Wall clock time and date at job start Mon Mar 30 2020 01:00:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17410 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 H 1.08998 * 109.47261 * 175.36815 * 3 2 1 5 5 C 1.53005 * 109.47113 * 55.36570 * 3 2 1 6 6 C 1.53002 * 109.47039 * 175.00037 * 5 3 2 7 7 N 1.46494 * 109.47151 * 295.36580 * 3 2 1 8 8 C 1.34776 * 120.00388 * 275.00116 * 7 3 2 9 9 O 1.21590 * 119.99595 * 359.97438 * 8 7 3 10 10 N 1.34775 * 120.00454 * 180.02562 * 8 7 3 11 11 C 1.39959 * 120.00054 * 184.52206 * 10 8 7 12 12 C 1.39285 * 119.94876 * 144.35937 * 11 10 8 13 13 C 1.38488 * 120.43146 * 179.97438 * 12 11 10 14 14 C 1.37678 * 120.31880 * 0.02562 * 13 12 11 15 15 C 1.40744 * 119.88594 * 359.97438 * 14 13 12 16 16 C 1.41412 * 120.21080 * 180.02562 * 15 14 13 17 17 H 1.07990 * 120.00130 * 155.36827 * 16 15 14 18 18 C 1.39936 * 119.99623 * 335.37246 * 16 15 14 19 19 N 1.30829 * 119.99967 * 344.59394 * 18 16 15 20 20 Si 1.86799 * 119.99645 * 164.60283 * 18 16 15 21 21 H 1.48504 * 109.47496 * 59.99889 * 20 18 16 22 22 H 1.48497 * 109.47073 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.47113 * 299.99318 * 20 18 16 24 24 C 1.38238 * 119.94665 * 324.08356 * 11 10 8 25 25 H 4.18741 * 15.04000 * 0.02562 * 4 2 1 26 26 H 1.09001 * 109.46923 * 295.00061 * 5 3 2 27 27 H 1.08996 * 109.46814 * 55.00134 * 5 3 2 28 28 H 1.09002 * 109.47138 * 59.99899 * 6 5 3 29 29 H 1.09001 * 109.46942 * 180.02562 * 6 5 3 30 30 H 1.09001 * 109.47283 * 299.99804 * 6 5 3 31 31 H 0.97008 * 120.00310 * 94.99937 * 7 3 2 32 32 H 0.97000 * 120.00020 * 4.52466 * 10 8 7 33 33 H 1.08006 * 119.78311 * 0.02562 * 12 11 10 34 34 H 1.07998 * 119.83982 * 180.02562 * 13 12 11 35 35 H 1.08004 * 120.05598 * 179.97438 * 14 13 12 36 36 H 0.97001 * 119.99678 * 180.02562 * 19 18 16 37 37 H 1.08001 * 120.15865 * 0.02562 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0089 1.0251 -0.0830 5 6 3.1564 -0.8190 -1.1869 6 6 4.6812 -0.7159 -1.2599 7 7 3.1346 -0.5908 1.2480 8 6 3.2630 0.1731 2.3509 9 8 2.9737 1.3534 2.3099 10 7 3.7130 -0.3709 3.4989 11 6 3.7569 0.3979 4.6676 12 6 3.4854 -0.1930 5.8993 13 6 3.5265 0.5582 7.0620 14 6 3.8360 1.8988 7.0127 15 6 4.1126 2.5097 5.7753 16 6 4.4318 3.8861 5.7168 17 1 5.0132 4.2709 4.8921 18 6 3.9943 4.7493 6.7276 19 7 3.0548 4.3663 7.5536 20 14 4.7517 6.4484 6.8972 21 1 4.5276 7.2174 5.6467 22 1 4.1189 7.1609 8.0360 23 1 6.2103 6.3178 7.1434 24 6 4.0752 1.7414 4.5983 25 1 -1.0500 -0.0009 0.0006 26 1 2.8685 -1.8624 -1.0585 27 1 2.7216 -0.4328 -2.1088 28 1 5.1160 -1.1020 -0.3379 29 1 5.0448 -1.2994 -2.1057 30 1 4.9691 0.3276 -1.3883 31 1 3.3658 -1.5324 1.2807 32 1 4.0065 -1.2953 3.5152 33 1 3.2420 -1.2442 5.9480 34 1 3.3147 0.0901 8.0120 35 1 3.8664 2.4807 7.9221 36 1 2.7513 4.9649 8.2540 37 1 4.2898 2.1996 3.6441 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491708277.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:00:30 Heat of formation + Delta-G solvation = 42.148196 kcal Electronic energy + Delta-G solvation = -19866.410881 eV Core-core repulsion = 16802.961842 eV Total energy + Delta-G solvation = -3063.449040 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.01249 -37.66454 -36.32384 -34.31804 -33.09224 -32.28297 -32.07224 -29.74318 -28.10840 -26.43860 -25.21466 -22.23022 -21.59388 -20.80665 -20.07679 -18.47901 -18.03118 -17.45418 -16.09676 -15.43039 -15.23043 -14.81152 -14.53420 -14.23741 -14.13312 -13.84435 -13.16712 -12.92038 -12.82652 -12.17653 -12.09262 -11.66881 -11.59899 -11.27205 -11.24144 -11.05473 -10.64150 -10.54447 -10.44120 -10.12592 -10.09034 -9.69698 -9.48486 -9.21087 -9.04069 -8.78609 -7.36846 -6.82073 -6.63478 -4.26495 2.49154 2.82080 2.87829 3.00142 3.12735 3.16473 3.28018 3.39330 3.72937 4.01876 4.30498 4.61421 4.72430 4.77489 4.85042 5.11565 5.46046 5.54613 5.70639 5.79106 5.86120 5.97739 6.06444 6.30346 6.46869 6.56124 6.84263 6.86350 7.11655 7.18841 7.32296 7.41305 7.65779 7.75660 7.90260 8.07411 8.17752 8.32710 8.49565 8.74129 8.96940 9.04685 9.11350 10.29734 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.020994 B = 0.004309 C = 0.004016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.412879 B = 6496.526127 C = 6970.991986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.195 4.195 3 C 0.273 3.727 4 H 0.110 0.890 5 C -0.123 4.123 6 C -0.153 4.153 7 N -0.742 5.742 8 C 0.698 3.302 9 O -0.559 6.559 10 N -0.680 5.680 11 C 0.165 3.835 12 C -0.263 4.263 13 C -0.093 4.093 14 C -0.174 4.174 15 C 0.117 3.883 16 C -0.456 4.456 17 H 0.076 0.924 18 C 0.075 3.925 19 N -0.796 5.796 20 Si 0.910 3.090 21 H -0.266 1.266 22 H -0.279 1.279 23 H -0.264 1.264 24 C -0.208 4.208 25 H 0.216 0.784 26 H 0.070 0.930 27 H 0.081 0.919 28 H 0.059 0.941 29 H 0.058 0.942 30 H 0.060 0.940 31 H 0.394 0.606 32 H 0.394 0.606 33 H 0.087 0.913 34 H 0.091 0.909 35 H 0.121 0.879 36 H 0.279 0.721 37 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.605 -10.401 -12.292 16.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.197 4.197 3 C 0.168 3.832 4 H 0.128 0.872 5 C -0.161 4.161 6 C -0.210 4.210 7 N -0.399 5.399 8 C 0.398 3.602 9 O -0.434 6.434 10 N -0.327 5.327 11 C 0.073 3.927 12 C -0.285 4.285 13 C -0.112 4.112 14 C -0.194 4.194 15 C 0.114 3.886 16 C -0.486 4.486 17 H 0.094 0.906 18 C -0.142 4.142 19 N -0.422 5.422 20 Si 0.734 3.266 21 H -0.190 1.190 22 H -0.204 1.204 23 H -0.189 1.189 24 C -0.230 4.230 25 H 0.233 0.767 26 H 0.089 0.911 27 H 0.100 0.900 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.228 0.772 32 H 0.227 0.773 33 H 0.105 0.895 34 H 0.109 0.891 35 H 0.139 0.861 36 H 0.090 0.910 37 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 0.202 -9.198 -12.154 15.243 hybrid contribution 0.034 -0.211 0.215 0.304 sum 0.237 -9.409 -11.938 15.203 Atomic orbital electron populations 1.24925 0.95919 1.00936 0.99330 1.23625 0.94886 1.00239 1.00918 1.17629 0.82880 0.99543 0.83188 0.87197 1.21763 0.96883 1.00356 0.97062 1.21781 0.94585 1.02568 1.02076 1.45175 1.72225 1.12694 1.09780 1.16010 0.78581 0.85395 0.80219 1.90998 1.55236 1.13892 1.83227 1.42539 1.67332 1.15014 1.07771 1.17238 1.01068 0.91371 0.83020 1.20019 1.18231 0.98311 0.91944 1.20444 1.00600 0.94669 0.95496 1.21398 1.06479 0.92907 0.98634 1.17518 0.87970 0.92869 0.90221 1.19533 1.30004 0.92445 1.06588 0.90553 1.25895 0.93213 1.00695 0.94424 1.69823 1.20673 1.37356 1.14355 0.86350 0.80283 0.81351 0.78601 1.19037 1.20399 1.18875 1.21093 1.10978 0.92665 0.98280 0.76750 0.91131 0.90018 0.92183 0.92318 0.92136 0.77212 0.77313 0.89472 0.89132 0.86099 0.90979 0.87005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.50 19.25 29.55 0.57 -1.94 16 2 C -0.20 -2.76 12.84 -37.12 -0.48 -3.24 16 3 C 0.27 3.46 2.41 -70.72 -0.17 3.29 16 4 H 0.11 1.60 7.58 -51.93 -0.39 1.21 16 5 C -0.12 -1.04 5.43 -26.73 -0.15 -1.18 16 6 C -0.15 -1.21 9.80 37.16 0.36 -0.84 16 7 N -0.74 -9.92 4.50 -61.45 -0.28 -10.19 16 8 C 0.70 13.18 8.35 -86.92 -0.73 12.45 16 9 O -0.56 -13.46 13.49 5.29 0.07 -13.39 16 10 N -0.68 -12.54 5.34 -14.27 -0.08 -12.61 16 11 C 0.17 3.86 6.28 -83.76 -0.53 3.34 16 12 C -0.26 -5.97 9.97 -39.10 -0.39 -6.36 16 13 C -0.09 -2.23 10.02 -39.69 -0.40 -2.63 16 14 C -0.17 -4.69 8.69 -38.84 -0.34 -5.03 16 15 C 0.12 3.31 5.58 -106.85 -0.60 2.71 16 16 C -0.46 -12.82 9.06 -37.74 -0.34 -13.16 16 17 H 0.08 2.09 7.89 -52.49 -0.41 1.67 16 18 C 0.07 1.96 5.19 -17.34 -0.09 1.87 16 19 N -0.80 -21.45 10.82 55.55 0.60 -20.84 16 20 Si 0.91 19.51 29.59 -169.99 -5.03 14.49 16 21 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 22 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 23 H -0.26 -5.56 7.11 56.52 0.40 -5.15 16 24 C -0.21 -5.58 8.43 -38.69 -0.33 -5.91 16 25 H 0.22 2.01 7.80 -54.09 -0.42 1.59 16 26 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.06 0.50 7.75 -51.93 -0.40 0.09 16 29 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.39 3.86 8.62 -40.82 -0.35 3.51 16 32 H 0.39 5.50 8.84 -40.82 -0.36 5.14 16 33 H 0.09 1.71 8.06 -52.48 -0.42 1.28 16 34 H 0.09 1.91 8.06 -52.49 -0.42 1.49 16 35 H 0.12 3.33 6.07 -52.48 -0.32 3.01 16 36 H 0.28 6.84 8.30 -40.82 -0.34 6.50 16 37 H 0.11 3.11 6.27 -52.49 -0.33 2.78 16 LS Contribution 324.15 15.07 4.88 4.88 Total: -1.00 -33.39 324.15 -8.08 -41.47 By element: Atomic # 1 Polarization: 17.47 SS G_CDS: -4.66 Total: 12.81 kcal Atomic # 6 Polarization: -13.02 SS G_CDS: -3.59 Total: -16.61 kcal Atomic # 7 Polarization: -43.90 SS G_CDS: 0.25 Total: -43.65 kcal Atomic # 8 Polarization: -13.46 SS G_CDS: 0.07 Total: -13.39 kcal Atomic # 14 Polarization: 19.51 SS G_CDS: -5.03 Total: 14.49 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -33.39 -8.08 -41.47 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491708277.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.614 kcal (2) G-P(sol) polarization free energy of solvation -33.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.466 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds