Wall clock time and date at job start Mon Mar 30 2020 01:08:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50699 * 119.99819 * 2 1 4 4 N 1.46496 * 109.47350 * 125.00179 * 3 2 1 5 5 C 1.46505 * 119.99931 * 269.99854 * 4 3 2 6 6 C 1.50697 * 109.47089 * 269.99595 * 5 4 3 7 7 H 1.07999 * 119.99659 * 0.02562 * 6 5 4 8 8 C 1.37873 * 120.00028 * 179.97438 * 6 5 4 9 9 N 1.31510 * 120.00400 * 180.02562 * 8 6 5 10 10 Si 1.86807 * 119.99816 * 359.97438 * 8 6 5 11 11 H 1.48508 * 109.46696 * 90.00307 * 10 8 6 12 12 H 1.48501 * 109.47054 * 209.99571 * 10 8 6 13 13 H 1.48494 * 109.47358 * 330.00177 * 10 8 6 14 14 C 1.34777 * 120.00344 * 89.99402 * 4 3 2 15 15 O 1.21693 * 120.00201 * 180.02562 * 14 4 3 16 16 C 1.46425 * 119.99668 * 0.02562 * 14 4 3 17 17 C 1.34808 * 119.99920 * 179.97438 * 16 14 4 18 18 C 1.47207 * 120.00030 * 179.72181 * 17 16 14 19 19 C 1.40274 * 120.58671 * 180.27503 * 18 17 16 20 20 C 1.38285 * 118.26464 * 179.97438 * 19 18 17 21 21 C 1.38390 * 119.33667 * 0.02562 * 20 19 18 22 22 N 1.31936 * 121.14240 * 0.02562 * 21 20 19 23 23 C 1.31666 * 121.90014 * 359.67580 * 22 21 20 24 24 H 1.07997 * 119.99963 * 180.02562 * 1 2 3 25 25 H 1.08005 * 120.00122 * 359.97438 * 1 2 3 26 26 H 1.07998 * 119.99899 * 179.97438 * 2 1 3 27 27 H 1.08995 * 109.47562 * 4.99714 * 3 2 1 28 28 H 1.09002 * 109.47106 * 245.00032 * 3 2 1 29 29 H 1.08997 * 109.46629 * 30.00188 * 5 4 3 30 30 H 1.08999 * 109.46571 * 149.99595 * 5 4 3 31 31 H 0.96996 * 120.00499 * 179.97438 * 9 8 6 32 32 H 1.08001 * 120.00362 * 0.02562 * 16 14 4 33 33 H 1.08002 * 120.00248 * 0.02562 * 17 16 14 34 34 H 1.07993 * 120.86536 * 359.96328 * 19 18 17 35 35 H 1.08004 * 120.32758 * 180.02562 * 20 19 18 36 36 H 1.08006 * 119.42923 * 179.97438 * 21 20 19 37 37 H 1.08003 * 119.73852 * 180.29384 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9937 1.3320 1.1314 5 6 2.5588 1.8651 2.4248 6 6 2.8442 3.3437 2.4803 7 1 3.3033 3.8371 1.6364 8 6 2.5184 4.0668 3.6081 9 7 2.7670 5.3573 3.6564 10 14 1.7225 3.2137 5.0670 11 1 2.7778 2.7227 5.9893 12 1 0.8460 4.1742 5.7843 13 1 0.9112 2.0662 4.5873 14 6 4.2497 0.8662 0.9824 15 8 5.0223 0.8881 1.9223 16 6 4.6845 0.3338 -0.3105 17 6 5.9408 -0.1316 -0.4597 18 6 6.3761 -0.6724 -1.7578 19 6 7.6787 -1.1652 -1.9252 20 6 8.0365 -1.6626 -3.1648 21 6 7.1078 -1.6582 -4.1909 22 7 5.8892 -1.1876 -4.0062 23 6 5.4970 -0.7084 -2.8443 24 1 -0.5400 -0.9353 0.0004 25 1 -0.5400 0.9353 0.0004 26 1 1.8500 -0.9353 0.0004 27 1 1.3586 2.1316 0.0895 28 1 2.6212 1.4026 -0.9314 29 1 1.4888 1.6966 2.5459 30 1 3.0989 1.3604 3.2258 31 1 2.5375 5.8661 4.4497 32 1 3.9989 0.3148 -1.1449 33 1 6.6266 -0.1122 0.3744 34 1 8.3838 -1.1561 -1.1072 35 1 9.0307 -2.0507 -3.3306 36 1 7.3857 -2.0460 -5.1599 37 1 4.4895 -0.3362 -2.7307 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493815638.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:08 Heat of formation + Delta-G solvation = 22.718304 kcal Electronic energy + Delta-G solvation = -19661.568453 eV Core-core repulsion = 16597.276870 eV Total energy + Delta-G solvation = -3064.291583 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.17360 -40.65013 -37.33731 -35.64019 -34.99027 -33.76297 -33.24541 -31.29561 -29.92758 -26.99493 -26.03414 -24.64578 -24.02411 -21.91625 -20.96019 -19.64882 -19.10439 -18.62452 -17.85699 -17.51251 -16.75483 -16.31919 -16.04303 -15.83787 -15.49134 -14.95418 -14.85541 -14.77029 -14.39130 -14.21206 -13.99404 -13.60127 -13.17860 -13.07669 -12.83663 -12.67003 -12.50773 -12.27706 -11.95130 -11.82273 -11.74432 -10.85145 -10.82272 -10.61697 -10.44317 -10.31932 -9.62908 -9.31242 -8.34944 -6.40299 -0.58148 0.29185 0.94680 1.30314 1.34378 1.35810 1.44712 2.29870 2.30305 2.45003 2.93238 2.99216 3.39852 3.54747 3.81585 3.92981 4.01626 4.05770 4.13165 4.19363 4.27038 4.44584 4.57444 4.74001 4.81298 4.84391 4.89410 4.97384 5.08100 5.11625 5.28826 5.39163 5.44144 5.53815 5.72119 5.72686 5.91809 6.22758 6.60768 6.64612 6.96571 7.19285 7.35864 8.82004 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.023735 B = 0.004145 C = 0.003751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.431629 B = 6753.868858 C = 7462.311524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.183 4.183 3 C 0.130 3.870 4 N -0.589 5.589 5 C 0.227 3.773 6 C -0.537 4.537 7 H 0.029 0.971 8 C 0.013 3.987 9 N -0.944 5.944 10 Si 0.946 3.054 11 H -0.275 1.275 12 H -0.273 1.273 13 H -0.239 1.239 14 C 0.528 3.472 15 O -0.598 6.598 16 C -0.200 4.200 17 C -0.019 4.019 18 C -0.132 4.132 19 C -0.061 4.061 20 C -0.166 4.166 21 C 0.096 3.904 22 N -0.510 5.510 23 C 0.106 3.894 24 H 0.118 0.882 25 H 0.100 0.900 26 H 0.116 0.884 27 H 0.079 0.921 28 H 0.103 0.897 29 H 0.048 0.952 30 H 0.019 0.981 31 H 0.269 0.731 32 H 0.159 0.841 33 H 0.126 0.874 34 H 0.156 0.844 35 H 0.172 0.828 36 H 0.185 0.815 37 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.756 -17.423 -15.323 23.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.202 4.202 3 C 0.008 3.992 4 N -0.318 5.318 5 C 0.105 3.895 6 C -0.576 4.576 7 H 0.048 0.952 8 C -0.185 4.185 9 N -0.584 5.584 10 Si 0.769 3.231 11 H -0.201 1.201 12 H -0.198 1.198 13 H -0.162 1.162 14 C 0.320 3.680 15 O -0.481 6.481 16 C -0.220 4.220 17 C -0.040 4.040 18 C -0.134 4.134 19 C -0.086 4.086 20 C -0.185 4.185 21 C -0.060 4.060 22 N -0.218 5.218 23 C -0.051 4.051 24 H 0.136 0.864 25 H 0.118 0.882 26 H 0.134 0.866 27 H 0.097 0.903 28 H 0.121 0.879 29 H 0.066 0.934 30 H 0.037 0.963 31 H 0.078 0.922 32 H 0.176 0.824 33 H 0.144 0.856 34 H 0.174 0.826 35 H 0.190 0.810 36 H 0.202 0.798 37 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 3.499 -17.238 -15.440 23.404 hybrid contribution 0.376 0.544 1.736 1.858 sum 3.875 -16.694 -13.703 21.943 Atomic orbital electron populations 1.24084 0.95427 1.03023 0.97925 1.23299 0.96771 0.97944 1.02200 1.20902 0.92581 0.96711 0.89018 1.47872 1.11727 1.59194 1.12973 1.19301 0.95471 0.92183 0.82551 1.21549 1.40703 0.93403 1.01941 0.95246 1.25829 0.95884 0.95352 1.01468 1.70041 1.49338 1.08466 1.30572 0.85736 0.79116 0.79391 0.78864 1.20100 1.19814 1.16240 1.18962 0.81650 0.77988 0.89408 1.90734 1.53931 1.59370 1.44097 1.23046 0.98659 1.04066 0.96257 1.22234 0.95269 0.91245 0.95210 1.20012 0.96418 1.02784 0.94185 1.22190 0.94540 0.92900 0.99001 1.22470 1.02744 1.00496 0.92840 1.23504 0.88124 0.93631 1.00722 1.67708 1.19263 1.10772 1.24088 1.23315 1.00118 0.94299 0.87370 0.86355 0.88182 0.86579 0.90280 0.87862 0.93403 0.96319 0.92204 0.82421 0.85606 0.82621 0.81042 0.79773 0.81530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.60 14.32 67.78 0.97 -2.63 16 2 C -0.18 -4.56 9.85 25.65 0.25 -4.30 16 3 C 0.13 4.01 5.56 85.63 0.48 4.49 16 4 N -0.59 -24.67 2.44 -835.55 -2.04 -26.71 16 5 C 0.23 11.35 4.23 85.63 0.36 11.72 16 6 C -0.54 -32.19 9.94 25.60 0.25 -31.94 16 7 H 0.03 1.97 8.06 -2.91 -0.02 1.94 16 8 C 0.01 0.77 5.47 84.65 0.46 1.23 16 9 N -0.94 -60.24 13.96 21.45 0.30 -59.94 16 10 Si 0.95 44.97 27.47 68.60 1.88 46.85 16 11 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 12 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 13 H -0.24 -10.27 6.54 99.48 0.65 -9.62 16 14 C 0.53 22.22 7.60 86.37 0.66 22.88 16 15 O -0.60 -30.77 15.81 -4.33 -0.07 -30.83 16 16 C -0.20 -5.96 8.62 23.62 0.20 -5.76 16 17 C -0.02 -0.51 9.48 23.84 0.23 -0.28 16 18 C -0.13 -2.83 5.88 -20.05 -0.12 -2.95 16 19 C -0.06 -1.01 9.95 22.78 0.23 -0.79 16 20 C -0.17 -2.10 10.09 22.32 0.23 -1.87 16 21 C 0.10 1.43 11.17 84.71 0.95 2.38 16 22 N -0.51 -10.62 10.34 -194.50 -2.01 -12.63 16 23 C 0.11 2.23 10.59 85.10 0.90 3.13 16 24 H 0.12 2.03 8.06 -2.91 -0.02 2.00 16 25 H 0.10 2.16 7.84 -2.91 -0.02 2.14 16 26 H 0.12 2.68 8.06 -2.91 -0.02 2.65 16 27 H 0.08 2.60 7.72 -2.39 -0.02 2.58 16 28 H 0.10 2.62 6.09 -2.39 -0.01 2.60 16 29 H 0.05 2.22 7.13 -2.39 -0.02 2.20 16 30 H 0.02 1.00 6.85 -2.39 -0.02 0.99 16 31 H 0.27 15.90 8.31 -92.71 -0.77 15.13 16 32 H 0.16 3.58 4.25 -2.91 -0.01 3.57 16 33 H 0.13 3.66 7.52 -2.91 -0.02 3.64 16 34 H 0.16 2.00 8.06 -2.91 -0.02 1.98 16 35 H 0.17 0.95 8.06 -2.91 -0.02 0.92 16 36 H 0.19 1.51 8.06 -2.91 -0.02 1.49 16 37 H 0.17 3.02 6.19 -2.91 -0.02 3.00 16 Total: -1.00 -79.96 323.77 5.12 -74.84 By element: Atomic # 1 Polarization: 12.11 SS G_CDS: 1.01 Total: 13.12 kcal Atomic # 6 Polarization: -10.74 SS G_CDS: 6.05 Total: -4.69 kcal Atomic # 7 Polarization: -95.52 SS G_CDS: -3.75 Total: -99.28 kcal Atomic # 8 Polarization: -30.77 SS G_CDS: -0.07 Total: -30.83 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 1.88 Total: 46.85 kcal Total: -79.96 5.12 -74.84 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493815638.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.555 kcal (2) G-P(sol) polarization free energy of solvation -79.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.837 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds