Wall clock time and date at job start Mon Mar 30 2020 01:32:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 N 1.46500 * 109.46998 * 119.99945 * 2 1 3 5 5 C 1.34779 * 119.99741 * 275.00368 * 4 2 1 6 6 O 1.21279 * 120.00369 * 359.97438 * 5 4 2 7 7 C 1.50708 * 119.99762 * 179.97438 * 5 4 2 8 8 C 1.52992 * 109.46960 * 179.97438 * 7 5 4 9 9 C 1.50699 * 109.46945 * 180.02562 * 8 7 5 10 10 H 1.07996 * 120.00136 * 0.02562 * 9 8 7 11 11 C 1.37883 * 120.00193 * 180.02562 * 9 8 7 12 12 N 1.31513 * 120.00354 * 180.02562 * 11 9 8 13 13 Si 1.86807 * 119.99811 * 359.97438 * 11 9 8 14 14 H 1.48502 * 109.47000 * 89.99982 * 13 11 9 15 15 H 1.48501 * 109.47139 * 210.00325 * 13 11 9 16 16 H 1.48500 * 109.46816 * 330.00195 * 13 11 9 17 17 C 1.50697 * 109.47239 * 239.99664 * 2 1 3 18 18 C 1.38381 * 119.92871 * 279.72625 * 17 2 1 19 19 C 1.38341 * 120.30705 * 179.76169 * 18 17 2 20 20 C 1.37972 * 120.15068 * 0.51742 * 19 18 17 21 21 C 1.39617 * 119.84346 * 359.74056 * 20 19 18 22 22 C 1.43202 * 120.14707 * 179.97438 * 21 20 19 23 23 N 5.95819 * 111.54625 * 277.32371 * 2 1 3 24 24 C 1.37933 * 119.92089 * 100.00022 * 17 2 1 25 25 H 1.09001 * 109.46998 * 59.99708 * 1 2 3 26 26 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46801 * 300.00112 * 1 2 3 28 28 H 0.96997 * 120.00110 * 94.99637 * 4 2 1 29 29 H 1.08994 * 109.47136 * 300.00021 * 7 5 4 30 30 H 1.09002 * 109.46457 * 59.99935 * 7 5 4 31 31 H 1.08994 * 109.47599 * 300.00210 * 8 7 5 32 32 H 1.09002 * 109.47005 * 60.00348 * 8 7 5 33 33 H 0.96994 * 120.00143 * 179.97438 * 12 11 9 34 34 H 1.07999 * 119.84238 * 359.97438 * 18 17 2 35 35 H 1.07994 * 119.92382 * 180.25700 * 19 18 17 36 36 H 1.07994 * 120.07475 * 179.72112 * 20 19 18 37 37 H 1.07994 * 120.07374 * 0.02562 * 24 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.1470 -0.0182 2.3572 6 8 1.8589 1.1586 2.4115 7 6 2.6488 -0.7288 3.5878 8 6 2.7008 0.2545 4.7588 9 6 3.2032 -0.4559 5.9893 10 1 3.4600 -1.5037 5.9408 11 6 3.3349 0.2320 7.1770 12 7 3.7738 -0.3878 8.2507 13 14 2.8913 2.0447 7.2607 14 1 1.4586 2.1873 7.6242 15 1 3.7314 2.7130 8.2868 16 1 3.1314 2.6745 5.9375 17 6 2.0324 -0.7105 -1.2304 18 6 2.0715 -2.0934 -1.2615 19 6 2.5266 -2.7537 -2.3887 20 6 2.9549 -2.0362 -3.4866 21 6 2.9232 -0.6406 -3.4601 22 6 3.3667 0.1105 -4.5957 23 7 3.7182 0.7064 -5.4966 24 6 2.4575 0.0193 -2.3209 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 2.2490 -1.6317 1.1527 29 1 1.9759 -1.5505 3.8326 30 1 3.6479 -1.1213 3.3987 31 1 3.3739 1.0760 4.5138 32 1 1.7018 0.6474 4.9480 33 1 3.8668 0.0961 9.0861 34 1 1.7421 -2.6598 -0.4030 35 1 2.5506 -3.8332 -2.4078 36 1 3.3142 -2.5529 -4.3643 37 1 2.4310 1.0986 -2.2935 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000589706816.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:05 Heat of formation + Delta-G solvation = 3.100233 kcal Electronic energy + Delta-G solvation = -19266.539138 eV Core-core repulsion = 16201.396851 eV Total energy + Delta-G solvation = -3065.142286 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.41857 -39.13975 -36.95520 -35.52693 -33.49738 -32.11210 -31.72870 -31.11165 -29.49185 -26.19439 -24.61582 -23.94215 -22.00139 -21.01318 -19.77867 -18.73113 -17.31100 -16.75716 -16.34891 -15.97009 -15.32679 -15.09990 -14.68387 -14.45294 -14.11379 -13.81368 -13.65444 -13.52791 -13.27163 -13.12917 -12.74605 -12.56958 -12.40568 -12.27653 -11.92079 -11.75672 -11.43132 -11.15015 -10.97063 -10.18392 -10.06443 -9.80248 -9.46277 -9.41651 -9.22086 -9.15997 -8.98358 -8.51832 -6.04143 -4.03002 0.32214 0.81049 2.28149 2.52689 3.06502 3.26978 3.37098 3.43910 3.44097 3.53811 3.54481 4.17519 4.38165 4.49897 4.56107 4.73263 4.91239 5.00716 5.12633 5.29345 5.31431 5.36161 5.42656 5.56503 5.72023 5.78657 5.83829 5.99724 6.05579 6.06786 6.09041 6.31455 6.56852 6.66897 7.09319 7.34649 7.41929 7.68379 7.77972 8.48035 8.60164 8.98879 9.58918 11.08663 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.031285 B = 0.003172 C = 0.003100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.779182 B = 8825.193848 C = 9029.168528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.180 3.820 3 H 0.098 0.902 4 N -0.738 5.738 5 C 0.513 3.487 6 O -0.538 6.538 7 C -0.122 4.122 8 C 0.001 3.999 9 C -0.525 4.525 10 H 0.072 0.928 11 C 0.069 3.931 12 N -0.904 5.904 13 Si 0.877 3.123 14 H -0.277 1.277 15 H -0.289 1.289 16 H -0.261 1.261 17 C -0.086 4.086 18 C -0.083 4.083 19 C -0.114 4.114 20 C -0.072 4.072 21 C -0.027 4.027 22 C 0.255 3.745 23 N -0.417 5.417 24 C -0.059 4.059 25 H 0.064 0.936 26 H 0.059 0.941 27 H 0.069 0.931 28 H 0.398 0.602 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.023 0.977 32 H 0.019 0.981 33 H 0.263 0.737 34 H 0.132 0.868 35 H 0.136 0.864 36 H 0.133 0.867 37 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.108 -6.237 -22.976 24.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.075 3.925 3 H 0.116 0.884 4 N -0.393 5.393 5 C 0.301 3.699 6 O -0.413 6.413 7 C -0.162 4.162 8 C -0.036 4.036 9 C -0.563 4.563 10 H 0.091 0.909 11 C -0.133 4.133 12 N -0.542 5.542 13 Si 0.704 3.296 14 H -0.202 1.202 15 H -0.215 1.215 16 H -0.185 1.185 17 C -0.087 4.087 18 C -0.102 4.102 19 C -0.132 4.132 20 C -0.093 4.093 21 C -0.030 4.030 22 C -0.060 4.060 23 N -0.092 5.092 24 C -0.080 4.080 25 H 0.083 0.917 26 H 0.078 0.922 27 H 0.088 0.912 28 H 0.233 0.767 29 H 0.104 0.896 30 H 0.105 0.895 31 H 0.042 0.958 32 H 0.037 0.963 33 H 0.073 0.927 34 H 0.150 0.850 35 H 0.154 0.846 36 H 0.151 0.849 37 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -4.722 -4.402 -24.126 24.975 hybrid contribution -0.212 0.159 0.464 0.534 sum -4.934 -4.243 -23.662 24.541 Atomic orbital electron populations 1.22181 0.94068 1.02495 1.02942 1.19733 0.94323 0.97004 0.81477 0.88439 1.46332 1.69448 1.14023 1.09448 1.21562 0.76200 0.87561 0.84547 1.90657 1.49273 1.16437 1.84965 1.21677 1.01719 1.00628 0.92192 1.19366 0.97537 0.94594 0.92147 1.21110 1.44227 0.98277 0.92704 0.90938 1.24978 0.94445 0.98285 0.95548 1.69907 1.46800 1.36758 1.00775 0.86797 0.78613 0.85784 0.78362 1.20246 1.21470 1.18516 1.19940 0.99249 0.93977 0.95507 1.21260 0.96822 0.93724 0.98354 1.21101 0.98884 1.00572 0.92675 1.21207 0.97330 0.91645 0.99099 1.15942 1.05068 0.92138 0.89895 1.25703 0.93677 0.93549 0.93091 1.81270 1.08950 1.08341 1.10661 1.21046 0.95451 1.00497 0.91037 0.91690 0.92195 0.91178 0.76707 0.89563 0.89550 0.95828 0.96267 0.92709 0.84980 0.84572 0.84925 0.84660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.48 9.46 37.16 0.35 -1.12 16 2 C 0.18 1.80 2.77 -69.08 -0.19 1.60 16 3 H 0.10 1.15 7.43 -51.93 -0.39 0.76 16 4 N -0.74 -8.46 5.03 -54.93 -0.28 -8.74 16 5 C 0.51 8.54 7.79 -10.98 -0.09 8.45 16 6 O -0.54 -11.10 15.64 5.56 0.09 -11.01 16 7 C -0.12 -2.23 5.64 -27.88 -0.16 -2.38 16 8 C 0.00 0.04 3.33 -27.89 -0.09 -0.06 16 9 C -0.53 -14.74 9.66 -34.44 -0.33 -15.07 16 10 H 0.07 2.12 7.99 -52.49 -0.42 1.70 16 11 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 12 N -0.90 -27.72 13.96 55.43 0.77 -26.95 16 13 Si 0.88 22.31 27.47 -169.99 -4.67 17.64 16 14 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 15 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 16 H -0.26 -6.59 6.54 56.52 0.37 -6.22 16 17 C -0.09 -0.66 4.95 -104.68 -0.52 -1.18 16 18 C -0.08 -0.49 9.05 -39.49 -0.36 -0.85 16 19 C -0.11 -0.56 10.03 -39.64 -0.40 -0.96 16 20 C -0.07 -0.40 9.76 -39.16 -0.38 -0.79 16 21 C -0.03 -0.20 5.73 -106.93 -0.61 -0.81 16 22 C 0.26 2.39 15.33 -22.48 -0.34 2.05 16 23 N -0.42 -4.93 18.54 41.83 0.78 -4.16 16 24 C -0.06 -0.45 9.37 -39.17 -0.37 -0.81 16 25 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.40 3.41 6.84 -40.82 -0.28 3.13 16 29 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 30 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 31 H 0.02 0.60 7.16 -51.93 -0.37 0.23 16 32 H 0.02 0.48 7.53 -51.93 -0.39 0.09 16 33 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 34 H 0.13 0.60 6.89 -52.49 -0.36 0.24 16 35 H 0.14 0.37 8.06 -52.49 -0.42 -0.06 16 36 H 0.13 0.51 8.06 -52.49 -0.42 0.09 16 37 H 0.14 0.92 8.03 -52.49 -0.42 0.50 16 LS Contribution 326.75 15.07 4.92 4.92 Total: -1.00 -34.64 326.75 -6.73 -41.37 By element: Atomic # 1 Polarization: 1.70 SS G_CDS: -4.76 Total: -3.06 kcal Atomic # 6 Polarization: -6.44 SS G_CDS: -3.59 Total: -10.02 kcal Atomic # 7 Polarization: -41.11 SS G_CDS: 1.27 Total: -39.84 kcal Atomic # 8 Polarization: -11.10 SS G_CDS: 0.09 Total: -11.01 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -4.67 Total: 17.64 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -34.64 -6.73 -41.37 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589706816.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.467 kcal (2) G-P(sol) polarization free energy of solvation -34.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.367 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds