Wall clock time and date at job start Mon Mar 30 2020 01:51:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36543 * 125.07558 * 2 1 4 4 C 1.34548 * 109.90062 * 179.97438 * 3 2 1 5 5 C 1.45997 * 107.00527 * 359.97438 * 4 3 2 6 6 C 1.37798 * 125.07110 * 179.97438 * 2 1 3 7 7 C 1.38974 * 133.37472 * 359.97438 * 6 2 1 8 8 C 1.38065 * 120.27098 * 180.02562 * 7 6 2 9 9 C 1.38269 * 120.88272 * 359.97438 * 8 7 6 10 10 C 1.39321 * 120.19961 * 0.02562 * 9 8 7 11 11 C 1.47376 * 120.34195 * 180.02562 * 10 9 8 12 12 O 1.21617 * 119.99943 * 180.02562 * 11 10 9 13 13 N 1.34773 * 120.00291 * 359.97438 * 11 10 9 14 14 C 1.46498 * 120.00228 * 179.97438 * 13 11 10 15 15 C 1.52999 * 109.47176 * 179.97438 * 14 13 11 16 16 C 1.50700 * 109.47230 * 180.02562 * 15 14 13 17 17 H 1.08002 * 119.99601 * 0.02562 * 16 15 14 18 18 C 1.37872 * 120.00197 * 180.02562 * 16 15 14 19 19 N 1.31516 * 120.00241 * 180.02562 * 18 16 15 20 20 Si 1.86800 * 120.00223 * 0.02562 * 18 16 15 21 21 H 1.48497 * 109.47387 * 89.99400 * 20 18 16 22 22 H 1.48501 * 109.47275 * 210.00239 * 20 18 16 23 23 H 1.48503 * 109.46860 * 329.99885 * 20 18 16 24 24 H 1.08996 * 109.46559 * 89.98207 * 1 2 3 25 25 H 1.09000 * 109.47003 * 209.97689 * 1 2 3 26 26 H 1.08998 * 109.46937 * 329.98164 * 1 2 3 27 27 H 1.07995 * 125.05262 * 359.97438 * 3 2 1 28 28 H 1.07997 * 126.49719 * 179.97438 * 4 3 2 29 29 H 1.08002 * 119.86564 * 0.34347 * 7 6 2 30 30 H 1.08001 * 119.55870 * 179.97438 * 8 7 6 31 31 H 1.08002 * 119.89989 * 180.02562 * 9 8 7 32 32 H 0.97002 * 119.99904 * 359.97438 * 13 11 10 33 33 H 1.08999 * 109.47095 * 300.00323 * 14 13 11 34 34 H 1.09011 * 109.46997 * 60.00080 * 14 13 11 35 35 H 1.08999 * 109.47547 * 300.00260 * 15 14 13 36 36 H 1.09005 * 109.46915 * 60.00717 * 15 14 13 37 37 H 0.97002 * 120.00048 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2497 1.1175 0.0000 4 6 3.5482 0.7653 0.0006 5 6 3.5949 -0.6940 0.0016 6 6 2.2568 -1.1278 0.0005 7 6 1.9784 -2.4894 0.0016 8 6 3.0073 -3.4101 0.0024 9 6 4.3275 -2.9991 0.0016 10 6 4.6387 -1.6411 0.0005 11 6 6.0447 -1.1995 -0.0008 12 8 6.3093 -0.0125 -0.0013 13 7 7.0374 -2.1111 -0.0006 14 6 8.4351 -1.6722 -0.0025 15 6 9.3539 -2.8956 -0.0011 16 6 10.7916 -2.4440 -0.0024 17 1 11.0265 -1.3899 -0.0037 18 6 11.8071 -3.3766 -0.0020 19 7 13.0618 -2.9826 -0.0027 20 14 11.4008 -5.1999 -0.0005 21 1 11.2926 -5.6841 -1.4002 22 1 12.4768 -5.9463 0.6998 23 1 10.1099 -5.4188 0.7001 24 1 -0.3632 0.0003 -1.0277 25 1 -0.3633 -0.8902 0.5135 26 1 -0.3633 0.8898 0.5141 27 1 1.8826 2.1331 -0.0004 28 1 4.3954 1.4350 0.0003 29 1 0.9531 -2.8287 -0.0034 30 1 2.7778 -4.4654 0.0036 31 1 5.1198 -3.7330 0.0018 32 1 6.8264 -3.0579 0.0009 33 1 8.6269 -1.0742 -0.8934 34 1 8.6286 -1.0718 0.8866 35 1 9.1619 -3.4931 0.8901 36 1 9.1605 -3.4962 -0.8900 37 1 13.7763 -3.6387 -0.0028 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000541453053.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:02 Heat of formation + Delta-G solvation = 23.599795 kcal Electronic energy + Delta-G solvation = -19619.043058 eV Core-core repulsion = 16554.789700 eV Total energy + Delta-G solvation = -3064.253359 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.45948 -39.16834 -36.85640 -34.93761 -32.95898 -32.78833 -31.08115 -29.62682 -29.08851 -26.42356 -25.16339 -23.29354 -21.71022 -21.24438 -20.64823 -19.61831 -17.39039 -16.96766 -16.66241 -16.15442 -15.59331 -15.23658 -15.10060 -14.85184 -14.18082 -13.93110 -13.59553 -13.40232 -13.08231 -12.86112 -12.82426 -12.56272 -12.51219 -11.80756 -11.47604 -11.44532 -11.40300 -11.15506 -10.35208 -10.21066 -9.92675 -9.68646 -9.43369 -9.24086 -8.60387 -8.46735 -8.33379 -7.71358 -6.07764 -4.07595 0.65923 1.44658 2.61004 2.63976 3.13912 3.28171 3.35631 3.37130 3.66551 4.04548 4.40950 4.43708 4.54534 4.69737 4.80125 4.85039 4.94691 5.05683 5.16815 5.25269 5.35571 5.48069 5.66356 5.82436 6.04163 6.18578 6.26939 6.29919 6.32676 6.58622 6.61759 6.69627 6.82903 7.04905 7.13957 7.19870 7.28139 7.70505 7.99687 8.47626 8.66464 8.96952 9.52507 11.05339 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.037661 B = 0.003510 C = 0.003220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.297938 B = 7975.514374 C = 8693.063403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.492 5.492 3 C 0.042 3.958 4 C -0.180 4.180 5 C -0.060 4.060 6 C 0.086 3.914 7 C -0.110 4.110 8 C -0.108 4.108 9 C -0.112 4.112 10 C -0.081 4.081 11 C 0.550 3.450 12 O -0.538 6.538 13 N -0.722 5.722 14 C 0.131 3.869 15 C -0.023 4.023 16 C -0.522 4.522 17 H 0.076 0.924 18 C 0.069 3.931 19 N -0.899 5.899 20 Si 0.882 3.118 21 H -0.276 1.276 22 H -0.287 1.287 23 H -0.266 1.266 24 H 0.067 0.933 25 H 0.078 0.922 26 H 0.082 0.918 27 H 0.169 0.831 28 H 0.159 0.841 29 H 0.119 0.881 30 H 0.130 0.870 31 H 0.129 0.871 32 H 0.395 0.605 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.022 0.978 36 H 0.018 0.982 37 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.316 1.228 0.092 28.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.177 5.177 3 C -0.082 4.082 4 C -0.204 4.204 5 C -0.065 4.065 6 C -0.020 4.020 7 C -0.130 4.130 8 C -0.127 4.127 9 C -0.132 4.132 10 C -0.084 4.084 11 C 0.336 3.664 12 O -0.417 6.417 13 N -0.372 5.372 14 C 0.009 3.991 15 C -0.060 4.060 16 C -0.560 4.560 17 H 0.094 0.906 18 C -0.133 4.133 19 N -0.538 5.538 20 Si 0.709 3.291 21 H -0.202 1.202 22 H -0.213 1.213 23 H -0.190 1.190 24 H 0.086 0.914 25 H 0.097 0.903 26 H 0.100 0.900 27 H 0.187 0.813 28 H 0.176 0.824 29 H 0.137 0.863 30 H 0.148 0.852 31 H 0.147 0.853 32 H 0.229 0.771 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.040 0.960 36 H 0.036 0.964 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -28.245 2.069 0.095 28.321 hybrid contribution -0.229 -1.476 -0.028 1.494 sum -28.475 0.592 0.067 28.481 Atomic orbital electron populations 1.21897 0.77307 1.04040 1.02821 1.43731 1.05714 1.04282 1.63924 1.21932 0.90502 0.91017 1.04799 1.21982 0.95952 0.93146 1.09334 1.18990 0.90729 0.93697 1.03122 1.18168 0.89994 0.88386 1.05438 1.20089 0.99521 0.89111 1.04326 1.20690 0.91773 0.99095 1.01152 1.21162 0.96977 0.94271 1.00786 1.19527 0.92501 0.92743 1.03650 1.18127 0.84832 0.86155 0.77239 1.90730 1.84530 1.16476 1.49956 1.46265 1.07533 1.09382 1.74058 1.21517 0.77065 0.98861 1.01707 1.19804 0.95805 0.93600 0.96837 1.20927 0.87945 0.95626 1.51495 0.90592 1.25001 0.94869 0.99042 0.94407 1.69907 0.98901 1.34408 1.50557 0.86752 0.78371 0.85468 0.78500 1.20223 1.21307 1.19026 0.91435 0.90295 0.89958 0.81347 0.82372 0.86264 0.85176 0.85334 0.77087 0.91853 0.91833 0.95971 0.96411 0.92582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.44 11.02 59.85 0.66 1.10 16 2 N -0.49 -4.95 3.17 -121.82 -0.39 -5.34 16 3 C 0.04 0.44 11.29 -16.76 -0.19 0.25 16 4 C -0.18 -2.54 10.24 -37.78 -0.39 -2.92 16 5 C -0.06 -0.90 6.15 -104.85 -0.64 -1.55 16 6 C 0.09 1.06 6.80 -83.99 -0.57 0.49 16 7 C -0.11 -1.12 9.93 -39.37 -0.39 -1.51 16 8 C -0.11 -1.10 9.99 -39.63 -0.40 -1.50 16 9 C -0.11 -1.38 9.53 -39.17 -0.37 -1.75 16 10 C -0.08 -1.25 5.90 -104.75 -0.62 -1.87 16 11 C 0.55 10.13 7.76 -12.54 -0.10 10.03 16 12 O -0.54 -11.55 15.09 5.26 0.08 -11.47 16 13 N -0.72 -12.84 5.51 -61.40 -0.34 -13.18 16 14 C 0.13 2.77 5.61 -4.04 -0.02 2.75 16 15 C -0.02 -0.53 4.16 -27.88 -0.12 -0.65 16 16 C -0.52 -14.81 9.66 -34.44 -0.33 -15.14 16 17 H 0.08 2.34 7.99 -52.49 -0.42 1.92 16 18 C 0.07 1.98 5.47 -17.82 -0.10 1.89 16 19 N -0.90 -27.63 13.96 55.43 0.77 -26.86 16 20 Si 0.88 21.23 27.47 -169.99 -4.67 16.57 16 21 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 22 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 23 H -0.27 -6.03 6.54 56.52 0.37 -5.66 16 24 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 25 H 0.08 0.34 8.09 -51.93 -0.42 -0.08 16 26 H 0.08 0.29 8.13 -51.93 -0.42 -0.13 16 27 H 0.17 1.13 8.06 -52.49 -0.42 0.71 16 28 H 0.16 2.40 7.16 -52.49 -0.38 2.02 16 29 H 0.12 0.87 8.06 -52.49 -0.42 0.44 16 30 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 31 H 0.13 1.34 6.40 -52.49 -0.34 1.01 16 32 H 0.39 5.89 6.51 -40.82 -0.27 5.62 16 33 H 0.06 1.41 8.14 -51.93 -0.42 0.98 16 34 H 0.06 1.41 8.14 -51.92 -0.42 0.99 16 35 H 0.02 0.51 7.20 -51.93 -0.37 0.13 16 36 H 0.02 0.40 7.57 -51.93 -0.39 0.01 16 37 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 315.42 15.07 4.75 4.75 Total: -1.00 -34.88 315.42 -8.07 -42.95 By element: Atomic # 1 Polarization: 7.68 SS G_CDS: -4.71 Total: 2.97 kcal Atomic # 6 Polarization: -6.82 SS G_CDS: -3.58 Total: -10.40 kcal Atomic # 7 Polarization: -45.43 SS G_CDS: 0.05 Total: -45.38 kcal Atomic # 8 Polarization: -11.55 SS G_CDS: 0.08 Total: -11.47 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -4.67 Total: 16.57 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -34.88 -8.07 -42.95 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000541453053.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.555 kcal (2) G-P(sol) polarization free energy of solvation -34.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.955 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds