Wall clock time and date at job start Mon Mar 30 2020 01:42:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46493 * 109.47373 * 71.65896 * 3 2 1 5 5 C 1.46503 * 120.00127 * 269.99530 * 4 3 2 6 6 C 1.53003 * 109.47345 * 270.00349 * 5 4 3 7 7 C 1.34774 * 120.00242 * 89.99520 * 4 3 2 8 8 O 1.21591 * 119.99844 * 0.02562 * 7 4 3 9 9 N 1.34780 * 119.99951 * 179.97438 * 7 4 3 10 10 C 1.39958 * 119.99656 * 174.30462 * 9 7 4 11 11 C 1.39287 * 119.94643 * 145.34393 * 10 9 7 12 12 C 1.38491 * 120.43160 * 179.97438 * 11 10 9 13 13 C 1.37680 * 120.31968 * 0.30214 * 12 11 10 14 14 C 1.40743 * 119.88278 * 359.43753 * 13 12 11 15 15 C 1.41405 * 120.21265 * 180.31590 * 14 13 12 16 16 H 1.07997 * 120.00192 * 214.57156 * 15 14 13 17 17 C 1.39939 * 120.00096 * 34.56002 * 15 14 13 18 18 N 1.30831 * 119.99782 * 5.44923 * 17 15 14 19 19 Si 1.86796 * 120.00126 * 185.44672 * 17 15 14 20 20 H 1.48508 * 109.47215 * 90.00126 * 19 17 15 21 21 H 1.48495 * 109.47149 * 210.00372 * 19 17 15 22 22 H 1.48507 * 109.47197 * 330.00383 * 19 17 15 23 23 C 1.38238 * 119.94955 * 325.32835 * 10 9 7 24 24 H 4.40633 * 5.51499 * 180.02562 * 4 1 2 25 25 H 1.09003 * 109.46912 * 311.65400 * 3 2 1 26 26 H 1.09006 * 109.46597 * 191.66042 * 3 2 1 27 27 H 1.09010 * 109.46811 * 30.00138 * 5 4 3 28 28 H 1.08998 * 109.47455 * 149.99878 * 5 4 3 29 29 H 1.09003 * 109.47074 * 179.97438 * 6 5 4 30 30 H 1.09003 * 109.46766 * 299.99991 * 6 5 4 31 31 H 1.09003 * 109.46780 * 59.99484 * 6 5 4 32 32 H 0.96991 * 120.00147 * 354.30842 * 9 7 4 33 33 H 1.08005 * 119.78201 * 0.02562 * 11 10 9 34 34 H 1.07996 * 119.83789 * 180.02562 * 12 11 10 35 35 H 1.07998 * 120.05787 * 179.70027 * 13 12 11 36 36 H 0.96995 * 119.99950 * 180.02562 * 18 17 15 37 37 H 1.07993 * 120.16012 * 359.97406 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1346 -0.4337 -1.3110 5 6 3.3795 -1.8552 -1.5673 6 6 4.8247 -2.1981 -1.2000 7 6 3.3588 0.4743 -2.2814 8 8 3.1559 1.6541 -2.0686 9 7 3.8087 0.0746 -3.4873 10 6 3.9281 0.9992 -4.5312 11 6 4.9650 0.8769 -5.4532 12 6 5.0923 1.7858 -6.4903 13 6 4.1980 2.8248 -6.6177 14 6 3.1420 2.9579 -5.6968 15 6 2.2156 4.0186 -5.8249 16 1 1.7936 4.4765 -4.9425 17 6 1.8457 4.4750 -7.0950 18 7 2.2731 3.8529 -8.1637 19 14 0.7418 5.9723 -7.2646 20 1 1.5776 7.1975 -7.3404 21 1 -0.0712 5.8503 -8.5011 22 1 -0.1585 6.0595 -6.0868 23 6 3.0167 2.0322 -4.6458 24 1 -1.0499 0.0001 -0.0003 25 1 3.0096 -0.6822 0.7679 26 1 3.0088 1.0074 0.2077 27 1 2.6989 -2.4558 -0.9636 28 1 3.2127 -2.0681 -2.6231 29 1 5.0068 -3.2558 -1.3902 30 1 5.5052 -1.5975 -1.8036 31 1 4.9915 -1.9852 -0.1440 32 1 4.0498 -0.8537 -3.6318 33 1 5.6738 0.0674 -5.3591 34 1 5.8996 1.6816 -7.2001 35 1 4.3041 3.5340 -7.4253 36 1 2.0170 4.1694 -9.0440 37 1 2.2121 2.1275 -3.9318 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491779428.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:37 Heat of formation + Delta-G solvation = 34.982722 kcal Electronic energy + Delta-G solvation = -20160.875886 eV Core-core repulsion = 17097.116128 eV Total energy + Delta-G solvation = -3063.759758 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.69805 -39.34042 -37.31729 -36.27501 -34.97691 -33.99568 -31.73184 -31.45844 -30.15240 -27.74010 -27.17856 -24.48310 -23.12783 -22.71559 -20.97203 -19.90430 -19.22365 -18.70193 -17.66726 -17.13779 -16.73966 -16.46470 -16.08483 -15.53673 -15.23282 -14.90551 -14.73938 -14.57886 -14.15465 -13.94298 -13.56692 -13.52854 -12.99724 -12.90723 -12.83698 -12.79786 -12.20676 -12.15555 -11.92937 -11.62559 -11.49200 -11.19783 -11.13506 -11.02031 -10.77134 -9.96230 -9.31283 -8.71730 -8.51538 -6.39914 0.89803 0.99887 1.27922 1.35750 1.46865 1.50689 1.85563 2.08849 2.17787 2.23300 2.79313 2.97793 3.50527 3.69715 3.98041 4.22104 4.32201 4.46496 4.52295 4.57493 4.61005 4.87738 4.93177 5.02721 5.04214 5.09716 5.13087 5.14444 5.32723 5.36771 5.49163 5.69210 5.82482 5.99547 6.07144 6.13950 6.38038 6.63684 6.69674 6.90592 6.95808 7.01623 7.52716 8.42284 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.020042 B = 0.004998 C = 0.004152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1396.747977 B = 5600.634094 C = 6742.866759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.237 4.237 3 C 0.238 3.762 4 N -0.619 5.619 5 C 0.097 3.903 6 C -0.167 4.167 7 C 0.696 3.304 8 O -0.616 6.616 9 N -0.668 5.668 10 C 0.168 3.832 11 C -0.237 4.237 12 C -0.093 4.093 13 C -0.182 4.182 14 C 0.089 3.911 15 C -0.509 4.509 16 H 0.058 0.942 17 C 0.035 3.965 18 N -0.838 5.838 19 Si 0.983 3.017 20 H -0.259 1.259 21 H -0.262 1.262 22 H -0.268 1.268 23 C -0.225 4.225 24 H 0.243 0.757 25 H 0.144 0.856 26 H 0.087 0.913 27 H 0.106 0.894 28 H 0.076 0.924 29 H 0.094 0.906 30 H 0.044 0.956 31 H 0.068 0.932 32 H 0.415 0.585 33 H 0.135 0.865 34 H 0.128 0.872 35 H 0.102 0.898 36 H 0.286 0.714 37 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.051 -13.678 11.416 17.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.238 4.238 3 C 0.116 3.884 4 N -0.355 5.355 5 C -0.025 4.025 6 C -0.225 4.225 7 C 0.398 3.602 8 O -0.495 6.495 9 N -0.318 5.318 10 C 0.075 3.925 11 C -0.258 4.258 12 C -0.112 4.112 13 C -0.202 4.202 14 C 0.087 3.913 15 C -0.540 4.540 16 H 0.076 0.924 17 C -0.177 4.177 18 N -0.465 5.465 19 Si 0.804 3.196 20 H -0.184 1.184 21 H -0.186 1.186 22 H -0.193 1.193 23 C -0.247 4.247 24 H 0.259 0.741 25 H 0.162 0.838 26 H 0.105 0.895 27 H 0.124 0.876 28 H 0.095 0.905 29 H 0.112 0.888 30 H 0.063 0.937 31 H 0.087 0.913 32 H 0.255 0.745 33 H 0.153 0.847 34 H 0.146 0.854 35 H 0.120 0.880 36 H 0.097 0.903 37 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 1.903 -12.900 11.362 17.295 hybrid contribution -0.821 0.504 -0.296 1.007 sum 1.082 -12.396 11.065 16.652 Atomic orbital electron populations 1.25759 0.96995 1.00298 0.97825 1.24210 0.96097 1.01181 1.02331 1.18347 0.82931 1.03040 0.84095 1.47259 1.68779 1.07391 1.12085 1.21873 0.98942 0.78928 1.02722 1.22212 0.94580 1.03088 1.02654 1.16197 0.78194 0.84876 0.80952 1.90951 1.59414 1.17840 1.81279 1.42481 1.68571 1.12203 1.08532 1.17348 0.94892 0.91529 0.88778 1.20506 1.00395 1.05071 0.99864 1.20867 0.98485 0.94400 0.97407 1.21297 0.95958 1.00824 1.02137 1.17822 0.91429 0.91366 0.90702 1.19661 1.24299 1.16674 0.93375 0.92402 1.26622 0.97075 0.99637 0.94388 1.69822 1.39473 1.37747 0.99480 0.85198 0.78144 0.77635 0.78607 1.18356 1.18591 1.19261 1.21014 1.01364 0.99329 1.02970 0.74102 0.83837 0.89461 0.87612 0.90538 0.88775 0.93681 0.91331 0.74538 0.84710 0.85436 0.87982 0.90323 0.90358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.68 19.25 74.32 1.43 -3.25 16 2 C -0.24 -6.39 13.68 31.12 0.43 -5.97 16 3 C 0.24 5.68 5.88 84.57 0.50 6.18 16 4 N -0.62 -16.45 2.43 -850.43 -2.07 -18.52 16 5 C 0.10 1.60 5.84 86.38 0.50 2.10 16 6 C -0.17 -2.10 10.24 71.98 0.74 -1.36 16 7 C 0.70 26.71 7.99 179.05 1.43 28.14 16 8 O -0.62 -30.63 13.72 -4.00 -0.05 -30.69 16 9 N -0.67 -24.46 5.17 -317.31 -1.64 -26.09 16 10 C 0.17 7.84 6.25 38.10 0.24 8.07 16 11 C -0.24 -10.03 9.97 22.58 0.23 -9.81 16 12 C -0.09 -4.26 10.02 22.20 0.22 -4.04 16 13 C -0.18 -9.98 8.62 22.75 0.20 -9.79 16 14 C 0.09 5.31 5.50 -21.31 -0.12 5.19 16 15 C -0.51 -30.66 9.04 23.46 0.21 -30.45 16 16 H 0.06 3.53 7.85 -2.91 -0.02 3.51 16 17 C 0.04 1.93 5.31 85.25 0.45 2.38 16 18 N -0.84 -46.19 10.98 21.83 0.24 -45.95 16 19 Si 0.98 41.78 29.56 68.60 2.03 43.81 16 20 H -0.26 -10.50 7.11 99.48 0.71 -9.80 16 21 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16 22 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 23 C -0.22 -12.65 8.39 22.85 0.19 -12.46 16 24 H 0.24 4.08 7.80 -4.42 -0.03 4.04 16 25 H 0.14 2.02 8.07 -2.39 -0.02 2.00 16 26 H 0.09 2.46 7.42 -2.38 -0.02 2.44 16 27 H 0.11 1.28 8.07 -2.38 -0.02 1.27 16 28 H 0.08 1.26 6.45 -2.39 -0.02 1.25 16 29 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.42 11.34 6.64 -92.71 -0.62 10.73 16 33 H 0.14 4.49 8.06 -2.91 -0.02 4.46 16 34 H 0.13 4.90 8.06 -2.91 -0.02 4.87 16 35 H 0.10 5.81 6.49 -2.91 -0.02 5.79 16 36 H 0.29 14.21 8.30 -92.71 -0.77 13.44 16 37 H 0.08 4.75 6.52 -2.91 -0.02 4.73 16 Total: -1.00 -77.54 323.29 5.62 -71.93 By element: Atomic # 1 Polarization: 30.11 SS G_CDS: 0.46 Total: 30.57 kcal Atomic # 6 Polarization: -31.70 SS G_CDS: 6.65 Total: -25.06 kcal Atomic # 7 Polarization: -87.09 SS G_CDS: -3.47 Total: -90.56 kcal Atomic # 8 Polarization: -30.63 SS G_CDS: -0.05 Total: -30.69 kcal Atomic # 14 Polarization: 41.78 SS G_CDS: 2.03 Total: 43.81 kcal Total: -77.54 5.62 -71.93 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491779428.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.910 kcal (2) G-P(sol) polarization free energy of solvation -77.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.927 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds