Wall clock time and date at job start Mon Mar 30 2020 01:08:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50699 * 119.99819 * 2 1 4 4 N 1.46496 * 109.47350 * 125.00179 * 3 2 1 5 5 C 1.46505 * 119.99931 * 269.99854 * 4 3 2 6 6 C 1.50697 * 109.47089 * 269.99595 * 5 4 3 7 7 H 1.07999 * 119.99659 * 0.02562 * 6 5 4 8 8 C 1.37873 * 120.00028 * 179.97438 * 6 5 4 9 9 N 1.31510 * 120.00400 * 180.02562 * 8 6 5 10 10 Si 1.86807 * 119.99816 * 359.97438 * 8 6 5 11 11 H 1.48508 * 109.46696 * 90.00307 * 10 8 6 12 12 H 1.48501 * 109.47054 * 209.99571 * 10 8 6 13 13 H 1.48494 * 109.47358 * 330.00177 * 10 8 6 14 14 C 1.34777 * 120.00344 * 89.99402 * 4 3 2 15 15 O 1.21693 * 120.00201 * 180.02562 * 14 4 3 16 16 C 1.46425 * 119.99668 * 0.02562 * 14 4 3 17 17 C 1.34808 * 119.99920 * 179.97438 * 16 14 4 18 18 C 1.47207 * 120.00030 * 179.72181 * 17 16 14 19 19 C 1.40274 * 120.58671 * 180.27503 * 18 17 16 20 20 C 1.38285 * 118.26464 * 179.97438 * 19 18 17 21 21 C 1.38390 * 119.33667 * 0.02562 * 20 19 18 22 22 N 1.31936 * 121.14240 * 0.02562 * 21 20 19 23 23 C 1.31666 * 121.90014 * 359.67580 * 22 21 20 24 24 H 1.07997 * 119.99963 * 180.02562 * 1 2 3 25 25 H 1.08005 * 120.00122 * 359.97438 * 1 2 3 26 26 H 1.07998 * 119.99899 * 179.97438 * 2 1 3 27 27 H 1.08995 * 109.47562 * 4.99714 * 3 2 1 28 28 H 1.09002 * 109.47106 * 245.00032 * 3 2 1 29 29 H 1.08997 * 109.46629 * 30.00188 * 5 4 3 30 30 H 1.08999 * 109.46571 * 149.99595 * 5 4 3 31 31 H 0.96996 * 120.00499 * 179.97438 * 9 8 6 32 32 H 1.08001 * 120.00362 * 0.02562 * 16 14 4 33 33 H 1.08002 * 120.00248 * 0.02562 * 17 16 14 34 34 H 1.07993 * 120.86536 * 359.96328 * 19 18 17 35 35 H 1.08004 * 120.32758 * 180.02562 * 20 19 18 36 36 H 1.08006 * 119.42923 * 179.97438 * 21 20 19 37 37 H 1.08003 * 119.73852 * 180.29384 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9937 1.3320 1.1314 5 6 2.5588 1.8651 2.4248 6 6 2.8442 3.3437 2.4803 7 1 3.3033 3.8371 1.6364 8 6 2.5184 4.0668 3.6081 9 7 2.7670 5.3573 3.6564 10 14 1.7225 3.2137 5.0670 11 1 2.7778 2.7227 5.9893 12 1 0.8460 4.1742 5.7843 13 1 0.9112 2.0662 4.5873 14 6 4.2497 0.8662 0.9824 15 8 5.0223 0.8881 1.9223 16 6 4.6845 0.3338 -0.3105 17 6 5.9408 -0.1316 -0.4597 18 6 6.3761 -0.6724 -1.7578 19 6 7.6787 -1.1652 -1.9252 20 6 8.0365 -1.6626 -3.1648 21 6 7.1078 -1.6582 -4.1909 22 7 5.8892 -1.1876 -4.0062 23 6 5.4970 -0.7084 -2.8443 24 1 -0.5400 -0.9353 0.0004 25 1 -0.5400 0.9353 0.0004 26 1 1.8500 -0.9353 0.0004 27 1 1.3586 2.1316 0.0895 28 1 2.6212 1.4026 -0.9314 29 1 1.4888 1.6966 2.5459 30 1 3.0989 1.3604 3.2258 31 1 2.5375 5.8661 4.4497 32 1 3.9989 0.3148 -1.1449 33 1 6.6266 -0.1122 0.3744 34 1 8.3838 -1.1561 -1.1072 35 1 9.0307 -2.0507 -3.3306 36 1 7.3857 -2.0460 -5.1599 37 1 4.4895 -0.3362 -2.7307 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493815638.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:08 Heat of formation + Delta-G solvation = 45.393235 kcal Electronic energy + Delta-G solvation = -19660.585194 eV Core-core repulsion = 16597.276870 eV Total energy + Delta-G solvation = -3063.308324 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.30066 -39.19104 -35.86583 -34.54326 -33.18544 -32.48223 -32.12434 -30.11312 -28.24639 -25.69768 -24.74762 -23.76023 -22.56368 -20.59851 -19.89776 -18.33122 -17.60065 -16.92498 -16.83034 -16.23244 -15.60751 -15.03750 -14.72000 -14.38387 -14.14808 -13.94972 -13.87088 -13.30792 -13.15536 -13.03068 -12.38271 -11.97224 -11.95526 -11.71553 -11.56970 -11.24781 -10.95878 -10.82337 -10.53258 -10.15851 -9.86948 -9.68457 -9.57106 -9.29077 -9.16015 -8.59380 -8.52083 -7.75909 -6.09143 -4.08145 0.35129 1.02008 1.99587 2.35900 3.29208 3.35243 3.37149 3.60239 3.79770 3.94779 4.18739 4.39331 4.56278 4.59467 4.66958 4.78192 5.04998 5.09293 5.21517 5.25305 5.30137 5.36295 5.56864 5.60833 5.79183 5.86104 5.94148 6.12102 6.27201 6.34786 6.48490 6.71108 6.72459 6.83498 6.94411 7.31941 7.60028 7.72128 8.19146 8.45590 8.88423 8.95533 9.50908 11.04165 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.023735 B = 0.004145 C = 0.003751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.431629 B = 6753.868858 C = 7462.311524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.170 4.170 3 C 0.134 3.866 4 N -0.581 5.581 5 C 0.217 3.783 6 C -0.529 4.529 7 H 0.075 0.925 8 C 0.073 3.927 9 N -0.897 5.897 10 Si 0.875 3.125 11 H -0.273 1.273 12 H -0.285 1.285 13 H -0.265 1.265 14 C 0.536 3.464 15 O -0.540 6.540 16 C -0.179 4.179 17 C -0.049 4.049 18 C -0.109 4.109 19 C -0.060 4.060 20 C -0.173 4.173 21 C 0.095 3.905 22 N -0.484 5.484 23 C 0.110 3.890 24 H 0.095 0.905 25 H 0.100 0.900 26 H 0.106 0.894 27 H 0.091 0.909 28 H 0.079 0.921 29 H 0.031 0.969 30 H 0.037 0.963 31 H 0.265 0.735 32 H 0.128 0.872 33 H 0.138 0.862 34 H 0.140 0.860 35 H 0.137 0.863 36 H 0.155 0.845 37 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.997 -14.813 -13.886 20.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.190 4.190 3 C 0.010 3.990 4 N -0.311 5.311 5 C 0.096 3.904 6 C -0.568 4.568 7 H 0.093 0.907 8 C -0.129 4.129 9 N -0.535 5.535 10 Si 0.702 3.298 11 H -0.199 1.199 12 H -0.210 1.210 13 H -0.190 1.190 14 C 0.325 3.675 15 O -0.419 6.419 16 C -0.200 4.200 17 C -0.070 4.070 18 C -0.111 4.111 19 C -0.086 4.086 20 C -0.193 4.193 21 C -0.061 4.061 22 N -0.192 5.192 23 C -0.047 4.047 24 H 0.113 0.887 25 H 0.118 0.882 26 H 0.124 0.876 27 H 0.109 0.891 28 H 0.097 0.903 29 H 0.049 0.951 30 H 0.055 0.945 31 H 0.075 0.925 32 H 0.146 0.854 33 H 0.156 0.844 34 H 0.157 0.843 35 H 0.155 0.845 36 H 0.173 0.827 37 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 3.773 -14.612 -13.946 20.549 hybrid contribution 0.141 -0.251 1.479 1.507 sum 3.914 -14.864 -12.467 19.791 Atomic orbital electron populations 1.23852 0.95849 1.01865 1.00398 1.23466 0.96435 0.99030 1.00042 1.20666 0.93064 0.95480 0.89746 1.47806 1.10573 1.59600 1.13075 1.19679 0.94987 0.95187 0.80524 1.21324 1.41234 0.91067 1.03167 0.90683 1.24843 0.95259 0.94713 0.98110 1.69891 1.47756 1.06596 1.29299 0.86867 0.79902 0.79699 0.83354 1.19889 1.21042 1.19001 1.18124 0.82366 0.78919 0.88086 1.90784 1.52554 1.56781 1.41829 1.23319 0.97237 1.01366 0.98082 1.22158 0.96281 0.93952 0.94576 1.20115 0.95069 1.00667 0.95221 1.21850 0.95131 0.93965 0.97651 1.22098 1.01398 1.01728 0.94039 1.22870 0.88844 0.95251 0.99155 1.67649 1.17777 1.09661 1.24090 1.23160 0.99671 0.94511 0.87375 0.88705 0.88183 0.87601 0.89071 0.90273 0.95088 0.94490 0.92542 0.85437 0.84380 0.84254 0.84548 0.82749 0.82298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.19 14.32 29.01 0.42 -1.78 16 2 C -0.17 -2.27 9.85 -36.03 -0.35 -2.62 16 3 C 0.13 2.09 5.56 -5.20 -0.03 2.06 16 4 N -0.58 -11.90 2.44 -178.08 -0.43 -12.33 16 5 C 0.22 5.31 4.23 -5.19 -0.02 5.29 16 6 C -0.53 -15.21 9.94 -34.44 -0.34 -15.55 16 7 H 0.08 2.36 8.06 -52.49 -0.42 1.94 16 8 C 0.07 2.13 5.47 -17.82 -0.10 2.04 16 9 N -0.90 -27.67 13.96 55.43 0.77 -26.89 16 10 Si 0.87 21.60 27.47 -169.99 -4.67 16.93 16 11 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 12 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 13 H -0.27 -6.18 6.54 56.52 0.37 -5.81 16 14 C 0.54 10.91 7.60 -12.96 -0.10 10.81 16 15 O -0.54 -13.22 15.81 5.20 0.08 -13.14 16 16 C -0.18 -2.67 8.62 -37.50 -0.32 -2.99 16 17 C -0.05 -0.66 9.48 -37.16 -0.35 -1.01 16 18 C -0.11 -1.25 5.88 -104.91 -0.62 -1.86 16 19 C -0.06 -0.58 9.95 -38.80 -0.39 -0.96 16 20 C -0.17 -1.41 10.09 -39.51 -0.40 -1.81 16 21 C 0.10 0.87 11.17 -17.45 -0.19 0.67 16 22 N -0.48 -5.60 10.34 -12.83 -0.13 -5.73 16 23 C 0.11 1.26 10.59 -17.04 -0.18 1.08 16 24 H 0.09 0.98 8.06 -52.49 -0.42 0.56 16 25 H 0.10 1.18 7.84 -52.48 -0.41 0.77 16 26 H 0.11 1.33 8.06 -52.49 -0.42 0.90 16 27 H 0.09 1.49 7.72 -51.93 -0.40 1.09 16 28 H 0.08 1.03 6.09 -51.93 -0.32 0.71 16 29 H 0.03 0.73 7.13 -51.93 -0.37 0.36 16 30 H 0.04 0.97 6.85 -51.93 -0.36 0.61 16 31 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 32 H 0.13 1.51 4.25 -52.49 -0.22 1.29 16 33 H 0.14 1.95 7.52 -52.49 -0.39 1.56 16 34 H 0.14 1.06 8.06 -52.49 -0.42 0.64 16 35 H 0.14 0.71 8.06 -52.48 -0.42 0.29 16 36 H 0.16 0.95 8.06 -52.48 -0.42 0.53 16 37 H 0.16 1.56 6.19 -52.48 -0.32 1.24 16 LS Contribution 323.77 15.07 4.88 4.88 Total: -1.00 -34.85 323.77 -6.98 -41.84 By element: Atomic # 1 Polarization: 5.60 SS G_CDS: -4.50 Total: 1.09 kcal Atomic # 6 Polarization: -3.66 SS G_CDS: -2.98 Total: -6.64 kcal Atomic # 7 Polarization: -45.16 SS G_CDS: 0.21 Total: -44.95 kcal Atomic # 8 Polarization: -13.22 SS G_CDS: 0.08 Total: -13.14 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -4.67 Total: 16.93 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -34.85 -6.98 -41.84 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493815638.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.229 kcal (2) G-P(sol) polarization free energy of solvation -34.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.835 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds