Wall clock time and date at job start Mon Mar 30 2020 01:56:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47210 * 179.97438 * 2 1 4 4 N 1.46496 * 109.46720 * 197.60905 * 3 2 1 5 5 C 1.36944 * 120.00025 * 264.64339 * 4 3 2 6 6 H 1.08001 * 119.99962 * 196.37945 * 5 4 3 7 7 C 1.38811 * 119.99907 * 16.38421 * 5 4 3 8 8 N 1.31618 * 119.99718 * 22.66188 * 7 5 4 9 9 Si 1.86794 * 119.99818 * 202.66440 * 7 5 4 10 10 H 1.48496 * 109.47185 * 89.99939 * 9 7 5 11 11 H 1.48501 * 109.47046 * 209.99992 * 9 7 5 12 12 H 1.48503 * 109.47185 * 329.99617 * 9 7 5 13 13 C 1.46498 * 120.00007 * 84.64756 * 4 3 2 14 14 C 1.50703 * 109.47476 * 269.99753 * 13 4 3 15 15 C 1.38387 * 119.92430 * 270.28085 * 14 13 4 16 16 C 1.38335 * 120.28951 * 180.27527 * 15 14 13 17 17 C 1.37985 * 120.14251 * 359.44242 * 16 15 14 18 18 C 1.39556 * 119.85541 * 0.27439 * 17 16 15 19 19 C 1.47842 * 120.14480 * 179.97438 * 18 17 16 20 20 O 1.21552 * 119.99918 * 179.97438 * 19 18 17 21 21 N 1.34769 * 120.00063 * 359.97438 * 19 18 17 22 22 C 1.46499 * 120.00039 * 179.97438 * 21 19 18 23 23 C 1.37931 * 119.92682 * 89.99795 * 14 13 4 24 24 H 4.40641 * 5.51364 * 180.02562 * 4 1 2 25 25 H 1.08999 * 109.46686 * 77.61293 * 3 2 1 26 26 H 1.08994 * 109.47146 * 317.60856 * 3 2 1 27 27 H 0.97002 * 119.99305 * 180.02562 * 8 7 5 28 28 H 1.09003 * 109.47367 * 149.99944 * 13 4 3 29 29 H 1.09006 * 109.47327 * 29.99748 * 13 4 3 30 30 H 1.07995 * 119.85637 * 0.02562 * 15 14 13 31 31 H 1.07998 * 119.92856 * 179.71375 * 16 15 14 32 32 H 1.08006 * 120.07249 * 180.25650 * 17 16 15 33 33 H 0.97001 * 120.00308 * 0.02562 * 21 19 18 34 34 H 1.09002 * 109.47460 * 300.00160 * 22 21 19 35 35 H 1.08994 * 109.47575 * 60.00252 * 22 21 19 36 36 H 1.09006 * 109.47438 * 180.02562 * 22 21 19 37 37 H 1.08002 * 120.07538 * 0.02562 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1337 1.3174 0.4178 5 6 3.4659 2.2549 -0.5235 6 1 4.0637 3.1105 -0.2460 7 6 3.0340 2.1056 -1.8342 8 7 1.9805 1.3626 -2.0994 9 14 3.9482 2.9591 -3.2217 10 1 5.0172 2.0647 -3.7340 11 1 2.9990 3.2752 -4.3191 12 1 4.5552 4.2161 -2.7149 13 6 3.2661 1.6311 1.8427 14 6 1.9775 2.2277 2.3476 15 6 1.7834 3.5968 2.2951 16 6 0.6058 4.1530 2.7617 17 6 -0.3881 3.3435 3.2725 18 6 -0.2010 1.9614 3.3229 19 6 -1.2615 1.0882 3.8694 20 8 -1.0959 -0.1153 3.9116 21 7 -2.4116 1.6264 4.3206 22 6 -3.4627 0.7610 4.8616 23 6 0.9920 1.4072 2.8557 24 1 -1.0502 -0.0005 0.0000 25 1 3.0094 -0.2196 -1.0038 26 1 3.0097 -0.7581 0.6928 27 1 1.6790 1.2580 -3.0154 28 1 4.0770 2.3458 1.9836 29 1 3.4857 0.7185 2.3969 30 1 2.5562 4.2343 1.8918 31 1 0.4624 5.2226 2.7222 32 1 -1.3087 3.7785 3.6327 33 1 -2.5439 2.5868 4.2866 34 1 -3.7847 0.0571 4.0941 35 1 -3.0751 0.2112 5.7192 36 1 -4.3107 1.3708 5.1736 37 1 1.1431 0.3385 2.8923 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491754043.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:23 Heat of formation + Delta-G solvation = 76.193869 kcal Electronic energy + Delta-G solvation = -20615.543526 eV Core-core repulsion = 17553.570818 eV Total energy + Delta-G solvation = -3061.972708 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.83583 -38.12253 -35.91201 -34.54399 -32.18726 -31.51886 -30.66041 -30.03923 -26.98322 -26.11359 -25.57604 -22.99984 -22.07412 -20.98039 -19.83758 -17.56672 -17.38960 -16.35637 -15.95618 -15.55808 -15.07422 -14.99905 -14.35287 -14.29150 -13.75709 -13.39173 -13.19573 -13.11826 -12.95776 -12.43240 -12.21816 -11.91433 -11.49621 -11.33734 -11.18536 -10.89106 -10.79677 -10.51431 -10.26412 -10.00143 -9.68819 -9.11435 -8.92371 -8.79451 -8.41952 -8.37102 -8.10963 -7.06446 -5.81883 -3.21168 1.34871 1.90709 3.22555 3.32007 3.35509 3.42716 3.43905 4.21587 4.42430 4.48624 4.58471 4.91091 5.13054 5.23529 5.31549 5.35653 5.44569 5.65558 5.70921 5.74685 5.87546 5.94195 5.97686 6.11245 6.37038 6.44893 6.50016 6.55737 6.73405 6.76438 6.89418 7.24421 7.24584 7.44181 7.51236 7.58158 7.71280 8.23569 8.39268 9.06614 9.31562 9.72354 10.18430 11.20562 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.024346 B = 0.005534 C = 0.005146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.822971 B = 5058.557510 C = 5439.774423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.289 4.289 2 C -0.098 4.098 3 C 0.267 3.733 4 N -0.575 5.575 5 C -0.264 4.264 6 H 0.077 0.923 7 C 0.005 3.995 8 N -0.881 5.881 9 Si 0.901 3.099 10 H -0.286 1.286 11 H -0.293 1.293 12 H -0.280 1.280 13 C 0.176 3.824 14 C -0.090 4.090 15 C -0.074 4.074 16 C -0.134 4.134 17 C -0.106 4.106 18 C -0.146 4.146 19 C 0.562 3.438 20 O -0.537 6.537 21 N -0.739 5.739 22 C 0.090 3.910 23 C -0.038 4.038 24 H 0.184 0.816 25 H 0.096 0.904 26 H 0.038 0.962 27 H 0.255 0.745 28 H 0.061 0.939 29 H 0.053 0.947 30 H 0.121 0.879 31 H 0.118 0.882 32 H 0.112 0.888 33 H 0.400 0.600 34 H 0.058 0.942 35 H 0.058 0.942 36 H 0.072 0.928 37 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.492 3.207 11.838 13.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.308 4.308 2 C -0.101 4.101 3 C 0.142 3.858 4 N -0.293 5.293 5 C -0.393 4.393 6 H 0.095 0.905 7 C -0.195 4.195 8 N -0.523 5.523 9 Si 0.731 3.269 10 H -0.213 1.213 11 H -0.220 1.220 12 H -0.205 1.205 13 C 0.049 3.951 14 C -0.093 4.093 15 C -0.093 4.093 16 C -0.152 4.152 17 C -0.126 4.126 18 C -0.149 4.149 19 C 0.351 3.649 20 O -0.414 6.414 21 N -0.392 5.392 22 C -0.054 4.054 23 C -0.057 4.057 24 H 0.201 0.799 25 H 0.114 0.886 26 H 0.056 0.944 27 H 0.065 0.935 28 H 0.080 0.920 29 H 0.071 0.929 30 H 0.139 0.861 31 H 0.136 0.864 32 H 0.130 0.870 33 H 0.234 0.766 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.091 0.909 37 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -5.391 2.270 11.672 13.055 hybrid contribution -0.502 1.197 -1.089 1.694 sum -5.893 3.467 10.582 12.599 Atomic orbital electron populations 1.24016 0.95143 1.04837 1.06803 1.24062 0.95072 0.96081 0.94887 1.17871 0.83049 0.85239 0.99667 1.44447 1.73856 1.11444 0.99505 1.19241 1.26342 1.05408 0.88298 0.90520 1.24944 0.96314 0.99796 0.98446 1.70171 1.21127 1.42175 1.18831 0.86314 0.79287 0.79106 0.82206 1.21339 1.21971 1.20505 1.20086 0.91537 0.97738 0.85734 1.21123 0.99948 0.93429 0.94846 1.21186 0.97052 0.95052 0.95996 1.20944 0.94280 0.99264 1.00688 1.20969 0.98572 0.92469 1.00566 1.19688 0.95741 0.93287 1.06216 1.18480 0.81802 0.87829 0.76794 1.90750 1.80040 1.15028 1.55600 1.45721 1.17250 1.10916 1.65281 1.21487 0.89743 0.95126 0.99066 1.21022 0.91134 0.99945 0.93633 0.79910 0.88579 0.94427 0.93458 0.92023 0.92876 0.86081 0.86422 0.86975 0.76557 0.92282 0.92362 0.90931 0.85735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.29 -7.04 19.02 29.55 0.56 -6.48 16 2 C -0.10 -2.45 10.28 -37.12 -0.38 -2.83 16 3 C 0.27 6.35 5.45 -6.83 -0.04 6.31 16 4 N -0.57 -13.60 2.49 -177.95 -0.44 -14.05 16 5 C -0.26 -6.79 9.66 -15.06 -0.15 -6.94 16 6 H 0.08 1.92 7.91 -52.49 -0.41 1.50 16 7 C 0.01 0.13 4.84 -17.43 -0.08 0.05 16 8 N -0.88 -24.80 9.49 55.49 0.53 -24.28 16 9 Si 0.90 21.07 29.61 -169.99 -5.03 16.03 16 10 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 12 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 13 C 0.18 3.47 5.82 -5.19 -0.03 3.44 16 14 C -0.09 -1.74 5.22 -104.68 -0.55 -2.29 16 15 C -0.07 -1.32 9.69 -39.49 -0.38 -1.70 16 16 C -0.13 -2.08 10.03 -39.64 -0.40 -2.47 16 17 C -0.11 -1.59 9.54 -39.18 -0.37 -1.96 16 18 C -0.15 -2.56 5.87 -104.97 -0.62 -3.18 16 19 C 0.56 9.60 7.77 -12.33 -0.10 9.50 16 20 O -0.54 -11.04 16.35 5.32 0.09 -10.95 16 21 N -0.74 -9.18 5.66 -68.05 -0.39 -9.56 16 22 C 0.09 0.91 10.70 59.85 0.64 1.55 16 23 C -0.04 -0.73 7.94 -39.19 -0.31 -1.04 16 24 H 0.18 4.02 7.80 -54.08 -0.42 3.60 16 25 H 0.10 2.48 6.43 -51.93 -0.33 2.14 16 26 H 0.04 0.79 7.97 -51.93 -0.41 0.38 16 27 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 28 H 0.06 1.13 7.97 -51.93 -0.41 0.71 16 29 H 0.05 0.95 7.89 -51.93 -0.41 0.54 16 30 H 0.12 2.08 8.06 -52.49 -0.42 1.66 16 31 H 0.12 1.49 8.06 -52.49 -0.42 1.07 16 32 H 0.11 1.24 6.41 -52.48 -0.34 0.90 16 33 H 0.40 3.82 6.86 -40.82 -0.28 3.54 16 34 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.12 2.59 7.65 -52.49 -0.40 2.19 16 LS Contribution 322.52 15.07 4.86 4.86 Total: -1.00 -32.19 322.52 -7.26 -39.46 By element: Atomic # 1 Polarization: 11.21 SS G_CDS: -4.67 Total: 6.53 kcal Atomic # 6 Polarization: -5.85 SS G_CDS: -2.20 Total: -8.05 kcal Atomic # 7 Polarization: -47.58 SS G_CDS: -0.30 Total: -47.89 kcal Atomic # 8 Polarization: -11.04 SS G_CDS: 0.09 Total: -10.95 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.03 Total: 16.03 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -32.19 -7.26 -39.46 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491754043.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.650 kcal (2) G-P(sol) polarization free energy of solvation -32.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.456 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds