Wall clock time and date at job start Mon Mar 30 2020 01:50:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.37100 * 119.99658 * 2 1 4 4 H 1.08000 * 119.99808 * 142.82814 * 3 2 1 5 5 C 1.38943 * 120.00569 * 322.82613 * 3 2 1 6 6 N 1.31410 * 120.00647 * 158.40987 * 5 3 2 7 7 Si 1.86810 * 119.99848 * 338.41176 * 5 3 2 8 8 H 1.48495 * 109.47168 * 95.71471 * 7 5 3 9 9 H 1.48497 * 109.47342 * 215.72211 * 7 5 3 10 10 H 1.48506 * 109.46758 * 335.71586 * 7 5 3 11 11 C 1.34767 * 120.00257 * 180.02562 * 2 1 3 12 12 O 1.21296 * 120.00370 * 179.97438 * 11 2 1 13 13 C 1.50706 * 119.99958 * 359.97438 * 11 2 1 14 14 C 1.50706 * 109.46954 * 180.02562 * 13 11 2 15 15 C 1.34240 * 126.49659 * 265.01774 * 14 13 11 16 16 N 1.36827 * 109.92469 * 180.24651 * 15 14 13 17 17 C 1.46503 * 125.06009 * 179.73781 * 16 15 14 18 18 C 1.37681 * 109.87788 * 359.56214 * 16 15 14 19 19 C 1.39126 * 133.51110 * 180.02562 * 18 16 15 20 20 C 1.37749 * 119.78248 * 180.35510 * 19 18 16 21 21 C 1.38834 * 120.66418 * 0.04588 * 20 19 18 22 22 C 1.36624 * 120.52888 * 359.97438 * 21 20 19 23 23 C 1.39630 * 119.76480 * 359.97438 * 22 21 20 24 24 H 1.09006 * 109.47196 * 265.13440 * 1 2 3 25 25 H 1.09006 * 109.47434 * 25.13136 * 1 2 3 26 26 H 1.08992 * 109.47138 * 145.13645 * 1 2 3 27 27 H 0.96998 * 119.99937 * 180.02562 * 6 5 3 28 28 H 1.08993 * 109.47260 * 59.99994 * 13 11 2 29 29 H 1.08998 * 109.46695 * 299.99880 * 13 11 2 30 30 H 1.07999 * 125.03533 * 359.97438 * 15 14 13 31 31 H 1.09006 * 109.46940 * 90.02388 * 17 16 15 32 32 H 1.08991 * 109.47304 * 210.02631 * 17 16 15 33 33 H 1.08997 * 109.47302 * 330.02693 * 17 16 15 34 34 H 1.08002 * 120.11051 * 0.40535 * 19 18 16 35 35 H 1.08002 * 119.66674 * 180.02562 * 20 19 18 36 36 H 1.07997 * 119.73462 * 179.97438 * 21 20 19 37 37 H 1.08003 * 120.11787 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1504 1.1874 0.0000 4 1 3.0658 1.2824 0.5651 5 6 1.6675 2.2684 -0.7270 6 7 2.0432 3.4891 -0.4175 7 14 0.4839 1.9868 -2.1446 8 1 -0.9113 2.1586 -1.6661 9 1 0.7616 2.9683 -3.2238 10 1 0.6607 0.6094 -2.6708 11 6 2.1389 -1.1671 -0.0005 12 8 3.3518 -1.1671 -0.0010 13 6 1.3854 -2.4723 -0.0005 14 6 2.3648 -3.6177 -0.0005 15 6 2.8124 -4.2854 -1.0756 16 7 3.6863 -5.2637 -0.6863 17 6 4.3673 -6.1926 -1.5916 18 6 3.8333 -5.2426 0.6824 19 6 4.5821 -6.0003 1.5772 20 6 4.5098 -5.7342 2.9269 21 6 3.6955 -4.7167 3.4053 22 6 2.9513 -3.9606 2.5445 23 6 3.0102 -4.2123 1.1723 24 1 -0.3634 -0.0872 1.0240 25 1 -0.3634 0.9304 -0.4365 26 1 -0.3633 -0.8432 -0.5874 27 1 1.7057 4.2437 -0.9249 28 1 0.7584 -2.5298 -0.8902 29 1 0.7591 -2.5302 0.8897 30 1 2.5222 -4.0835 -2.0961 31 1 5.3176 -5.7617 -1.9069 32 1 4.5493 -7.1352 -1.0756 33 1 3.7419 -6.3721 -2.4661 34 1 5.2187 -6.7940 1.2148 35 1 5.0923 -6.3233 3.6198 36 1 3.6499 -4.5214 4.4665 37 1 2.3203 -3.1704 2.9239 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000523455225.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:42 Heat of formation + Delta-G solvation = 22.674166 kcal Electronic energy + Delta-G solvation = -20447.397325 eV Core-core repulsion = 17383.103828 eV Total energy + Delta-G solvation = -3064.293497 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.21946 -40.31827 -37.89485 -36.67415 -34.59808 -34.03739 -31.19793 -31.03891 -29.37297 -28.07041 -27.00091 -25.55331 -23.51491 -22.34219 -21.26743 -19.93328 -19.00499 -17.91256 -17.54839 -17.42371 -17.14552 -16.33480 -16.14873 -16.07628 -15.36636 -14.85125 -14.75859 -14.61028 -14.25897 -14.07456 -13.73118 -13.63257 -13.58211 -13.34853 -13.01049 -12.86483 -12.61065 -12.22126 -12.19902 -12.08726 -11.79581 -11.63570 -11.02441 -10.54391 -10.21317 -9.65193 -9.03003 -8.49293 -8.40863 -6.11373 0.26106 0.75792 1.22203 1.34850 1.48004 1.72138 2.01352 2.04776 2.20786 2.84699 2.98507 3.11858 3.81080 3.88898 3.97035 4.14614 4.18559 4.31555 4.36018 4.44245 4.47161 4.48356 4.63707 4.64728 4.70677 4.74665 4.86000 4.90010 4.95689 5.04046 5.29961 5.56661 5.60968 5.75187 5.88413 5.92274 6.05779 6.34126 6.51078 6.62935 6.99772 7.35614 7.97278 8.69061 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.027115 B = 0.004945 C = 0.004556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.396926 B = 5661.315347 C = 6144.735731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 N -0.490 5.490 3 C -0.335 4.335 4 H 0.035 0.965 5 C 0.006 3.994 6 N -0.917 5.917 7 Si 0.960 3.040 8 H -0.238 1.238 9 H -0.292 1.292 10 H -0.254 1.254 11 C 0.460 3.540 12 O -0.612 6.612 13 C -0.048 4.048 14 C -0.176 4.176 15 C 0.057 3.943 16 N -0.491 5.491 17 C 0.075 3.925 18 C 0.075 3.925 19 C -0.134 4.134 20 C -0.106 4.106 21 C -0.155 4.155 22 C -0.095 4.095 23 C -0.124 4.124 24 H 0.072 0.928 25 H 0.055 0.945 26 H 0.100 0.900 27 H 0.279 0.721 28 H 0.122 0.878 29 H 0.106 0.894 30 H 0.191 0.809 31 H 0.068 0.932 32 H 0.096 0.904 33 H 0.105 0.895 34 H 0.144 0.856 35 H 0.156 0.844 36 H 0.139 0.861 37 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.653 -22.351 -1.283 22.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 N -0.213 5.213 3 C -0.463 4.463 4 H 0.053 0.947 5 C -0.195 4.195 6 N -0.555 5.555 7 Si 0.783 3.217 8 H -0.163 1.163 9 H -0.220 1.220 10 H -0.177 1.177 11 C 0.251 3.749 12 O -0.496 6.496 13 C -0.088 4.088 14 C -0.183 4.183 15 C -0.068 4.068 16 N -0.174 5.174 17 C -0.065 4.065 18 C -0.031 4.031 19 C -0.154 4.154 20 C -0.125 4.125 21 C -0.174 4.174 22 C -0.114 4.114 23 C -0.128 4.128 24 H 0.090 0.910 25 H 0.073 0.927 26 H 0.119 0.881 27 H 0.089 0.911 28 H 0.139 0.861 29 H 0.124 0.876 30 H 0.208 0.792 31 H 0.087 0.913 32 H 0.115 0.885 33 H 0.123 0.877 34 H 0.162 0.838 35 H 0.173 0.827 36 H 0.157 0.843 37 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -2.910 -22.371 -1.562 22.614 hybrid contribution 0.063 1.047 -0.360 1.109 sum -2.847 -21.324 -1.921 21.599 Atomic orbital electron populations 1.22249 0.80091 1.02836 1.03288 1.43861 1.06047 1.04495 1.66924 1.18630 1.09172 0.88358 1.30174 0.94710 1.26256 1.00097 0.93711 0.99466 1.69891 1.46448 0.99315 1.39891 0.85681 0.79116 0.78991 0.77958 1.16262 1.21950 1.17728 1.21422 0.88050 0.86111 0.79336 1.90527 1.16822 1.87954 1.54252 1.19925 0.96211 0.87084 1.05587 1.19909 1.05547 1.00609 0.92239 1.21911 0.94075 0.91274 0.99566 1.43952 1.38771 1.30119 1.04514 1.22194 0.97974 0.92445 0.93908 1.18582 1.00923 0.99423 0.84187 1.20333 1.01435 1.01349 0.92331 1.21151 0.98852 0.97853 0.94652 1.20896 0.98829 0.97490 1.00182 1.20449 1.00043 0.99186 0.91682 1.19405 1.00953 0.98589 0.93894 0.90975 0.92687 0.88133 0.91122 0.86053 0.87628 0.79197 0.91330 0.88530 0.87653 0.83790 0.82685 0.84300 0.87364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 2.11 8.78 127.77 1.12 3.23 16 2 N -0.49 -24.51 2.59 -658.90 -1.70 -26.22 16 3 C -0.34 -20.58 9.37 84.04 0.79 -19.79 16 4 H 0.03 2.53 7.90 -2.91 -0.02 2.51 16 5 C 0.01 0.34 5.29 84.93 0.45 0.79 16 6 N -0.92 -56.33 13.96 21.66 0.30 -56.03 16 7 Si 0.96 42.31 24.96 68.60 1.71 44.02 16 8 H -0.24 -9.03 6.69 99.48 0.67 -8.36 16 9 H -0.29 -12.93 7.11 99.48 0.71 -12.23 16 10 H -0.25 -10.62 7.11 99.48 0.71 -9.92 16 11 C 0.46 22.40 7.62 87.66 0.67 23.07 16 12 O -0.61 -36.46 15.90 -3.08 -0.05 -36.51 16 13 C -0.05 -1.64 4.85 29.11 0.14 -1.50 16 14 C -0.18 -6.22 4.81 -18.63 -0.09 -6.31 16 15 C 0.06 1.70 11.20 83.00 0.93 2.63 16 16 N -0.49 -13.21 3.18 -539.28 -1.71 -14.93 16 17 C 0.07 1.18 11.03 127.77 1.41 2.59 16 18 C 0.08 2.33 6.81 39.03 0.27 2.60 16 19 C -0.13 -3.37 9.97 22.37 0.22 -3.15 16 20 C -0.11 -2.53 10.01 22.30 0.22 -2.31 16 21 C -0.15 -4.30 9.97 22.03 0.22 -4.08 16 22 C -0.09 -3.25 10.05 22.23 0.22 -3.03 16 23 C -0.12 -4.49 6.35 -20.20 -0.13 -4.61 16 24 H 0.07 2.34 8.14 -2.38 -0.02 2.32 16 25 H 0.05 2.12 3.42 -2.38 -0.01 2.12 16 26 H 0.10 2.76 6.64 -2.39 -0.02 2.74 16 27 H 0.28 15.62 8.31 -92.71 -0.77 14.85 16 28 H 0.12 3.24 7.41 -2.39 -0.02 3.22 16 29 H 0.11 3.18 8.11 -2.39 -0.02 3.16 16 30 H 0.19 4.34 8.06 -2.91 -0.02 4.32 16 31 H 0.07 1.07 8.14 -2.38 -0.02 1.05 16 32 H 0.10 1.13 8.11 -2.39 -0.02 1.11 16 33 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.14 2.60 8.06 -2.91 -0.02 2.58 16 35 H 0.16 2.51 8.06 -2.91 -0.02 2.49 16 36 H 0.14 3.10 8.06 -2.91 -0.02 3.07 16 37 H 0.11 3.71 8.06 -2.91 -0.02 3.69 16 Total: -1.00 -85.75 312.22 6.02 -79.73 By element: Atomic # 1 Polarization: 18.78 SS G_CDS: 1.03 Total: 19.81 kcal Atomic # 6 Polarization: -16.32 SS G_CDS: 6.44 Total: -9.88 kcal Atomic # 7 Polarization: -94.05 SS G_CDS: -3.12 Total: -97.17 kcal Atomic # 8 Polarization: -36.46 SS G_CDS: -0.05 Total: -36.51 kcal Atomic # 14 Polarization: 42.31 SS G_CDS: 1.71 Total: 44.02 kcal Total: -85.75 6.02 -79.73 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000523455225.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.404 kcal (2) G-P(sol) polarization free energy of solvation -85.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.730 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds