Wall clock time and date at job start Mon Mar 30 2020 01:32:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.46821 * 2 1 4 4 N 1.46496 * 109.47129 * 240.00164 * 2 1 3 5 5 C 1.34777 * 120.00258 * 85.00009 * 4 2 1 6 6 O 1.21279 * 120.00166 * 359.97438 * 5 4 2 7 7 C 1.50706 * 119.99762 * 179.97438 * 5 4 2 8 8 C 1.53002 * 109.46925 * 179.97438 * 7 5 4 9 9 C 1.50696 * 109.47300 * 180.02562 * 8 7 5 10 10 H 1.07999 * 119.99822 * 0.02562 * 9 8 7 11 11 C 1.37876 * 120.00339 * 179.97438 * 9 8 7 12 12 N 1.31514 * 119.99769 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 120.00300 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.47118 * 89.99790 * 13 11 9 15 15 H 1.48499 * 109.47134 * 210.00310 * 13 11 9 16 16 H 1.48498 * 109.47011 * 329.99931 * 13 11 9 17 17 C 1.50698 * 109.47254 * 119.99584 * 2 1 3 18 18 C 1.38384 * 119.92312 * 80.00290 * 17 2 1 19 19 C 1.38335 * 120.30732 * 179.97438 * 18 17 2 20 20 C 1.37973 * 120.14911 * 359.97438 * 19 18 17 21 21 C 1.39609 * 119.84666 * 0.02562 * 20 19 18 22 22 C 1.43196 * 120.15172 * 180.02562 * 21 20 19 23 23 N 5.95826 * 111.55980 * 82.67211 * 2 1 3 24 24 C 1.37921 * 119.92478 * 259.72718 * 17 2 1 25 25 H 1.09002 * 109.46821 * 179.97438 * 1 2 3 26 26 H 1.08992 * 109.47302 * 300.00204 * 1 2 3 27 27 H 1.09006 * 109.47229 * 60.00541 * 1 2 3 28 28 H 0.96999 * 119.99694 * 264.99399 * 4 2 1 29 29 H 1.09000 * 109.47318 * 299.99141 * 7 5 4 30 30 H 1.09000 * 109.47161 * 59.99772 * 7 5 4 31 31 H 1.09004 * 109.46930 * 299.99901 * 8 7 5 32 32 H 1.09004 * 109.47059 * 59.99503 * 8 7 5 33 33 H 0.97000 * 120.00540 * 179.97438 * 12 11 9 34 34 H 1.08002 * 119.84455 * 0.02562 * 18 17 2 35 35 H 1.08002 * 119.92971 * 179.97438 * 19 18 17 36 36 H 1.08003 * 120.07376 * 180.02562 * 20 19 18 37 37 H 1.08005 * 120.07822 * 359.97438 * 24 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1471 -0.0182 -2.3571 6 8 1.8582 1.1584 -2.4118 7 6 2.6500 -0.7286 -3.5874 8 6 2.7007 0.2543 -4.7589 9 6 3.2030 -0.4561 -5.9893 10 1 3.4599 -1.5039 -5.9408 11 6 3.3336 0.2314 -7.1773 12 7 3.0203 1.5073 -7.2365 13 14 3.9556 -0.6494 -8.7027 14 1 2.8053 -1.2215 -9.4475 15 1 4.6775 0.3148 -9.5713 16 1 4.8784 -1.7416 -8.3019 17 6 2.0324 -0.7103 1.2305 18 6 2.0662 -2.0933 1.2637 19 6 2.5263 -2.7535 2.3890 20 6 2.9555 -2.0359 3.4865 21 6 2.9241 -0.6404 3.4598 22 6 3.3684 0.1109 4.5949 23 7 3.7195 0.7068 5.4961 24 6 2.4627 0.0196 2.3188 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8901 28 1 2.2491 -1.6317 -1.1525 29 1 3.6494 -1.1203 -3.3979 30 1 1.9778 -1.5509 -3.8325 31 1 1.7012 0.6457 -4.9483 32 1 3.3726 1.0770 -4.5140 33 1 3.1125 1.9912 -8.0721 34 1 1.7326 -2.6599 0.4069 35 1 2.5497 -3.8331 2.4085 36 1 3.3148 -2.5526 4.3642 37 1 2.4403 1.0990 2.2897 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000589706818.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:07 Heat of formation + Delta-G solvation = -21.960511 kcal Electronic energy + Delta-G solvation = -19205.717496 eV Core-core repulsion = 16139.488495 eV Total energy + Delta-G solvation = -3066.229002 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.20218 -40.14832 -37.76812 -36.45552 -35.49720 -33.34222 -32.37866 -32.22621 -30.22066 -27.67880 -25.23105 -24.87297 -23.45665 -22.20960 -21.10915 -19.45643 -18.76826 -17.58818 -17.23725 -16.92150 -16.48739 -16.36937 -16.04380 -15.33160 -15.15344 -14.82781 -14.64856 -14.35708 -14.18146 -14.15500 -13.87287 -13.80276 -13.22936 -13.17685 -13.00406 -12.79454 -12.55090 -12.46355 -12.35425 -11.86991 -11.79624 -11.58906 -11.26650 -10.69796 -10.54203 -10.12830 -9.92305 -9.77581 -8.15295 -6.28947 -0.20745 0.32100 1.44360 1.46867 1.56235 1.57675 1.78395 1.90236 2.28663 2.47280 2.83474 2.89478 3.17997 3.53716 3.91322 4.09986 4.13823 4.23943 4.27810 4.38417 4.54455 4.57317 4.63134 4.72277 4.82107 4.97018 4.99578 5.15189 5.25969 5.33292 5.38841 5.42362 5.53386 5.65215 5.68474 5.86088 5.89677 6.21204 6.39902 6.66803 6.90447 7.40553 7.42715 8.97330 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.032351 B = 0.002974 C = 0.002932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.288090 B = 9413.919102 C = 9547.244981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.180 3.820 3 H 0.071 0.929 4 N -0.712 5.712 5 C 0.514 3.486 6 O -0.587 6.587 7 C -0.120 4.120 8 C 0.041 3.959 9 C -0.541 4.541 10 H 0.077 0.923 11 C -0.008 4.008 12 N -0.939 5.939 13 Si 0.972 3.028 14 H -0.272 1.272 15 H -0.288 1.288 16 H -0.254 1.254 17 C -0.095 4.095 18 C -0.077 4.077 19 C -0.105 4.105 20 C -0.062 4.062 21 C -0.040 4.040 22 C 0.278 3.722 23 N -0.469 5.469 24 C -0.065 4.065 25 H 0.080 0.920 26 H 0.079 0.921 27 H 0.037 0.963 28 H 0.416 0.584 29 H 0.104 0.896 30 H 0.107 0.893 31 H -0.018 1.018 32 H -0.019 1.019 33 H 0.262 0.738 34 H 0.152 0.848 35 H 0.169 0.831 36 H 0.154 0.846 37 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.973 -14.620 20.809 25.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.075 3.925 3 H 0.089 0.911 4 N -0.367 5.367 5 C 0.302 3.698 6 O -0.466 6.466 7 C -0.159 4.159 8 C 0.003 3.997 9 C -0.578 4.578 10 H 0.095 0.905 11 C -0.206 4.206 12 N -0.579 5.579 13 Si 0.796 3.204 14 H -0.197 1.197 15 H -0.214 1.214 16 H -0.178 1.178 17 C -0.095 4.095 18 C -0.095 4.095 19 C -0.123 4.123 20 C -0.082 4.082 21 C -0.044 4.044 22 C -0.036 4.036 23 N -0.144 5.144 24 C -0.086 4.086 25 H 0.099 0.901 26 H 0.098 0.902 27 H 0.056 0.944 28 H 0.254 0.746 29 H 0.123 0.877 30 H 0.125 0.875 31 H 0.001 0.999 32 H -0.001 1.001 33 H 0.070 0.930 34 H 0.170 0.830 35 H 0.187 0.813 36 H 0.171 0.829 37 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -2.638 -12.718 22.075 25.613 hybrid contribution 0.175 0.108 -1.257 1.273 sum -2.463 -12.611 20.818 24.464 Atomic orbital electron populations 1.22129 0.93430 1.03494 1.02122 1.19719 0.94840 0.96076 0.81824 0.91083 1.46028 1.67769 1.14605 1.08317 1.21301 0.76030 0.86836 0.85603 1.90664 1.51511 1.18722 1.85748 1.21640 1.03267 0.99755 0.91261 1.18696 0.94752 0.93750 0.92491 1.21738 1.43702 0.97338 0.95067 0.90456 1.26138 0.95747 0.95548 1.03138 1.70179 1.49829 1.10332 1.27573 0.85340 0.78633 0.78280 0.78109 1.19711 1.21442 1.17797 1.19642 1.00858 0.94816 0.94230 1.21524 0.95794 0.92740 0.99492 1.21435 0.97304 1.02059 0.91497 1.21522 0.95911 0.90662 1.00117 1.15978 1.06411 0.92941 0.89044 1.26012 0.92332 0.92553 0.92701 1.81287 1.11012 1.09767 1.12381 1.21037 0.95642 1.00582 0.91331 0.90145 0.90193 0.94370 0.74566 0.87746 0.87461 0.99950 1.00101 0.92953 0.83022 0.81318 0.82852 0.85145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.95 9.46 71.98 0.68 -2.27 16 2 C 0.18 3.73 2.77 44.25 0.12 3.85 16 3 H 0.07 1.88 7.43 -2.39 -0.02 1.86 16 4 N -0.71 -16.37 5.02 -446.10 -2.24 -18.61 16 5 C 0.51 18.39 7.79 87.66 0.68 19.07 16 6 O -0.59 -27.50 15.65 -3.03 -0.05 -27.55 16 7 C -0.12 -4.50 5.64 29.85 0.17 -4.33 16 8 C 0.04 2.22 4.26 29.85 0.13 2.34 16 9 C -0.54 -30.15 9.11 25.60 0.23 -29.91 16 10 H 0.08 3.88 7.74 -2.91 -0.02 3.86 16 11 C -0.01 -0.49 5.46 84.65 0.46 -0.03 16 12 N -0.94 -59.29 13.29 21.45 0.28 -59.01 16 13 Si 0.97 43.69 29.54 68.60 2.03 45.72 16 14 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 15 H -0.29 -12.95 7.11 99.48 0.71 -12.24 16 16 H -0.25 -10.53 7.11 99.48 0.71 -9.83 16 17 C -0.09 -1.34 4.95 -19.91 -0.10 -1.44 16 18 C -0.08 -0.66 9.05 22.33 0.20 -0.46 16 19 C -0.11 -0.59 10.03 22.23 0.22 -0.36 16 20 C -0.06 -0.50 9.76 22.54 0.22 -0.28 16 21 C -0.04 -0.54 5.73 -21.36 -0.12 -0.67 16 22 C 0.28 5.20 15.33 88.33 1.35 6.56 16 23 N -0.47 -11.39 18.54 19.00 0.35 -11.04 16 24 C -0.06 -0.96 9.37 22.54 0.21 -0.75 16 25 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 26 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 27 H 0.04 0.99 8.14 -2.38 -0.02 0.97 16 28 H 0.42 6.22 6.86 -92.71 -0.64 5.59 16 29 H 0.10 3.42 8.14 -2.39 -0.02 3.40 16 30 H 0.11 3.45 8.14 -2.39 -0.02 3.43 16 31 H -0.02 -1.11 8.10 -2.38 -0.02 -1.13 16 32 H -0.02 -1.21 8.10 -2.39 -0.02 -1.23 16 33 H 0.26 15.51 8.31 -92.71 -0.77 14.74 16 34 H 0.15 0.70 6.90 -2.91 -0.02 0.68 16 35 H 0.17 -0.08 8.06 -2.91 -0.02 -0.10 16 36 H 0.15 0.62 8.06 -2.91 -0.02 0.59 16 37 H 0.13 1.98 8.03 -2.91 -0.02 1.95 16 Total: -1.00 -80.51 330.37 5.29 -75.22 By element: Atomic # 1 Polarization: 3.48 SS G_CDS: 0.45 Total: 3.93 kcal Atomic # 6 Polarization: -13.13 SS G_CDS: 4.47 Total: -8.67 kcal Atomic # 7 Polarization: -87.06 SS G_CDS: -1.60 Total: -88.66 kcal Atomic # 8 Polarization: -27.50 SS G_CDS: -0.05 Total: -27.55 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.72 kcal Total: -80.51 5.29 -75.22 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589706818.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.264 kcal (2) G-P(sol) polarization free energy of solvation -80.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds