Wall clock time and date at job start Mon Mar 30 2020 01:32:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 N 1.46500 * 109.46998 * 119.99945 * 2 1 3 5 5 C 1.34779 * 119.99741 * 275.00368 * 4 2 1 6 6 O 1.21279 * 120.00369 * 359.97438 * 5 4 2 7 7 C 1.50708 * 119.99762 * 179.97438 * 5 4 2 8 8 C 1.52992 * 109.46960 * 179.97438 * 7 5 4 9 9 C 1.50699 * 109.46945 * 180.02562 * 8 7 5 10 10 H 1.07996 * 120.00136 * 0.02562 * 9 8 7 11 11 C 1.37883 * 120.00193 * 180.02562 * 9 8 7 12 12 N 1.31513 * 120.00354 * 180.02562 * 11 9 8 13 13 Si 1.86807 * 119.99811 * 359.97438 * 11 9 8 14 14 H 1.48502 * 109.47000 * 89.99982 * 13 11 9 15 15 H 1.48501 * 109.47139 * 210.00325 * 13 11 9 16 16 H 1.48500 * 109.46816 * 330.00195 * 13 11 9 17 17 C 1.50697 * 109.47239 * 239.99664 * 2 1 3 18 18 C 1.38381 * 119.92871 * 279.72625 * 17 2 1 19 19 C 1.38341 * 120.30705 * 179.76169 * 18 17 2 20 20 C 1.37972 * 120.15068 * 0.51742 * 19 18 17 21 21 C 1.39617 * 119.84346 * 359.74056 * 20 19 18 22 22 C 1.43202 * 120.14707 * 179.97438 * 21 20 19 23 23 N 5.95819 * 111.54625 * 277.32371 * 2 1 3 24 24 C 1.37933 * 119.92089 * 100.00022 * 17 2 1 25 25 H 1.09001 * 109.46998 * 59.99708 * 1 2 3 26 26 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46801 * 300.00112 * 1 2 3 28 28 H 0.96997 * 120.00110 * 94.99637 * 4 2 1 29 29 H 1.08994 * 109.47136 * 300.00021 * 7 5 4 30 30 H 1.09002 * 109.46457 * 59.99935 * 7 5 4 31 31 H 1.08994 * 109.47599 * 300.00210 * 8 7 5 32 32 H 1.09002 * 109.47005 * 60.00348 * 8 7 5 33 33 H 0.96994 * 120.00143 * 179.97438 * 12 11 9 34 34 H 1.07999 * 119.84238 * 359.97438 * 18 17 2 35 35 H 1.07994 * 119.92382 * 180.25700 * 19 18 17 36 36 H 1.07994 * 120.07475 * 179.72112 * 20 19 18 37 37 H 1.07994 * 120.07374 * 0.02562 * 24 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.1470 -0.0182 2.3572 6 8 1.8589 1.1586 2.4115 7 6 2.6488 -0.7288 3.5878 8 6 2.7008 0.2545 4.7588 9 6 3.2032 -0.4559 5.9893 10 1 3.4600 -1.5037 5.9408 11 6 3.3349 0.2320 7.1770 12 7 3.7738 -0.3878 8.2507 13 14 2.8913 2.0447 7.2607 14 1 1.4586 2.1873 7.6242 15 1 3.7314 2.7130 8.2868 16 1 3.1314 2.6745 5.9375 17 6 2.0324 -0.7105 -1.2304 18 6 2.0715 -2.0934 -1.2615 19 6 2.5266 -2.7537 -2.3887 20 6 2.9549 -2.0362 -3.4866 21 6 2.9232 -0.6406 -3.4601 22 6 3.3667 0.1105 -4.5957 23 7 3.7182 0.7064 -5.4966 24 6 2.4575 0.0193 -2.3209 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 2.2490 -1.6317 1.1527 29 1 1.9759 -1.5505 3.8326 30 1 3.6479 -1.1213 3.3987 31 1 3.3739 1.0760 4.5138 32 1 1.7018 0.6474 4.9480 33 1 3.8668 0.0961 9.0861 34 1 1.7421 -2.6598 -0.4030 35 1 2.5506 -3.8332 -2.4078 36 1 3.3142 -2.5529 -4.3643 37 1 2.4310 1.0986 -2.2935 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000589706816.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:04 Heat of formation + Delta-G solvation = -19.107077 kcal Electronic energy + Delta-G solvation = -19267.502119 eV Core-core repulsion = 16201.396851 eV Total energy + Delta-G solvation = -3066.105268 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.21474 -40.16512 -37.77487 -36.46835 -35.47891 -33.49067 -32.55824 -32.25151 -30.25921 -27.95158 -25.21311 -24.79141 -23.17502 -22.16406 -21.11252 -19.52237 -19.09833 -17.71216 -17.24980 -16.92382 -16.43290 -16.32410 -16.00982 -15.32677 -15.16033 -14.91479 -14.71529 -14.57923 -14.36619 -14.16426 -13.89087 -13.85216 -13.35654 -13.23929 -13.00559 -12.87668 -12.54637 -12.38679 -12.06216 -11.93940 -11.78237 -11.73168 -11.36203 -10.75713 -10.73503 -10.14127 -9.92691 -9.77792 -8.29167 -6.31482 -0.21048 0.31788 1.34806 1.37230 1.51819 1.56172 1.75287 1.89897 2.28747 2.36946 2.83169 2.88939 3.06925 3.53568 3.91082 4.05276 4.13390 4.23599 4.27806 4.37180 4.46374 4.54013 4.57061 4.72087 4.82267 4.96299 4.99386 5.08036 5.26265 5.33001 5.36659 5.39618 5.43349 5.49736 5.63450 5.65838 5.85551 6.26479 6.39761 6.63898 6.75606 7.33959 7.37431 8.86430 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.031285 B = 0.003172 C = 0.003100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.779182 B = 8825.193848 C = 9029.168528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.181 3.819 3 H 0.076 0.924 4 N -0.713 5.713 5 C 0.517 3.483 6 O -0.584 6.584 7 C -0.117 4.117 8 C 0.004 3.996 9 C -0.527 4.527 10 H 0.052 0.948 11 C 0.013 3.987 12 N -0.944 5.944 13 Si 0.937 3.063 14 H -0.269 1.269 15 H -0.281 1.281 16 H -0.261 1.261 17 C -0.095 4.095 18 C -0.077 4.077 19 C -0.107 4.107 20 C -0.062 4.062 21 C -0.040 4.040 22 C 0.278 3.722 23 N -0.469 5.469 24 C -0.064 4.064 25 H 0.079 0.921 26 H 0.077 0.923 27 H 0.041 0.959 28 H 0.415 0.585 29 H 0.105 0.895 30 H 0.102 0.898 31 H 0.008 0.992 32 H 0.009 0.991 33 H 0.266 0.734 34 H 0.151 0.849 35 H 0.167 0.833 36 H 0.153 0.847 37 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.708 -7.784 -24.471 26.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.076 3.924 3 H 0.094 0.906 4 N -0.368 5.368 5 C 0.306 3.694 6 O -0.464 6.464 7 C -0.157 4.157 8 C -0.034 4.034 9 C -0.565 4.565 10 H 0.070 0.930 11 C -0.185 4.185 12 N -0.585 5.585 13 Si 0.762 3.238 14 H -0.194 1.194 15 H -0.206 1.206 16 H -0.186 1.186 17 C -0.096 4.096 18 C -0.096 4.096 19 C -0.124 4.124 20 C -0.083 4.083 21 C -0.044 4.044 22 C -0.036 4.036 23 N -0.145 5.145 24 C -0.085 4.085 25 H 0.098 0.902 26 H 0.096 0.904 27 H 0.060 0.940 28 H 0.254 0.746 29 H 0.124 0.876 30 H 0.121 0.879 31 H 0.026 0.974 32 H 0.027 0.973 33 H 0.075 0.925 34 H 0.169 0.831 35 H 0.185 0.815 36 H 0.170 0.830 37 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -5.324 -5.997 -25.664 26.888 hybrid contribution -0.021 0.503 0.896 1.028 sum -5.346 -5.494 -24.768 25.927 Atomic orbital electron populations 1.22134 0.93357 1.03457 1.02271 1.19739 0.94857 0.96163 0.81628 0.90634 1.46043 1.67620 1.14680 1.08432 1.21155 0.76020 0.86812 0.85443 1.90648 1.51634 1.18309 1.85773 1.21501 1.03485 0.99642 0.91067 1.19227 0.96058 0.95174 0.92970 1.21456 1.43205 0.97643 0.94151 0.92986 1.25799 0.94735 1.02486 0.95468 1.70019 1.48478 1.38526 1.01489 0.85851 0.78766 0.80893 0.78321 1.19375 1.20622 1.18564 1.19659 1.00861 0.94721 0.94343 1.21522 0.95806 0.92876 0.99427 1.21426 0.97404 1.02024 0.91560 1.21513 0.95941 0.90747 1.00082 1.15984 1.06394 0.92884 0.89134 1.26010 0.92335 0.92550 0.92703 1.81287 1.10990 1.09814 1.12367 1.21039 0.95543 1.00629 0.91253 0.90220 0.90358 0.94008 0.74613 0.87635 0.87941 0.97355 0.97299 0.92457 0.83109 0.81501 0.82968 0.84940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.62 9.46 71.98 0.68 -1.94 16 2 C 0.18 3.33 2.77 44.25 0.12 3.45 16 3 H 0.08 1.77 7.43 -2.39 -0.02 1.75 16 4 N -0.71 -14.80 5.03 -446.08 -2.24 -17.04 16 5 C 0.52 16.63 7.79 87.66 0.68 17.31 16 6 O -0.58 -24.14 15.64 -3.03 -0.05 -24.19 16 7 C -0.12 -4.10 5.64 29.85 0.17 -3.93 16 8 C 0.00 0.18 3.33 29.85 0.10 0.28 16 9 C -0.53 -29.71 9.66 25.60 0.25 -29.46 16 10 H 0.05 3.07 7.99 -2.91 -0.02 3.05 16 11 C 0.01 0.74 5.47 84.66 0.46 1.21 16 12 N -0.94 -58.56 13.96 21.45 0.30 -58.26 16 13 Si 0.94 46.31 27.47 68.60 1.88 48.19 16 14 H -0.27 -12.83 7.11 99.48 0.71 -12.12 16 15 H -0.28 -13.40 7.11 99.48 0.71 -12.69 16 16 H -0.26 -12.84 6.54 99.48 0.65 -12.19 16 17 C -0.10 -1.22 4.95 -19.90 -0.10 -1.32 16 18 C -0.08 -0.61 9.05 22.33 0.20 -0.41 16 19 C -0.11 -0.56 10.03 22.23 0.22 -0.34 16 20 C -0.06 -0.48 9.76 22.54 0.22 -0.26 16 21 C -0.04 -0.51 5.73 -21.36 -0.12 -0.63 16 22 C 0.28 4.99 15.33 88.33 1.35 6.34 16 23 N -0.47 -11.06 18.54 19.00 0.35 -10.71 16 24 C -0.06 -0.86 9.37 22.54 0.21 -0.64 16 25 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 26 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 27 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 28 H 0.42 5.66 6.84 -92.71 -0.63 5.03 16 29 H 0.11 3.27 8.14 -2.39 -0.02 3.25 16 30 H 0.10 3.24 8.14 -2.39 -0.02 3.22 16 31 H 0.01 0.41 7.16 -2.39 -0.02 0.40 16 32 H 0.01 0.43 7.53 -2.39 -0.02 0.41 16 33 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 34 H 0.15 0.62 6.89 -2.91 -0.02 0.60 16 35 H 0.17 -0.07 8.06 -2.91 -0.02 -0.09 16 36 H 0.15 0.58 8.06 -2.91 -0.02 0.56 16 37 H 0.13 1.77 8.03 -2.91 -0.02 1.75 16 Total: -1.00 -76.76 326.75 5.10 -71.66 By element: Atomic # 1 Polarization: 0.29 SS G_CDS: 0.40 Total: 0.69 kcal Atomic # 6 Polarization: -14.80 SS G_CDS: 4.45 Total: -10.34 kcal Atomic # 7 Polarization: -84.42 SS G_CDS: -1.59 Total: -86.01 kcal Atomic # 8 Polarization: -24.14 SS G_CDS: -0.05 Total: -24.19 kcal Atomic # 14 Polarization: 46.31 SS G_CDS: 1.88 Total: 48.19 kcal Total: -76.76 5.10 -71.66 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589706816.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.558 kcal (2) G-P(sol) polarization free energy of solvation -76.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds