Wall clock time and date at job start Mon Mar 30 2020 01:00:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17410 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 H 1.08998 * 109.47261 * 175.36815 * 3 2 1 5 5 C 1.53005 * 109.47113 * 55.36570 * 3 2 1 6 6 C 1.53002 * 109.47039 * 175.00037 * 5 3 2 7 7 N 1.46494 * 109.47151 * 295.36580 * 3 2 1 8 8 C 1.34776 * 120.00388 * 275.00116 * 7 3 2 9 9 O 1.21590 * 119.99595 * 359.97438 * 8 7 3 10 10 N 1.34775 * 120.00454 * 180.02562 * 8 7 3 11 11 C 1.39959 * 120.00054 * 184.52206 * 10 8 7 12 12 C 1.39285 * 119.94876 * 144.35937 * 11 10 8 13 13 C 1.38488 * 120.43146 * 179.97438 * 12 11 10 14 14 C 1.37678 * 120.31880 * 0.02562 * 13 12 11 15 15 C 1.40744 * 119.88594 * 359.97438 * 14 13 12 16 16 C 1.41412 * 120.21080 * 180.02562 * 15 14 13 17 17 H 1.07990 * 120.00130 * 155.36827 * 16 15 14 18 18 C 1.39936 * 119.99623 * 335.37246 * 16 15 14 19 19 N 1.30829 * 119.99967 * 344.59394 * 18 16 15 20 20 Si 1.86799 * 119.99645 * 164.60283 * 18 16 15 21 21 H 1.48504 * 109.47496 * 59.99889 * 20 18 16 22 22 H 1.48497 * 109.47073 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.47113 * 299.99318 * 20 18 16 24 24 C 1.38238 * 119.94665 * 324.08356 * 11 10 8 25 25 H 4.18741 * 15.04000 * 0.02562 * 4 2 1 26 26 H 1.09001 * 109.46923 * 295.00061 * 5 3 2 27 27 H 1.08996 * 109.46814 * 55.00134 * 5 3 2 28 28 H 1.09002 * 109.47138 * 59.99899 * 6 5 3 29 29 H 1.09001 * 109.46942 * 180.02562 * 6 5 3 30 30 H 1.09001 * 109.47283 * 299.99804 * 6 5 3 31 31 H 0.97008 * 120.00310 * 94.99937 * 7 3 2 32 32 H 0.97000 * 120.00020 * 4.52466 * 10 8 7 33 33 H 1.08006 * 119.78311 * 0.02562 * 12 11 10 34 34 H 1.07998 * 119.83982 * 180.02562 * 13 12 11 35 35 H 1.08004 * 120.05598 * 179.97438 * 14 13 12 36 36 H 0.97001 * 119.99678 * 180.02562 * 19 18 16 37 37 H 1.08001 * 120.15865 * 0.02562 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0089 1.0251 -0.0830 5 6 3.1564 -0.8190 -1.1869 6 6 4.6812 -0.7159 -1.2599 7 7 3.1346 -0.5908 1.2480 8 6 3.2630 0.1731 2.3509 9 8 2.9737 1.3534 2.3099 10 7 3.7130 -0.3709 3.4989 11 6 3.7569 0.3979 4.6676 12 6 3.4854 -0.1930 5.8993 13 6 3.5265 0.5582 7.0620 14 6 3.8360 1.8988 7.0127 15 6 4.1126 2.5097 5.7753 16 6 4.4318 3.8861 5.7168 17 1 5.0132 4.2709 4.8921 18 6 3.9943 4.7493 6.7276 19 7 3.0548 4.3663 7.5536 20 14 4.7517 6.4484 6.8972 21 1 4.5276 7.2174 5.6467 22 1 4.1189 7.1609 8.0360 23 1 6.2103 6.3178 7.1434 24 6 4.0752 1.7414 4.5983 25 1 -1.0500 -0.0009 0.0006 26 1 2.8685 -1.8624 -1.0585 27 1 2.7216 -0.4328 -2.1088 28 1 5.1160 -1.1020 -0.3379 29 1 5.0448 -1.2994 -2.1057 30 1 4.9691 0.3276 -1.3883 31 1 3.3658 -1.5324 1.2807 32 1 4.0065 -1.2953 3.5152 33 1 3.2420 -1.2442 5.9480 34 1 3.3147 0.0901 8.0120 35 1 3.8664 2.4807 7.9221 36 1 2.7513 4.9649 8.2540 37 1 4.2898 2.1996 3.6441 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491708277.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:00:30 Heat of formation + Delta-G solvation = 20.622639 kcal Electronic energy + Delta-G solvation = -19867.344299 eV Core-core repulsion = 16802.961842 eV Total energy + Delta-G solvation = -3064.382458 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.53349 -39.34011 -37.66352 -36.13126 -34.89678 -33.47620 -33.03594 -31.72949 -29.81049 -27.55458 -27.18929 -23.62625 -22.75594 -22.63565 -21.76195 -19.67972 -19.60420 -19.06868 -17.55741 -17.20488 -16.54379 -16.41627 -16.28722 -15.59761 -15.50638 -14.90658 -14.82724 -14.57296 -14.03239 -13.95774 -13.56353 -13.14253 -12.90626 -12.80613 -12.56981 -12.38928 -12.21140 -12.03187 -11.90326 -11.63798 -11.56641 -11.27335 -11.10955 -11.00824 -10.65418 -10.40316 -9.36997 -8.69511 -8.59192 -6.35444 0.94686 1.04829 1.32515 1.36368 1.48411 1.52628 1.84265 2.13165 2.16370 2.22691 2.75610 3.31665 3.41021 3.76753 3.94626 4.10811 4.38280 4.49501 4.60537 4.66244 4.84007 5.04192 5.05326 5.07887 5.10358 5.13675 5.17377 5.22065 5.35092 5.41345 5.44449 5.73267 5.84773 6.07495 6.14365 6.18787 6.38632 6.63208 6.71000 6.96269 7.03121 7.09671 7.59110 8.35620 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.020994 B = 0.004309 C = 0.004016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.412879 B = 6496.526127 C = 6970.991986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.235 4.235 3 C 0.268 3.732 4 H 0.082 0.918 5 C -0.109 4.109 6 C -0.152 4.152 7 N -0.715 5.715 8 C 0.695 3.305 9 O -0.616 6.616 10 N -0.667 5.667 11 C 0.172 3.828 12 C -0.251 4.251 13 C -0.092 4.092 14 C -0.200 4.200 15 C 0.086 3.914 16 C -0.501 4.501 17 H 0.064 0.936 18 C 0.034 3.966 19 N -0.826 5.826 20 Si 0.985 3.015 21 H -0.266 1.266 22 H -0.262 1.262 23 H -0.257 1.257 24 C -0.236 4.236 25 H 0.245 0.755 26 H 0.090 0.910 27 H 0.093 0.907 28 H 0.056 0.944 29 H 0.080 0.920 30 H 0.046 0.954 31 H 0.416 0.584 32 H 0.419 0.581 33 H 0.131 0.869 34 H 0.123 0.877 35 H 0.107 0.893 36 H 0.288 0.712 37 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.286 -12.516 -12.768 17.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.236 4.236 3 C 0.163 3.837 4 H 0.100 0.900 5 C -0.147 4.147 6 C -0.210 4.210 7 N -0.373 5.373 8 C 0.395 3.605 9 O -0.494 6.494 10 N -0.316 5.316 11 C 0.078 3.922 12 C -0.272 4.272 13 C -0.110 4.110 14 C -0.220 4.220 15 C 0.083 3.917 16 C -0.531 4.531 17 H 0.083 0.917 18 C -0.180 4.180 19 N -0.452 5.452 20 Si 0.805 3.195 21 H -0.191 1.191 22 H -0.185 1.185 23 H -0.181 1.181 24 C -0.258 4.258 25 H 0.262 0.738 26 H 0.109 0.891 27 H 0.111 0.889 28 H 0.075 0.925 29 H 0.099 0.901 30 H 0.065 0.935 31 H 0.253 0.747 32 H 0.257 0.743 33 H 0.149 0.851 34 H 0.141 0.859 35 H 0.125 0.875 36 H 0.099 0.901 37 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -0.108 -11.418 -12.670 17.056 hybrid contribution 0.051 0.285 0.270 0.396 sum -0.057 -11.133 -12.400 16.665 Atomic orbital electron populations 1.25784 0.96926 0.99617 0.98011 1.24082 0.95794 1.01526 1.02220 1.17827 0.82735 0.99132 0.83984 0.89978 1.21726 0.97019 1.00643 0.95303 1.21793 0.94177 1.02144 1.02852 1.44922 1.70655 1.13270 1.08408 1.16240 0.78130 0.84969 0.81151 1.90976 1.57518 1.16719 1.84225 1.42268 1.67163 1.15736 1.06418 1.17301 0.99079 0.90634 0.85159 1.20446 1.15784 1.00208 0.90766 1.20830 0.98982 0.93609 0.97624 1.21370 1.08613 0.94407 0.97568 1.17865 0.88908 0.93534 0.91344 1.19750 1.31962 0.93523 1.07878 0.91738 1.26748 0.93097 1.04726 0.93406 1.69867 1.21362 1.39151 1.14865 0.85234 0.79579 0.75845 0.78872 1.19052 1.18549 1.18086 1.21044 1.13234 0.94606 0.96922 0.73838 0.89099 0.88866 0.92511 0.90138 0.93469 0.74661 0.74335 0.85067 0.85866 0.87501 0.90103 0.89376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.53 19.25 74.32 1.43 -3.10 16 2 C -0.23 -6.44 12.84 31.12 0.40 -6.04 16 3 C 0.27 6.66 2.41 43.19 0.10 6.77 16 4 H 0.08 2.51 7.58 -2.39 -0.02 2.49 16 5 C -0.11 -1.62 5.43 30.60 0.17 -1.46 16 6 C -0.15 -2.14 9.80 71.98 0.71 -1.44 16 7 N -0.72 -18.27 4.50 -466.58 -2.10 -20.37 16 8 C 0.69 26.19 8.35 179.06 1.49 27.68 16 9 O -0.62 -30.87 13.49 -4.00 -0.05 -30.93 16 10 N -0.67 -23.70 5.34 -317.32 -1.69 -25.40 16 11 C 0.17 7.98 6.28 38.10 0.24 8.22 16 12 C -0.25 -10.75 9.97 22.58 0.23 -10.52 16 13 C -0.09 -4.28 10.02 22.20 0.22 -4.05 16 14 C -0.20 -11.00 8.69 22.75 0.20 -10.80 16 15 C 0.09 5.11 5.58 -21.31 -0.12 4.99 16 16 C -0.50 -29.84 9.06 23.46 0.21 -29.63 16 17 H 0.06 3.80 7.89 -2.92 -0.02 3.78 16 18 C 0.03 1.87 5.19 85.25 0.44 2.31 16 19 N -0.83 -45.77 10.82 21.82 0.24 -45.54 16 20 Si 0.98 41.02 29.59 68.60 2.03 43.05 16 21 H -0.27 -10.98 7.11 99.48 0.71 -10.28 16 22 H -0.26 -10.05 7.11 99.48 0.71 -9.35 16 23 H -0.26 -10.30 7.11 99.48 0.71 -9.59 16 24 C -0.24 -13.19 8.43 22.85 0.19 -13.00 16 25 H 0.25 3.98 7.80 -4.42 -0.03 3.95 16 26 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 27 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 28 H 0.06 0.83 7.75 -2.39 -0.02 0.81 16 29 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.42 7.02 8.62 -92.70 -0.80 6.22 16 32 H 0.42 10.44 8.84 -92.71 -0.82 9.62 16 33 H 0.13 4.48 8.06 -2.91 -0.02 4.46 16 34 H 0.12 4.87 8.06 -2.91 -0.02 4.84 16 35 H 0.11 6.09 6.07 -2.91 -0.02 6.08 16 36 H 0.29 14.35 8.30 -92.71 -0.77 13.58 16 37 H 0.09 5.25 6.27 -2.91 -0.02 5.23 16 Total: -1.00 -77.44 324.15 3.81 -73.63 By element: Atomic # 1 Polarization: 36.15 SS G_CDS: -0.52 Total: 35.63 kcal Atomic # 6 Polarization: -35.99 SS G_CDS: 5.91 Total: -30.08 kcal Atomic # 7 Polarization: -87.74 SS G_CDS: -3.56 Total: -91.30 kcal Atomic # 8 Polarization: -30.87 SS G_CDS: -0.05 Total: -30.93 kcal Atomic # 14 Polarization: 41.02 SS G_CDS: 2.03 Total: 43.05 kcal Total: -77.44 3.81 -73.63 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491708277.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.250 kcal (2) G-P(sol) polarization free energy of solvation -77.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.628 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds