Wall clock time and date at job start Mon Mar 30 2020 01:06:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17392 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 N 1.46902 * 109.46971 * 192.15792 * 3 2 1 5 5 C 1.46908 * 111.00039 * 69.51066 * 4 3 2 6 6 C 1.50699 * 109.47070 * 199.23146 * 5 4 3 7 7 O 1.21292 * 120.00137 * 5.31855 * 6 5 4 8 8 N 1.34775 * 119.99462 * 185.31442 * 6 5 4 9 9 C 1.37105 * 119.99557 * 180.02562 * 8 6 5 10 10 H 1.07998 * 120.00061 * 359.97438 * 9 8 6 11 11 C 1.38949 * 119.99693 * 180.02562 * 9 8 6 12 12 N 1.31406 * 120.00312 * 359.97438 * 11 9 8 13 13 Si 1.86803 * 119.99765 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.47238 * 60.00157 * 13 11 9 15 15 H 1.48498 * 109.46880 * 180.02562 * 13 11 9 16 16 H 1.48500 * 109.46997 * 299.99810 * 13 11 9 17 17 C 1.46899 * 111.00339 * 193.46954 * 4 3 2 18 18 C 1.50693 * 109.46935 * 66.04361 * 17 4 3 19 19 C 1.38233 * 120.00224 * 90.00423 * 18 17 4 20 20 C 1.38227 * 120.00587 * 179.97438 * 19 18 17 21 21 C 1.38234 * 119.99819 * 359.95976 * 20 19 18 22 22 C 1.38238 * 120.00026 * 0.27311 * 21 20 19 23 23 C 1.38233 * 120.00088 * 269.98010 * 18 17 4 24 24 H 4.40890 * 5.52242 * 180.02562 * 4 1 2 25 25 H 1.09000 * 109.47185 * 72.16067 * 3 2 1 26 26 H 1.09000 * 109.46907 * 312.15745 * 3 2 1 27 27 H 1.08995 * 109.47227 * 319.24106 * 5 4 3 28 28 H 1.09000 * 109.46447 * 79.23258 * 5 4 3 29 29 H 0.96995 * 120.00658 * 0.02562 * 8 6 5 30 30 H 0.97002 * 120.00215 * 179.97438 * 12 11 9 31 31 H 1.09001 * 109.46727 * 306.04634 * 17 4 3 32 32 H 1.09000 * 109.47386 * 186.04783 * 17 4 3 33 33 H 1.08009 * 119.99649 * 359.97438 * 19 18 17 34 34 H 1.08003 * 120.00634 * 179.97438 * 20 19 18 35 35 H 1.08001 * 120.00525 * 180.02562 * 21 20 19 36 36 H 1.07997 * 120.00194 * 179.72935 * 22 21 20 37 37 H 1.07998 * 120.00089 * 0.02562 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1350 1.3548 0.2917 5 6 2.8577 1.7258 1.6859 6 6 2.9251 3.2244 1.8298 7 8 3.0831 3.9213 0.8498 8 7 2.8096 3.7901 3.0476 9 6 2.8703 5.1536 3.1785 10 1 3.0111 5.7741 2.3059 11 6 2.7518 5.7368 4.4341 12 7 2.5810 4.9818 5.4959 13 14 2.8353 7.5945 4.6126 14 1 1.7425 8.2172 3.8231 15 1 2.6840 7.9615 6.0435 16 1 4.1463 8.0813 4.1132 17 6 4.5679 1.4735 -0.0096 18 6 4.7828 1.3266 -1.4939 19 6 4.7551 2.4420 -2.3100 20 6 4.9527 2.3074 -3.6715 21 6 5.1790 1.0575 -4.2168 22 6 5.2019 -0.0585 -3.4014 23 6 5.0082 0.0766 -2.0394 24 1 -1.0503 -0.0004 0.0001 25 1 3.0095 -0.3140 -0.9782 26 1 3.0096 -0.6889 0.7618 27 1 1.8625 1.3784 1.9632 28 1 3.5986 1.2644 2.3387 29 1 2.6835 3.2328 3.8314 30 1 2.4986 5.3890 6.3725 31 1 5.1156 0.6913 0.5159 32 1 4.9278 2.4498 0.3148 33 1 4.5789 3.4187 -1.8839 34 1 4.9307 3.1788 -4.3092 35 1 5.3339 0.9523 -5.2805 36 1 5.3743 -1.0356 -3.8280 37 1 5.0298 -0.7948 -1.4018 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491703029.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:06:50 Heat of formation + Delta-G solvation = 34.790839 kcal Electronic energy + Delta-G solvation = -19955.709034 eV Core-core repulsion = 16891.940955 eV Total energy + Delta-G solvation = -3063.768079 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.74467 -39.86859 -37.99738 -35.88003 -34.05133 -33.28610 -32.41966 -31.75342 -29.46831 -28.03001 -26.60622 -24.09860 -23.38056 -21.92439 -21.01622 -19.89546 -19.05885 -17.85620 -17.71381 -16.80983 -16.66412 -16.40573 -16.02263 -15.67337 -15.48274 -15.19108 -15.12426 -14.24670 -14.05333 -13.90866 -13.73779 -13.43450 -13.39156 -13.16249 -12.99700 -12.62116 -12.42783 -12.12925 -11.85429 -11.80651 -11.47257 -11.37600 -11.09714 -10.33680 -9.99420 -9.74960 -9.64410 -9.23556 -8.45402 -5.93990 0.45101 0.55782 1.39454 1.40800 1.51743 1.76050 1.94368 2.07741 2.29841 2.78199 3.07937 3.21150 3.44582 3.58072 3.88314 3.98602 4.21029 4.23683 4.25583 4.34419 4.38837 4.47154 4.53476 4.59389 4.66552 4.76551 4.84331 5.11849 5.16694 5.22340 5.41140 5.59001 5.66858 5.79340 5.82944 6.04150 6.10003 6.18667 6.62292 6.74322 7.14337 7.57937 8.14452 8.72010 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.020415 B = 0.004443 C = 0.003899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.220758 B = 6300.271537 C = 7180.339480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.212 4.212 3 C 0.157 3.843 4 N -0.528 5.528 5 C 0.059 3.941 6 C 0.443 3.557 7 O -0.611 6.611 8 N -0.576 5.576 9 C -0.332 4.332 10 H 0.077 0.923 11 C -0.012 4.012 12 N -0.922 5.922 13 Si 0.991 3.009 14 H -0.273 1.273 15 H -0.270 1.270 16 H -0.272 1.272 17 C 0.102 3.898 18 C -0.085 4.085 19 C -0.118 4.118 20 C -0.132 4.132 21 C -0.124 4.124 22 C -0.122 4.122 23 C -0.120 4.120 24 H 0.244 0.756 25 H 0.113 0.887 26 H 0.081 0.919 27 H 0.098 0.902 28 H 0.077 0.923 29 H 0.395 0.605 30 H 0.277 0.723 31 H 0.066 0.934 32 H 0.058 0.942 33 H 0.095 0.905 34 H 0.130 0.870 35 H 0.147 0.853 36 H 0.152 0.848 37 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.313 -14.092 -12.207 18.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.213 4.213 3 C 0.032 3.968 4 N -0.253 5.253 5 C -0.072 4.072 6 C 0.230 3.770 7 O -0.496 6.496 8 N -0.214 5.214 9 C -0.461 4.461 10 H 0.095 0.905 11 C -0.212 4.212 12 N -0.563 5.563 13 Si 0.815 3.185 14 H -0.198 1.198 15 H -0.194 1.194 16 H -0.197 1.197 17 C -0.025 4.025 18 C -0.086 4.086 19 C -0.137 4.137 20 C -0.150 4.150 21 C -0.142 4.142 22 C -0.140 4.140 23 C -0.138 4.138 24 H 0.260 0.740 25 H 0.131 0.869 26 H 0.098 0.902 27 H 0.117 0.883 28 H 0.095 0.905 29 H 0.229 0.771 30 H 0.087 0.913 31 H 0.084 0.916 32 H 0.077 0.923 33 H 0.113 0.887 34 H 0.148 0.852 35 H 0.164 0.836 36 H 0.170 0.830 37 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 3.174 -13.250 -12.940 18.791 hybrid contribution -0.005 0.613 1.344 1.478 sum 3.169 -12.637 -11.596 17.441 Atomic orbital electron populations 1.25671 0.96857 0.98666 1.00395 1.23375 0.95182 1.01595 1.01117 1.19259 0.85008 0.88949 1.03600 1.61325 1.16907 1.25567 1.21469 1.21737 1.03208 0.92248 0.90012 1.20729 0.82268 0.90986 0.83035 1.90486 1.55127 1.65162 1.38837 1.41928 1.64598 1.07207 1.07672 1.19603 1.48915 0.83239 0.94366 0.90453 1.26003 0.96338 1.04683 0.94144 1.69665 1.49659 1.37651 0.99296 0.85016 0.78889 0.77030 0.77560 1.19849 1.19398 1.19703 1.20992 0.86997 1.01585 0.92917 1.19758 1.00045 0.94146 0.94622 1.21142 0.99416 0.98425 0.94698 1.21362 1.00262 0.99001 0.94363 1.21477 0.99460 0.92106 1.01110 1.21474 0.99467 0.99845 0.93171 1.21309 1.00006 0.96185 0.96302 0.74002 0.86945 0.90164 0.88345 0.90517 0.77142 0.91333 0.91641 0.92296 0.88689 0.85202 0.83557 0.83013 0.83869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -5.17 19.25 74.32 1.43 -3.74 16 2 C -0.21 -6.16 12.43 31.13 0.39 -5.78 16 3 C 0.16 4.14 5.28 84.50 0.45 4.59 16 4 N -0.53 -17.95 3.98 -916.48 -3.65 -21.60 16 5 C 0.06 2.16 5.32 85.56 0.46 2.62 16 6 C 0.44 21.84 7.33 87.66 0.64 22.49 16 7 O -0.61 -34.80 15.03 -3.07 -0.05 -34.85 16 8 N -0.58 -30.38 5.29 -306.98 -1.62 -32.00 16 9 C -0.33 -19.22 9.68 84.04 0.81 -18.41 16 10 H 0.08 4.77 7.16 -2.91 -0.02 4.75 16 11 C -0.01 -0.66 5.50 84.93 0.47 -0.19 16 12 N -0.92 -50.49 13.05 21.66 0.28 -50.20 16 13 Si 0.99 43.68 29.55 68.60 2.03 45.70 16 14 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 15 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 16 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 17 C 0.10 3.22 4.76 85.56 0.41 3.63 16 18 C -0.09 -2.46 4.92 -19.87 -0.10 -2.56 16 19 C -0.12 -3.76 9.70 22.27 0.22 -3.55 16 20 C -0.13 -3.35 10.05 22.27 0.22 -3.13 16 21 C -0.12 -2.47 10.05 22.27 0.22 -2.25 16 22 C -0.12 -2.26 10.05 22.27 0.22 -2.03 16 23 C -0.12 -2.58 7.85 22.27 0.17 -2.40 16 24 H 0.24 4.40 7.80 -4.40 -0.03 4.37 16 25 H 0.11 2.66 5.27 -2.39 -0.01 2.65 16 26 H 0.08 1.69 8.08 -2.39 -0.02 1.67 16 27 H 0.10 3.44 7.01 -2.39 -0.02 3.42 16 28 H 0.08 2.41 8.01 -2.39 -0.02 2.39 16 29 H 0.39 19.80 7.90 -92.71 -0.73 19.07 16 30 H 0.28 14.24 8.31 -92.71 -0.77 13.47 16 31 H 0.07 1.66 8.06 -2.39 -0.02 1.64 16 32 H 0.06 2.32 6.78 -2.39 -0.02 2.31 16 33 H 0.09 3.60 8.06 -2.91 -0.02 3.58 16 34 H 0.13 2.86 8.06 -2.91 -0.02 2.83 16 35 H 0.15 2.02 8.06 -2.91 -0.02 2.00 16 36 H 0.15 1.79 8.06 -2.91 -0.02 1.76 16 37 H 0.14 2.29 7.79 -2.91 -0.02 2.27 16 Total: -1.00 -71.62 324.80 3.35 -68.27 By element: Atomic # 1 Polarization: 35.05 SS G_CDS: 0.34 Total: 35.39 kcal Atomic # 6 Polarization: -16.72 SS G_CDS: 6.01 Total: -10.71 kcal Atomic # 7 Polarization: -98.82 SS G_CDS: -4.99 Total: -103.81 kcal Atomic # 8 Polarization: -34.80 SS G_CDS: -0.05 Total: -34.85 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.70 kcal Total: -71.62 3.35 -68.27 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491703029.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.062 kcal (2) G-P(sol) polarization free energy of solvation -71.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.271 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds