Wall clock time and date at job start Mon Mar 30 2020 01:49:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.37865 * 119.52390 * 2 1 4 4 C 1.39113 * 120.97229 * 0.02562 * 3 2 1 5 5 C 1.37802 * 119.75044 * 179.97438 * 4 3 2 6 6 C 1.38847 * 120.68723 * 0.02562 * 5 4 3 7 7 C 1.36597 * 120.58711 * 359.97438 * 6 5 4 8 8 C 1.39881 * 119.72130 * 359.97438 * 7 6 5 9 9 C 1.46410 * 121.15132 * 180.02562 * 8 7 6 10 10 C 1.35600 * 118.52932 * 180.02562 * 9 8 7 11 11 C 1.50707 * 119.87551 * 180.02562 * 10 9 8 12 12 N 1.46901 * 109.46864 * 94.99786 * 11 10 9 13 13 C 1.46906 * 110.99419 * 179.97438 * 12 11 10 14 14 C 1.50698 * 109.46557 * 179.97438 * 13 12 11 15 15 H 1.07994 * 120.00379 * 0.02562 * 14 13 12 16 16 C 1.37884 * 119.99707 * 179.97438 * 14 13 12 17 17 N 1.31515 * 120.00111 * 180.02562 * 16 14 13 18 18 Si 1.86795 * 119.99914 * 0.02562 * 16 14 13 19 19 H 1.48498 * 109.47436 * 89.99463 * 18 16 14 20 20 H 1.48503 * 109.46963 * 209.99859 * 18 16 14 21 21 H 1.48503 * 109.47319 * 329.99132 * 18 16 14 22 22 C 1.34460 * 119.52241 * 179.73538 * 2 1 3 23 23 O 1.21877 * 119.17609 * 359.97051 * 22 2 1 24 24 H 1.09002 * 109.47391 * 89.99722 * 1 2 3 25 25 H 1.09001 * 109.46813 * 329.99778 * 1 2 3 26 26 H 1.09004 * 109.47041 * 209.99905 * 1 2 3 27 27 H 1.08003 * 120.12288 * 359.95650 * 4 3 2 28 28 H 1.07993 * 119.66044 * 180.02562 * 5 4 3 29 29 H 1.07997 * 119.70329 * 179.97438 * 6 5 4 30 30 H 1.08005 * 120.13774 * 180.02562 * 7 6 5 31 31 H 1.07990 * 120.73112 * 359.97438 * 9 8 7 32 32 H 1.08989 * 109.46924 * 215.00099 * 11 10 9 33 33 H 1.09004 * 109.46964 * 334.99921 * 11 10 9 34 34 H 1.00893 * 110.99720 * 56.04663 * 12 11 10 35 35 H 1.08995 * 109.47485 * 300.00032 * 13 12 11 36 36 H 1.09006 * 109.46829 * 60.00395 * 13 12 11 37 37 H 0.96997 * 119.99910 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1444 1.1996 0.0000 4 6 1.4593 2.4104 0.0005 5 6 2.1637 3.5947 0.0011 6 6 3.5522 3.5933 0.0005 7 6 4.2461 2.4167 0.0000 8 6 3.5520 1.2022 0.0005 9 6 4.2640 -0.0771 0.0006 10 6 3.5380 -1.2223 0.0006 11 6 4.2397 -2.5561 0.0012 12 7 4.3604 -3.0452 1.3811 13 6 5.0407 -4.3467 1.4206 14 6 5.1463 -4.8149 2.8490 15 1 4.7476 -4.2069 3.6476 16 6 5.7510 -6.0203 3.1364 17 7 5.8428 -6.4293 4.3830 18 14 6.4399 -7.0723 1.7552 19 1 7.8572 -6.7025 1.5109 20 1 6.3610 -8.5051 2.1377 21 1 5.6491 -6.8459 0.5188 22 6 2.1276 -1.1700 0.0054 23 8 1.4944 -2.2114 0.0108 24 1 -0.3634 0.0000 -1.0277 25 1 -0.3633 0.8900 0.5139 26 1 -0.3633 -0.8900 0.5138 27 1 0.3793 2.4220 0.0002 28 1 1.6304 4.5338 0.0019 29 1 4.0883 4.5308 0.0005 30 1 5.3261 2.4240 0.0000 31 1 5.3435 -0.1078 -0.0003 32 1 3.6642 -3.2696 -0.5883 33 1 5.2334 -2.4440 -0.4328 34 1 3.4568 -3.0961 1.8269 35 1 4.4703 -5.0725 0.8411 36 1 6.0398 -4.2474 0.9963 37 1 6.2686 -7.2771 4.5852 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000579345331.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:32 Heat of formation + Delta-G solvation = -6.769226 kcal Electronic energy + Delta-G solvation = -19990.167078 eV Core-core repulsion = 16924.596820 eV Total energy + Delta-G solvation = -3065.570258 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.50605 -39.74346 -37.71115 -36.68669 -35.64342 -34.32290 -31.75053 -30.88576 -29.39740 -28.57881 -26.20609 -24.25773 -23.52458 -23.02886 -22.69281 -19.73108 -19.12357 -18.32886 -18.00400 -17.16708 -16.76321 -16.33761 -15.99289 -15.80547 -15.50739 -15.44685 -15.07462 -14.56867 -14.43186 -14.24299 -13.89886 -13.84935 -13.40622 -13.27508 -13.05182 -12.70044 -12.50228 -12.26478 -12.07968 -11.87545 -11.56243 -11.50769 -11.26377 -11.15491 -10.82938 -9.49436 -9.23480 -8.94147 -8.32728 -6.37937 -0.51813 0.25160 0.84313 1.32880 1.35981 1.47533 1.62950 2.05355 2.32730 2.94361 3.00731 3.43389 3.46643 3.62378 3.70150 3.93470 4.11144 4.21494 4.29317 4.36358 4.41075 4.47147 4.58940 4.64744 4.69294 4.73605 4.85902 4.92456 5.03245 5.14101 5.19826 5.45172 5.47501 5.53463 5.57859 5.84931 5.89524 6.11412 6.41489 6.55459 6.68505 6.86047 7.26515 8.84260 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.029045 B = 0.003947 C = 0.003715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.781445 B = 7092.793487 C = 7534.452100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.060 3.940 2 N -0.524 5.524 3 C 0.158 3.842 4 C -0.171 4.171 5 C -0.058 4.058 6 C -0.150 4.150 7 C -0.054 4.054 8 C -0.152 4.152 9 C 0.020 3.980 10 C -0.214 4.214 11 C 0.117 3.883 12 N -0.677 5.677 13 C 0.174 3.826 14 C -0.532 4.532 15 H 0.033 0.967 16 C 0.008 3.992 17 N -0.947 5.947 18 Si 0.955 3.045 19 H -0.257 1.257 20 H -0.279 1.279 21 H -0.256 1.256 22 C 0.526 3.474 23 O -0.585 6.585 24 H 0.084 0.916 25 H 0.116 0.884 26 H 0.071 0.929 27 H 0.155 0.845 28 H 0.164 0.836 29 H 0.159 0.841 30 H 0.157 0.843 31 H 0.168 0.832 32 H 0.019 0.981 33 H 0.098 0.902 34 H 0.327 0.673 35 H -0.020 1.020 36 H 0.037 0.963 37 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.863 25.857 -14.312 30.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.239 5.239 3 C 0.057 3.943 4 C -0.191 4.191 5 C -0.077 4.077 6 C -0.169 4.169 7 C -0.073 4.073 8 C -0.155 4.155 9 C -0.002 4.002 10 C -0.217 4.217 11 C -0.012 4.012 12 N -0.306 5.306 13 C 0.045 3.955 14 C -0.570 4.570 15 H 0.051 0.949 16 C -0.189 4.189 17 N -0.587 5.587 18 Si 0.777 3.223 19 H -0.181 1.181 20 H -0.204 1.204 21 H -0.180 1.180 22 C 0.325 3.675 23 O -0.469 6.469 24 H 0.102 0.898 25 H 0.134 0.866 26 H 0.090 0.910 27 H 0.172 0.828 28 H 0.182 0.818 29 H 0.177 0.823 30 H 0.175 0.825 31 H 0.185 0.815 32 H 0.037 0.963 33 H 0.116 0.884 34 H 0.143 0.857 35 H -0.003 1.003 36 H 0.055 0.945 37 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -6.655 25.396 -14.079 29.791 hybrid contribution -0.612 -1.805 -0.237 1.921 sum -7.267 23.591 -14.317 28.536 Atomic orbital electron populations 1.22218 0.76133 1.05261 1.04429 1.45245 1.09486 1.04967 1.64232 1.18480 0.91601 0.86076 0.98093 1.21133 1.01467 0.89717 1.06820 1.21594 0.94551 0.98180 0.93325 1.21265 0.94614 0.99002 1.01982 1.21231 1.01435 0.89981 0.94612 1.18965 0.91039 0.94827 1.10632 1.22855 1.01330 0.89401 0.86613 1.20614 0.91941 0.97425 1.11746 1.20585 0.99158 0.91193 0.90252 1.60638 1.25209 1.29107 1.15643 1.19799 0.94339 0.86199 0.95125 1.21293 1.38376 1.04704 0.92602 0.94855 1.25910 0.95816 0.98738 0.98458 1.70054 1.45579 1.22626 1.20417 0.85603 0.79764 0.77576 0.79315 1.18105 1.20398 1.18043 1.17213 0.89486 0.83012 0.77805 1.90863 1.69910 1.32759 1.53332 0.89763 0.86570 0.91045 0.82754 0.81814 0.82321 0.82537 0.81458 0.96257 0.88411 0.85686 1.00274 0.94541 0.92196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.20 9.84 127.77 1.26 2.45 16 2 N -0.52 -14.11 3.03 -665.28 -2.02 -16.13 16 3 C 0.16 3.44 6.52 39.02 0.25 3.69 16 4 C -0.17 -2.37 9.20 22.38 0.21 -2.16 16 5 C -0.06 -0.54 10.01 22.31 0.22 -0.32 16 6 C -0.15 -1.46 9.97 22.03 0.22 -1.24 16 7 C -0.05 -0.76 9.79 22.28 0.22 -0.54 16 8 C -0.15 -3.24 5.87 -20.14 -0.12 -3.36 16 9 C 0.02 0.50 9.70 23.79 0.23 0.73 16 10 C -0.21 -7.19 5.40 -19.76 -0.11 -7.29 16 11 C 0.12 4.51 5.51 85.56 0.47 4.99 16 12 N -0.68 -31.90 6.48 -521.97 -3.38 -35.29 16 13 C 0.17 9.13 4.51 85.56 0.39 9.52 16 14 C -0.53 -33.12 9.87 25.60 0.25 -32.86 16 15 H 0.03 2.30 8.06 -2.91 -0.02 2.28 16 16 C 0.01 0.51 5.47 84.66 0.46 0.97 16 17 N -0.95 -61.46 13.96 21.45 0.30 -61.16 16 18 Si 0.95 46.13 27.47 68.60 1.88 48.02 16 19 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 20 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 21 H -0.26 -11.88 6.54 99.48 0.65 -11.23 16 22 C 0.53 18.81 7.40 85.00 0.63 19.44 16 23 O -0.58 -25.45 15.63 -4.92 -0.08 -25.52 16 24 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 25 H 0.12 1.41 6.18 -2.39 -0.01 1.40 16 26 H 0.07 1.75 7.33 -2.38 -0.02 1.73 16 27 H 0.15 1.36 6.18 -2.91 -0.02 1.34 16 28 H 0.16 0.42 8.06 -2.91 -0.02 0.39 16 29 H 0.16 0.60 8.06 -2.91 -0.02 0.57 16 30 H 0.16 1.43 8.06 -2.91 -0.02 1.40 16 31 H 0.17 3.36 8.06 -2.92 -0.02 3.33 16 32 H 0.02 0.81 7.71 -2.39 -0.02 0.79 16 33 H 0.10 3.24 8.04 -2.38 -0.02 3.22 16 34 H 0.33 16.58 8.71 -89.70 -0.78 15.79 16 35 H -0.02 -1.09 7.20 -2.39 -0.02 -1.11 16 36 H 0.04 1.82 7.57 -2.38 -0.02 1.80 16 37 H 0.27 16.13 8.31 -92.71 -0.77 15.36 16 Total: -1.00 -82.35 312.05 1.55 -80.80 By element: Atomic # 1 Polarization: 15.00 SS G_CDS: 0.25 Total: 15.25 kcal Atomic # 6 Polarization: -10.56 SS G_CDS: 4.59 Total: -5.98 kcal Atomic # 7 Polarization: -107.47 SS G_CDS: -5.10 Total: -112.57 kcal Atomic # 8 Polarization: -25.45 SS G_CDS: -0.08 Total: -25.52 kcal Atomic # 14 Polarization: 46.13 SS G_CDS: 1.88 Total: 48.02 kcal Total: -82.35 1.55 -80.80 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000579345331.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.033 kcal (2) G-P(sol) polarization free energy of solvation -82.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds