Wall clock time and date at job start Mon Mar 30 2020 01:32:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.46821 * 2 1 4 4 N 1.46496 * 109.47129 * 240.00164 * 2 1 3 5 5 C 1.34777 * 120.00258 * 85.00009 * 4 2 1 6 6 O 1.21279 * 120.00166 * 359.97438 * 5 4 2 7 7 C 1.50706 * 119.99762 * 179.97438 * 5 4 2 8 8 C 1.53002 * 109.46925 * 179.97438 * 7 5 4 9 9 C 1.50696 * 109.47300 * 180.02562 * 8 7 5 10 10 H 1.07999 * 119.99822 * 0.02562 * 9 8 7 11 11 C 1.37876 * 120.00339 * 179.97438 * 9 8 7 12 12 N 1.31514 * 119.99769 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 120.00300 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.47118 * 89.99790 * 13 11 9 15 15 H 1.48499 * 109.47134 * 210.00310 * 13 11 9 16 16 H 1.48498 * 109.47011 * 329.99931 * 13 11 9 17 17 C 1.50698 * 109.47254 * 119.99584 * 2 1 3 18 18 C 1.38384 * 119.92312 * 80.00290 * 17 2 1 19 19 C 1.38335 * 120.30732 * 179.97438 * 18 17 2 20 20 C 1.37973 * 120.14911 * 359.97438 * 19 18 17 21 21 C 1.39609 * 119.84666 * 0.02562 * 20 19 18 22 22 C 1.43196 * 120.15172 * 180.02562 * 21 20 19 23 23 N 5.95826 * 111.55980 * 82.67211 * 2 1 3 24 24 C 1.37921 * 119.92478 * 259.72718 * 17 2 1 25 25 H 1.09002 * 109.46821 * 179.97438 * 1 2 3 26 26 H 1.08992 * 109.47302 * 300.00204 * 1 2 3 27 27 H 1.09006 * 109.47229 * 60.00541 * 1 2 3 28 28 H 0.96999 * 119.99694 * 264.99399 * 4 2 1 29 29 H 1.09000 * 109.47318 * 299.99141 * 7 5 4 30 30 H 1.09000 * 109.47161 * 59.99772 * 7 5 4 31 31 H 1.09004 * 109.46930 * 299.99901 * 8 7 5 32 32 H 1.09004 * 109.47059 * 59.99503 * 8 7 5 33 33 H 0.97000 * 120.00540 * 179.97438 * 12 11 9 34 34 H 1.08002 * 119.84455 * 0.02562 * 18 17 2 35 35 H 1.08002 * 119.92971 * 179.97438 * 19 18 17 36 36 H 1.08003 * 120.07376 * 180.02562 * 20 19 18 37 37 H 1.08005 * 120.07822 * 359.97438 * 24 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1471 -0.0182 -2.3571 6 8 1.8582 1.1584 -2.4118 7 6 2.6500 -0.7286 -3.5874 8 6 2.7007 0.2543 -4.7589 9 6 3.2030 -0.4561 -5.9893 10 1 3.4599 -1.5039 -5.9408 11 6 3.3336 0.2314 -7.1773 12 7 3.0203 1.5073 -7.2365 13 14 3.9556 -0.6494 -8.7027 14 1 2.8053 -1.2215 -9.4475 15 1 4.6775 0.3148 -9.5713 16 1 4.8784 -1.7416 -8.3019 17 6 2.0324 -0.7103 1.2305 18 6 2.0662 -2.0933 1.2637 19 6 2.5263 -2.7535 2.3890 20 6 2.9555 -2.0359 3.4865 21 6 2.9241 -0.6404 3.4598 22 6 3.3684 0.1109 4.5949 23 7 3.7195 0.7068 5.4961 24 6 2.4627 0.0196 2.3188 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8901 28 1 2.2491 -1.6317 -1.1525 29 1 3.6494 -1.1203 -3.3979 30 1 1.9778 -1.5509 -3.8325 31 1 1.7012 0.6457 -4.9483 32 1 3.3726 1.0770 -4.5140 33 1 3.1125 1.9912 -8.0721 34 1 1.7326 -2.6599 0.4069 35 1 2.5497 -3.8331 2.4085 36 1 3.3148 -2.5526 4.3642 37 1 2.4403 1.0990 2.2897 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000589706818.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:07 Heat of formation + Delta-G solvation = 0.286757 kcal Electronic energy + Delta-G solvation = -19204.752782 eV Core-core repulsion = 16139.488495 eV Total energy + Delta-G solvation = -3065.264288 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.35531 -39.02298 -36.90731 -35.43520 -33.46078 -32.03443 -31.68177 -30.81557 -29.36836 -25.81316 -24.57232 -23.91087 -22.10599 -21.16086 -19.72010 -18.66859 -17.04886 -16.67716 -16.19863 -15.78429 -15.22218 -14.96039 -14.62548 -14.44503 -14.38042 -13.77998 -13.55080 -13.47847 -13.15624 -13.08524 -12.64408 -12.36487 -12.23572 -12.07644 -11.85749 -11.66918 -11.17584 -11.08013 -10.93664 -10.60669 -9.97168 -9.68355 -9.41412 -9.35500 -9.16853 -9.00425 -8.88258 -8.32955 -5.97043 -4.01496 0.35947 0.85226 2.31404 2.56322 3.20749 3.32562 3.33795 3.39140 3.41464 3.47679 3.60680 4.23064 4.42069 4.46700 4.59891 4.77633 4.96248 5.06486 5.19932 5.34887 5.38014 5.44083 5.51119 5.64316 5.78992 5.82663 5.87930 6.08127 6.14466 6.20848 6.22279 6.35759 6.67807 6.87301 7.12619 7.73190 7.81558 7.85034 8.06077 8.37434 8.73453 9.07132 9.62162 11.13882 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.032351 B = 0.002974 C = 0.002932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.288090 B = 9413.919102 C = 9547.244981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.179 3.821 3 H 0.098 0.902 4 N -0.740 5.740 5 C 0.512 3.488 6 O -0.532 6.532 7 C -0.130 4.130 8 C 0.037 3.963 9 C -0.527 4.527 10 H 0.056 0.944 11 C 0.058 3.942 12 N -0.890 5.890 13 Si 0.892 3.108 14 H -0.281 1.281 15 H -0.287 1.287 16 H -0.274 1.274 17 C -0.085 4.085 18 C -0.083 4.083 19 C -0.115 4.115 20 C -0.073 4.073 21 C -0.027 4.027 22 C 0.256 3.744 23 N -0.418 5.418 24 C -0.059 4.059 25 H 0.058 0.942 26 H 0.064 0.936 27 H 0.070 0.930 28 H 0.396 0.604 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.023 0.977 32 H 0.023 0.977 33 H 0.261 0.739 34 H 0.132 0.868 35 H 0.136 0.864 36 H 0.132 0.868 37 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.339 -10.497 20.264 23.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.074 3.926 3 H 0.116 0.884 4 N -0.395 5.395 5 C 0.301 3.699 6 O -0.406 6.406 7 C -0.170 4.170 8 C -0.001 4.001 9 C -0.566 4.566 10 H 0.074 0.926 11 C -0.144 4.144 12 N -0.528 5.528 13 Si 0.720 3.280 14 H -0.207 1.207 15 H -0.212 1.212 16 H -0.199 1.199 17 C -0.086 4.086 18 C -0.102 4.102 19 C -0.133 4.133 20 C -0.093 4.093 21 C -0.031 4.031 22 C -0.060 4.060 23 N -0.093 5.093 24 C -0.080 4.080 25 H 0.077 0.923 26 H 0.083 0.917 27 H 0.089 0.911 28 H 0.231 0.769 29 H 0.098 0.902 30 H 0.098 0.902 31 H 0.042 0.958 32 H 0.042 0.958 33 H 0.071 0.929 34 H 0.150 0.850 35 H 0.154 0.846 36 H 0.150 0.850 37 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -3.006 -8.525 21.478 23.303 hybrid contribution 0.318 -1.142 -1.148 1.650 sum -2.688 -9.667 20.330 22.671 Atomic orbital electron populations 1.22179 0.94134 1.02404 1.02956 1.19723 0.94288 0.97038 0.81508 0.88448 1.46371 1.69727 1.13917 1.09488 1.21585 0.76298 0.87636 0.84418 1.90674 1.48807 1.16369 1.84794 1.21875 1.00931 1.01060 0.93130 1.18900 0.98376 0.93337 0.89460 1.21217 1.44429 0.96331 0.94582 0.92614 1.25026 0.95564 0.94837 0.98968 1.69993 1.48163 1.08138 1.26528 0.86595 0.78908 0.79397 0.83070 1.20677 1.21233 1.19892 1.19961 0.99065 0.93966 0.95562 1.21259 0.96837 0.93754 0.98325 1.21093 0.98951 1.00522 0.92735 1.21196 0.97426 0.91651 0.99075 1.15942 1.05115 0.92129 0.89886 1.25707 0.93657 0.93535 0.93084 1.81271 1.08995 1.08342 1.10670 1.21061 0.95415 1.00539 0.91005 0.92288 0.91744 0.91117 0.76913 0.90206 0.90204 0.95819 0.95815 0.92940 0.85009 0.84631 0.84966 0.84621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.59 9.46 37.16 0.35 -1.23 16 2 C 0.18 1.92 2.77 -69.09 -0.19 1.73 16 3 H 0.10 1.23 7.43 -51.93 -0.39 0.84 16 4 N -0.74 -9.07 5.02 -54.93 -0.28 -9.35 16 5 C 0.51 9.11 7.79 -10.98 -0.09 9.03 16 6 O -0.53 -11.79 15.65 5.56 0.09 -11.70 16 7 C -0.13 -2.50 5.64 -27.88 -0.16 -2.65 16 8 C 0.04 0.97 4.26 -27.88 -0.12 0.85 16 9 C -0.53 -14.69 9.11 -34.44 -0.31 -15.00 16 10 H 0.06 1.46 7.74 -52.49 -0.41 1.05 16 11 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 12 N -0.89 -27.16 13.29 55.43 0.74 -26.42 16 13 Si 0.89 21.39 29.54 -169.99 -5.02 16.37 16 14 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 15 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 16 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 17 C -0.08 -0.69 4.95 -104.69 -0.52 -1.21 16 18 C -0.08 -0.53 9.05 -39.49 -0.36 -0.88 16 19 C -0.12 -0.60 10.03 -39.64 -0.40 -1.00 16 20 C -0.07 -0.43 9.76 -39.17 -0.38 -0.81 16 21 C -0.03 -0.21 5.73 -106.93 -0.61 -0.82 16 22 C 0.26 2.47 15.33 -22.47 -0.34 2.13 16 23 N -0.42 -5.05 18.54 41.84 0.78 -4.28 16 24 C -0.06 -0.47 9.37 -39.17 -0.37 -0.84 16 25 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.40 3.65 6.86 -40.82 -0.28 3.37 16 29 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 30 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 31 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 32 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 33 H 0.26 7.48 8.31 -40.82 -0.34 7.15 16 34 H 0.13 0.65 6.90 -52.49 -0.36 0.29 16 35 H 0.14 0.40 8.06 -52.49 -0.42 -0.02 16 36 H 0.13 0.55 8.06 -52.48 -0.42 0.12 16 37 H 0.14 0.99 8.03 -52.48 -0.42 0.57 16 LS Contribution 330.37 15.07 4.98 4.98 Total: -1.00 -34.57 330.37 -7.10 -41.68 By element: Atomic # 1 Polarization: 2.68 SS G_CDS: -4.79 Total: -2.11 kcal Atomic # 6 Polarization: -5.57 SS G_CDS: -3.59 Total: -9.16 kcal Atomic # 7 Polarization: -41.29 SS G_CDS: 1.24 Total: -40.05 kcal Atomic # 8 Polarization: -11.79 SS G_CDS: 0.09 Total: -11.70 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -34.57 -7.10 -41.68 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589706818.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.962 kcal (2) G-P(sol) polarization free energy of solvation -34.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.675 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds