Wall clock time and date at job start Mon Mar 30 2020 01:56:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47210 * 179.97438 * 2 1 4 4 N 1.46496 * 109.46720 * 197.60905 * 3 2 1 5 5 C 1.36944 * 120.00025 * 264.64339 * 4 3 2 6 6 H 1.08001 * 119.99962 * 196.37945 * 5 4 3 7 7 C 1.38811 * 119.99907 * 16.38421 * 5 4 3 8 8 N 1.31618 * 119.99718 * 22.66188 * 7 5 4 9 9 Si 1.86794 * 119.99818 * 202.66440 * 7 5 4 10 10 H 1.48496 * 109.47185 * 89.99939 * 9 7 5 11 11 H 1.48501 * 109.47046 * 209.99992 * 9 7 5 12 12 H 1.48503 * 109.47185 * 329.99617 * 9 7 5 13 13 C 1.46498 * 120.00007 * 84.64756 * 4 3 2 14 14 C 1.50703 * 109.47476 * 269.99753 * 13 4 3 15 15 C 1.38387 * 119.92430 * 270.28085 * 14 13 4 16 16 C 1.38335 * 120.28951 * 180.27527 * 15 14 13 17 17 C 1.37985 * 120.14251 * 359.44242 * 16 15 14 18 18 C 1.39556 * 119.85541 * 0.27439 * 17 16 15 19 19 C 1.47842 * 120.14480 * 179.97438 * 18 17 16 20 20 O 1.21552 * 119.99918 * 179.97438 * 19 18 17 21 21 N 1.34769 * 120.00063 * 359.97438 * 19 18 17 22 22 C 1.46499 * 120.00039 * 179.97438 * 21 19 18 23 23 C 1.37931 * 119.92682 * 89.99795 * 14 13 4 24 24 H 4.40641 * 5.51364 * 180.02562 * 4 1 2 25 25 H 1.08999 * 109.46686 * 77.61293 * 3 2 1 26 26 H 1.08994 * 109.47146 * 317.60856 * 3 2 1 27 27 H 0.97002 * 119.99305 * 180.02562 * 8 7 5 28 28 H 1.09003 * 109.47367 * 149.99944 * 13 4 3 29 29 H 1.09006 * 109.47327 * 29.99748 * 13 4 3 30 30 H 1.07995 * 119.85637 * 0.02562 * 15 14 13 31 31 H 1.07998 * 119.92856 * 179.71375 * 16 15 14 32 32 H 1.08006 * 120.07249 * 180.25650 * 17 16 15 33 33 H 0.97001 * 120.00308 * 0.02562 * 21 19 18 34 34 H 1.09002 * 109.47460 * 300.00160 * 22 21 19 35 35 H 1.08994 * 109.47575 * 60.00252 * 22 21 19 36 36 H 1.09006 * 109.47438 * 180.02562 * 22 21 19 37 37 H 1.08002 * 120.07538 * 0.02562 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1337 1.3174 0.4178 5 6 3.4659 2.2549 -0.5235 6 1 4.0637 3.1105 -0.2460 7 6 3.0340 2.1056 -1.8342 8 7 1.9805 1.3626 -2.0994 9 14 3.9482 2.9591 -3.2217 10 1 5.0172 2.0647 -3.7340 11 1 2.9990 3.2752 -4.3191 12 1 4.5552 4.2161 -2.7149 13 6 3.2661 1.6311 1.8427 14 6 1.9775 2.2277 2.3476 15 6 1.7834 3.5968 2.2951 16 6 0.6058 4.1530 2.7617 17 6 -0.3881 3.3435 3.2725 18 6 -0.2010 1.9614 3.3229 19 6 -1.2615 1.0882 3.8694 20 8 -1.0959 -0.1153 3.9116 21 7 -2.4116 1.6264 4.3206 22 6 -3.4627 0.7610 4.8616 23 6 0.9920 1.4072 2.8557 24 1 -1.0502 -0.0005 0.0000 25 1 3.0094 -0.2196 -1.0038 26 1 3.0097 -0.7581 0.6928 27 1 1.6790 1.2580 -3.0154 28 1 4.0770 2.3458 1.9836 29 1 3.4857 0.7185 2.3969 30 1 2.5562 4.2343 1.8918 31 1 0.4624 5.2226 2.7222 32 1 -1.3087 3.7785 3.6327 33 1 -2.5439 2.5868 4.2866 34 1 -3.7847 0.0571 4.0941 35 1 -3.0751 0.2112 5.7192 36 1 -4.3107 1.3708 5.1736 37 1 1.1431 0.3385 2.8923 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491754043.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:23 Heat of formation + Delta-G solvation = 56.463504 kcal Electronic energy + Delta-G solvation = -20616.399099 eV Core-core repulsion = 17553.570818 eV Total energy + Delta-G solvation = -3062.828281 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.13764 -39.50443 -37.64935 -35.72311 -33.83974 -33.41418 -32.02281 -31.68163 -28.24825 -27.80496 -27.19376 -24.33428 -23.69116 -22.42040 -21.13396 -19.32062 -18.79513 -18.23656 -17.22880 -16.86996 -16.81626 -16.23149 -15.80913 -15.63949 -15.56356 -15.06623 -14.75150 -14.56579 -14.05640 -13.80807 -13.45771 -13.34467 -13.10104 -12.98319 -12.72989 -12.63132 -12.41779 -12.17221 -11.94489 -11.84380 -11.05065 -10.79116 -10.72683 -10.29907 -10.24368 -9.70729 -9.56679 -8.96148 -7.80493 -5.21170 0.00733 0.56950 1.49765 1.53017 1.59550 1.90649 2.24627 2.37758 2.56639 2.64729 3.01576 3.32686 3.79878 3.92665 3.97605 4.07636 4.10178 4.30814 4.44833 4.48985 4.57037 4.61402 4.77766 4.86385 4.93013 5.02307 5.07462 5.17488 5.29918 5.37974 5.43394 5.55648 5.63292 5.70250 5.83905 6.10424 6.29181 6.51987 7.10138 7.20345 7.39465 7.82751 8.26663 9.20903 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.024346 B = 0.005534 C = 0.005146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.822971 B = 5058.557510 C = 5439.774423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.300 4.300 2 C -0.111 4.111 3 C 0.268 3.732 4 N -0.587 5.587 5 C -0.261 4.261 6 H 0.083 0.917 7 C -0.045 4.045 8 N -0.913 5.913 9 Si 0.960 3.040 10 H -0.288 1.288 11 H -0.306 1.306 12 H -0.268 1.268 13 C 0.173 3.827 14 C -0.107 4.107 15 C -0.087 4.087 16 C -0.130 4.130 17 C -0.090 4.090 18 C -0.159 4.159 19 C 0.556 3.444 20 O -0.583 6.583 21 N -0.719 5.719 22 C 0.084 3.916 23 C -0.057 4.057 24 H 0.201 0.799 25 H 0.072 0.928 26 H 0.060 0.940 27 H 0.244 0.756 28 H 0.075 0.925 29 H 0.063 0.937 30 H 0.125 0.875 31 H 0.155 0.845 32 H 0.159 0.841 33 H 0.417 0.583 34 H 0.046 0.954 35 H 0.053 0.947 36 H 0.118 0.882 37 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.654 5.570 13.238 15.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.319 4.319 2 C -0.114 4.114 3 C 0.142 3.858 4 N -0.305 5.305 5 C -0.390 4.390 6 H 0.101 0.899 7 C -0.242 4.242 8 N -0.558 5.558 9 Si 0.789 3.211 10 H -0.215 1.215 11 H -0.233 1.233 12 H -0.193 1.193 13 C 0.048 3.952 14 C -0.110 4.110 15 C -0.106 4.106 16 C -0.148 4.148 17 C -0.109 4.109 18 C -0.162 4.162 19 C 0.345 3.655 20 O -0.465 6.465 21 N -0.371 5.371 22 C -0.059 4.059 23 C -0.077 4.077 24 H 0.218 0.782 25 H 0.090 0.910 26 H 0.078 0.922 27 H 0.054 0.946 28 H 0.093 0.907 29 H 0.082 0.918 30 H 0.143 0.857 31 H 0.173 0.827 32 H 0.177 0.823 33 H 0.254 0.746 34 H 0.064 0.936 35 H 0.071 0.929 36 H 0.136 0.864 37 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -6.566 4.690 13.127 15.409 hybrid contribution -0.200 0.505 -1.343 1.448 sum -6.765 5.195 11.785 14.548 Atomic orbital electron populations 1.24529 0.95908 1.04799 1.06652 1.24450 0.95741 0.96199 0.95041 1.17815 0.82722 0.86272 0.98966 1.44488 1.74108 1.11064 1.00861 1.19526 1.25442 1.05200 0.88858 0.89934 1.25560 0.97113 1.01159 1.00329 1.70331 1.22812 1.44504 1.18151 0.85378 0.77750 0.78540 0.79393 1.21510 1.23307 1.19256 1.20191 0.92459 0.98759 0.83775 1.20988 0.99354 0.94351 0.96354 1.21415 0.98464 0.94445 0.96289 1.21379 0.93080 1.01262 0.99064 1.21451 0.99991 0.91058 0.98415 1.19902 0.95306 0.94791 1.06214 1.18557 0.82919 0.87175 0.76881 1.90727 1.81087 1.16872 1.57768 1.45614 1.16035 1.12135 1.63329 1.21718 0.90243 0.95609 0.98320 1.20900 0.92601 0.98823 0.95343 0.78214 0.91002 0.92200 0.94608 0.90708 0.91840 0.85705 0.82692 0.82328 0.74557 0.93551 0.92857 0.86361 0.88293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.30 -14.87 19.02 74.32 1.41 -13.45 16 2 C -0.11 -5.69 10.28 31.13 0.32 -5.37 16 3 C 0.27 13.05 5.45 84.58 0.46 13.51 16 4 N -0.59 -27.96 2.49 -716.90 -1.78 -29.74 16 5 C -0.26 -13.39 9.66 84.03 0.81 -12.58 16 6 H 0.08 4.06 7.91 -2.91 -0.02 4.03 16 7 C -0.05 -2.42 4.84 84.86 0.41 -2.01 16 8 N -0.91 -52.53 9.49 21.65 0.21 -52.32 16 9 Si 0.96 43.73 29.61 68.60 2.03 45.76 16 10 H -0.29 -13.04 7.11 99.48 0.71 -12.34 16 11 H -0.31 -14.43 7.11 99.48 0.71 -13.72 16 12 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 13 C 0.17 6.84 5.82 85.63 0.50 7.33 16 14 C -0.11 -4.13 5.22 -19.90 -0.10 -4.23 16 15 C -0.09 -2.96 9.69 22.33 0.22 -2.74 16 16 C -0.13 -3.56 10.03 22.23 0.22 -3.34 16 17 C -0.09 -2.36 9.54 22.53 0.21 -2.15 16 18 C -0.16 -5.35 5.87 -20.09 -0.12 -5.47 16 19 C 0.56 18.37 7.77 86.79 0.67 19.04 16 20 O -0.58 -24.32 16.35 -3.88 -0.06 -24.38 16 21 N -0.72 -15.75 5.66 -487.49 -2.76 -18.51 16 22 C 0.08 1.48 10.70 127.77 1.37 2.85 16 23 C -0.06 -2.23 7.94 22.53 0.18 -2.05 16 24 H 0.20 8.84 7.80 -4.41 -0.03 8.80 16 25 H 0.07 3.84 6.43 -2.39 -0.02 3.83 16 26 H 0.06 2.58 7.97 -2.39 -0.02 2.56 16 27 H 0.24 14.02 8.31 -92.71 -0.77 13.25 16 28 H 0.07 2.69 7.97 -2.39 -0.02 2.67 16 29 H 0.06 2.31 7.89 -2.38 -0.02 2.29 16 30 H 0.12 4.07 8.06 -2.91 -0.02 4.05 16 31 H 0.16 3.10 8.06 -2.91 -0.02 3.07 16 32 H 0.16 2.58 6.41 -2.91 -0.02 2.56 16 33 H 0.42 6.07 6.86 -92.71 -0.64 5.44 16 34 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.12 1.01 8.14 -2.38 -0.02 0.99 16 37 H 0.10 4.32 7.65 -2.91 -0.02 4.30 16 Total: -1.00 -71.60 322.52 4.64 -66.96 By element: Atomic # 1 Polarization: 22.45 SS G_CDS: 0.44 Total: 22.89 kcal Atomic # 6 Polarization: -17.22 SS G_CDS: 6.57 Total: -10.65 kcal Atomic # 7 Polarization: -96.23 SS G_CDS: -4.34 Total: -100.57 kcal Atomic # 8 Polarization: -24.32 SS G_CDS: -0.06 Total: -24.38 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.76 kcal Total: -71.60 4.64 -66.96 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491754043.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.425 kcal (2) G-P(sol) polarization free energy of solvation -71.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.961 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds