19.25 74.32 1.43 -9.41 16 2 C -0.14 -6.49 9.05 31.13 0.28 -6.21 16 3 C 0.22 10.69 4.68 84.58 0.40 11.08 16 4 N -0.45 -25.59 2.61 -649.36 -1.70 -27.29 16 5 C -0.34 -20.65 9.37 84.07 0.79 -19.87 16 6 H 0.07 4.75 7.34 -2.91 -0.02 4.73 16 7 C -0.01 -0.32 5.09 84.93 0.43 0.12 16 8 N -0.88 -48.34 9.14 21.67 0.20 -48.14 16 9 Si 0.99 44.35 29.57 68.60 2.03 46.38 16 10 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 11 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 12 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 13 C 0.51 28.46 7.52 86.59 0.65 29.11 16 14 O -0.64 -39.31 14.42 -4.23 -0.06 -39.37 16 15 C -0.25 -10.99 6.10 -18.81 -0.11 -11.10 16 16 C -0.21 -7.73 8.18 23.62 0.19 -7.54 16 17 C 0.00 0.01 11.87 83.11 0.99 0.99 16 18 N -0.53 -12.91 5.72 -181.97 -1.04 -13.95 16 19 H 0.43 6.51 8.21 -92.71 -0.76 5.74 16 20 C 0.10 3.40 6.27 42.02 0.26 3.67 16 21 C -0.07 -2.18 3.90 -11.01 -0.04 -2.22 16 22 C -0.13 -2.77 7.62 31.12 0.24 -2.53 16 23 C -0.12 -2.45 8.08 31.12 0.25 -2.20 16 24 C -0.13 -3.39 7.63 31.12 0.24 -3.15 16 25 H 0.23 7.64 7.80 -4.42 -0.03 7.60 16 26 H 0.10 5.14 5.98 -2.39 -0.01 5.13 16 27 H 0.10 4.33 4.78 -2.39 -0.01 4.32 16 28 H 0.27 13.91 8.31 -92.71 -0.77 13.14 16 29 H 0.16 5.82 3.65 -2.91 -0.01 5.81 16 30 H 0.21 3.20 8.06 -2.91 -0.02 3.18 16 31 H 0.09 3.78 6.13 -2.39 -0.01 3.77 16 32 H 0.10 1.61 7.21 -2.39 -0.02 1.60 16 33 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 35 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 36 H 0.05 1.57 8.14 -2.38 -0.02 1.55 16 37 H 0.09 2.00 8.09 -2.39 -0.02 1.98 16 Total: -1.00 -77.90 305.53 5.77 -72.14 By element: Atomic # 1 Polarization: 29.14 SS G_CDS: 0.34 Total: 29.48 kcal Atomic # 6 Polarization: -25.24 SS G_CDS: 5.99 Total: -19.25 kcal Atomic # 7 Polarization: -86.83 SS G_CDS: -2.54 Total: -89.37 kcal Atomic # 8 Polarization: -39.31 SS G_CDS: -0.06 Total: -39.37 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.38 kcal Total: -77.90 5.77 -72.14 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491702540.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.935 kcal (2) G-P(sol) polarization free energy of solvation -77.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.139 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds