Wall clock time and date at job start Mon Mar 30 2020 01:51:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36543 * 125.07558 * 2 1 4 4 C 1.34548 * 109.90062 * 179.97438 * 3 2 1 5 5 C 1.45997 * 107.00527 * 359.97438 * 4 3 2 6 6 C 1.37798 * 125.07110 * 179.97438 * 2 1 3 7 7 C 1.38974 * 133.37472 * 359.97438 * 6 2 1 8 8 C 1.38065 * 120.27098 * 180.02562 * 7 6 2 9 9 C 1.38269 * 120.88272 * 359.97438 * 8 7 6 10 10 C 1.39321 * 120.19961 * 0.02562 * 9 8 7 11 11 C 1.47376 * 120.34195 * 180.02562 * 10 9 8 12 12 O 1.21617 * 119.99943 * 180.02562 * 11 10 9 13 13 N 1.34773 * 120.00291 * 359.97438 * 11 10 9 14 14 C 1.46498 * 120.00228 * 179.97438 * 13 11 10 15 15 C 1.52999 * 109.47176 * 179.97438 * 14 13 11 16 16 C 1.50700 * 109.47230 * 180.02562 * 15 14 13 17 17 H 1.08002 * 119.99601 * 0.02562 * 16 15 14 18 18 C 1.37872 * 120.00197 * 180.02562 * 16 15 14 19 19 N 1.31516 * 120.00241 * 180.02562 * 18 16 15 20 20 Si 1.86800 * 120.00223 * 0.02562 * 18 16 15 21 21 H 1.48497 * 109.47387 * 89.99400 * 20 18 16 22 22 H 1.48501 * 109.47275 * 210.00239 * 20 18 16 23 23 H 1.48503 * 109.46860 * 329.99885 * 20 18 16 24 24 H 1.08996 * 109.46559 * 89.98207 * 1 2 3 25 25 H 1.09000 * 109.47003 * 209.97689 * 1 2 3 26 26 H 1.08998 * 109.46937 * 329.98164 * 1 2 3 27 27 H 1.07995 * 125.05262 * 359.97438 * 3 2 1 28 28 H 1.07997 * 126.49719 * 179.97438 * 4 3 2 29 29 H 1.08002 * 119.86564 * 0.34347 * 7 6 2 30 30 H 1.08001 * 119.55870 * 179.97438 * 8 7 6 31 31 H 1.08002 * 119.89989 * 180.02562 * 9 8 7 32 32 H 0.97002 * 119.99904 * 359.97438 * 13 11 10 33 33 H 1.08999 * 109.47095 * 300.00323 * 14 13 11 34 34 H 1.09011 * 109.46997 * 60.00080 * 14 13 11 35 35 H 1.08999 * 109.47547 * 300.00260 * 15 14 13 36 36 H 1.09005 * 109.46915 * 60.00717 * 15 14 13 37 37 H 0.97002 * 120.00048 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2497 1.1175 0.0000 4 6 3.5482 0.7653 0.0006 5 6 3.5949 -0.6940 0.0016 6 6 2.2568 -1.1278 0.0005 7 6 1.9784 -2.4894 0.0016 8 6 3.0073 -3.4101 0.0024 9 6 4.3275 -2.9991 0.0016 10 6 4.6387 -1.6411 0.0005 11 6 6.0447 -1.1995 -0.0008 12 8 6.3093 -0.0125 -0.0013 13 7 7.0374 -2.1111 -0.0006 14 6 8.4351 -1.6722 -0.0025 15 6 9.3539 -2.8956 -0.0011 16 6 10.7916 -2.4440 -0.0024 17 1 11.0265 -1.3899 -0.0037 18 6 11.8071 -3.3766 -0.0020 19 7 13.0618 -2.9826 -0.0027 20 14 11.4008 -5.1999 -0.0005 21 1 11.2926 -5.6841 -1.4002 22 1 12.4768 -5.9463 0.6998 23 1 10.1099 -5.4188 0.7001 24 1 -0.3632 0.0003 -1.0277 25 1 -0.3633 -0.8902 0.5135 26 1 -0.3633 0.8898 0.5141 27 1 1.8826 2.1331 -0.0004 28 1 4.3954 1.4350 0.0003 29 1 0.9531 -2.8287 -0.0034 30 1 2.7778 -4.4654 0.0036 31 1 5.1198 -3.7330 0.0018 32 1 6.8264 -3.0579 0.0009 33 1 8.6269 -1.0742 -0.8934 34 1 8.6286 -1.0718 0.8866 35 1 9.1619 -3.4931 0.8901 36 1 9.1605 -3.4962 -0.8900 37 1 13.7763 -3.6387 -0.0028 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000541453053.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:02 Heat of formation + Delta-G solvation = -0.000882 kcal Electronic energy + Delta-G solvation = -19620.066460 eV Core-core repulsion = 16554.789700 eV Total energy + Delta-G solvation = -3065.276761 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.32594 -40.54909 -37.78111 -36.65719 -34.81072 -33.74660 -32.51222 -31.02982 -29.97175 -27.16419 -26.85991 -24.49025 -22.87762 -22.43274 -22.12525 -20.81110 -18.99238 -18.41504 -17.73491 -17.09634 -16.55835 -16.54492 -16.26734 -16.16083 -15.98552 -15.04293 -14.95029 -14.74601 -14.52358 -14.01430 -13.65349 -13.62869 -13.36481 -13.10327 -13.03745 -12.61500 -12.43812 -12.21265 -12.17663 -12.13692 -11.75309 -11.51855 -10.83013 -10.78522 -10.62374 -10.07354 -9.19239 -8.59625 -8.29798 -6.37442 -0.31383 0.58759 1.39750 1.42844 1.54295 1.67928 1.90999 1.97292 2.25630 2.37798 2.98812 3.05059 3.66337 3.90998 3.94072 3.98207 4.17193 4.26083 4.37204 4.41022 4.50004 4.55242 4.66882 4.73292 4.76454 4.85442 4.96686 5.11521 5.13840 5.39061 5.40376 5.43396 5.46133 5.63969 5.73729 5.74194 6.18626 6.22209 6.41499 6.60937 6.71104 7.25852 7.27793 8.87133 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.037661 B = 0.003510 C = 0.003220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.297938 B = 7975.514374 C = 8693.063403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.487 5.487 3 C 0.073 3.927 4 C -0.240 4.240 5 C -0.092 4.092 6 C 0.069 3.931 7 C -0.090 4.090 8 C -0.111 4.111 9 C -0.102 4.102 10 C -0.123 4.123 11 C 0.546 3.454 12 O -0.583 6.583 13 N -0.712 5.712 14 C 0.146 3.854 15 C -0.011 4.011 16 C -0.541 4.541 17 H 0.027 0.973 18 C 0.003 3.997 19 N -0.951 5.951 20 Si 0.960 3.040 21 H -0.264 1.264 22 H -0.286 1.286 23 H -0.236 1.236 24 H 0.081 0.919 25 H 0.095 0.905 26 H 0.104 0.896 27 H 0.208 0.792 28 H 0.129 0.871 29 H 0.159 0.841 30 H 0.170 0.830 31 H 0.145 0.855 32 H 0.411 0.589 33 H 0.043 0.957 34 H 0.043 0.957 35 H 0.038 0.962 36 H 0.037 0.963 37 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.866 -1.929 0.126 32.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.170 5.170 3 C -0.053 4.053 4 C -0.265 4.265 5 C -0.098 4.098 6 C -0.037 4.037 7 C -0.111 4.111 8 C -0.130 4.130 9 C -0.122 4.122 10 C -0.127 4.127 11 C 0.336 3.664 12 O -0.465 6.465 13 N -0.364 5.364 14 C 0.022 3.978 15 C -0.049 4.049 16 C -0.579 4.579 17 H 0.046 0.954 18 C -0.194 4.194 19 N -0.591 5.591 20 Si 0.782 3.218 21 H -0.189 1.189 22 H -0.211 1.211 23 H -0.159 1.159 24 H 0.100 0.900 25 H 0.113 0.887 26 H 0.123 0.877 27 H 0.224 0.776 28 H 0.146 0.854 29 H 0.177 0.823 30 H 0.187 0.813 31 H 0.163 0.837 32 H 0.249 0.751 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.057 0.943 36 H 0.055 0.945 37 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -32.858 -1.115 0.129 32.877 hybrid contribution 1.082 -0.357 -0.043 1.140 sum -31.776 -1.472 0.087 31.810 Atomic orbital electron populations 1.22287 0.74058 1.06054 1.04370 1.44082 1.07500 1.03272 1.62114 1.22384 0.89335 0.92759 1.00839 1.21900 0.97084 0.93261 1.14218 1.19344 0.92393 0.94111 1.03955 1.18450 0.89124 0.89943 1.06212 1.20610 1.01563 0.87934 1.00951 1.21140 0.90523 1.01104 1.00211 1.21461 0.98912 0.92926 0.98882 1.19371 0.90286 0.94601 1.08445 1.18761 0.86322 0.85510 0.75822 1.90697 1.85388 1.18410 1.51995 1.45979 1.05839 1.10351 1.74237 1.21051 0.79072 0.97800 0.99891 1.19650 0.92787 0.94315 0.98168 1.21245 0.91177 0.93766 1.51702 0.95422 1.26104 0.94322 1.05359 0.93568 1.70080 1.00428 1.36669 1.51938 0.85518 0.79380 0.77453 0.79420 1.18867 1.21141 1.15851 0.90022 0.88670 0.87745 0.77565 0.85356 0.82335 0.81275 0.83690 0.75088 0.93857 0.93867 0.94342 0.94480 0.92283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.45 11.02 127.77 1.41 1.86 16 2 N -0.49 -8.42 3.17 -539.32 -1.71 -10.13 16 3 C 0.07 1.46 11.29 83.11 0.94 2.39 16 4 C -0.24 -7.21 10.24 23.44 0.24 -6.97 16 5 C -0.09 -2.84 6.15 -20.01 -0.12 -2.96 16 6 C 0.07 1.55 6.80 38.97 0.27 1.81 16 7 C -0.09 -1.46 9.93 22.41 0.22 -1.24 16 8 C -0.11 -1.80 9.99 22.24 0.22 -1.58 16 9 C -0.10 -2.30 9.53 22.54 0.21 -2.09 16 10 C -0.12 -3.89 5.90 -19.95 -0.12 -4.01 16 11 C 0.55 21.22 7.76 86.65 0.67 21.89 16 12 O -0.58 -27.31 15.09 -4.09 -0.06 -27.38 16 13 N -0.71 -25.78 5.51 -466.41 -2.57 -28.35 16 14 C 0.15 6.45 5.61 86.38 0.48 6.93 16 15 C -0.01 -0.53 4.16 29.85 0.12 -0.41 16 16 C -0.54 -31.81 9.66 25.60 0.25 -31.56 16 17 H 0.03 1.82 7.99 -2.91 -0.02 1.80 16 18 C 0.00 0.20 5.47 84.65 0.46 0.67 16 19 N -0.95 -60.35 13.96 21.45 0.30 -60.05 16 20 Si 0.96 42.96 27.47 68.60 1.88 44.84 16 21 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 22 H -0.29 -12.65 7.11 99.48 0.71 -11.94 16 23 H -0.24 -9.35 6.54 99.48 0.65 -8.69 16 24 H 0.08 0.35 8.14 -2.39 -0.02 0.33 16 25 H 0.09 0.33 8.09 -2.39 -0.02 0.32 16 26 H 0.10 0.24 8.13 -2.39 -0.02 0.22 16 27 H 0.21 2.26 8.06 -2.91 -0.02 2.23 16 28 H 0.13 4.46 7.16 -2.91 -0.02 4.44 16 29 H 0.16 1.30 8.06 -2.91 -0.02 1.28 16 30 H 0.17 1.43 8.06 -2.91 -0.02 1.41 16 31 H 0.15 2.61 6.40 -2.91 -0.02 2.60 16 32 H 0.41 11.76 6.51 -92.71 -0.60 11.16 16 33 H 0.04 2.06 8.14 -2.39 -0.02 2.04 16 34 H 0.04 2.06 8.14 -2.38 -0.02 2.04 16 35 H 0.04 1.67 7.20 -2.39 -0.02 1.66 16 36 H 0.04 1.59 7.57 -2.38 -0.02 1.57 16 37 H 0.27 15.75 8.31 -92.71 -0.77 14.98 16 Total: -1.00 -82.94 315.42 3.53 -79.41 By element: Atomic # 1 Polarization: 16.48 SS G_CDS: 0.43 Total: 16.91 kcal Atomic # 6 Polarization: -20.51 SS G_CDS: 5.26 Total: -15.25 kcal Atomic # 7 Polarization: -94.54 SS G_CDS: -3.98 Total: -98.52 kcal Atomic # 8 Polarization: -27.31 SS G_CDS: -0.06 Total: -27.38 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 1.88 Total: 44.84 kcal Total: -82.94 3.53 -79.41 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000541453053.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.405 kcal (2) G-P(sol) polarization free energy of solvation -82.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds