Wall clock time and date at job start Mon Mar 30 2020 01:27:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.47157 * 2 1 4 4 O 1.42900 * 109.47238 * 119.99578 * 2 1 3 5 5 C 1.35622 * 116.99731 * 85.11074 * 4 2 1 6 6 C 1.39138 * 119.87951 * 354.60399 * 5 4 2 7 7 C 1.36427 * 120.43529 * 180.02562 * 6 5 4 8 8 C 1.40912 * 120.18151 * 359.75232 * 7 6 5 9 9 C 1.41233 * 120.12100 * 180.28071 * 8 7 6 10 10 H 1.08002 * 120.00194 * 28.57283 * 9 8 7 11 11 C 1.39859 * 119.99964 * 208.57658 * 9 8 7 12 12 N 1.30894 * 119.99934 * 13.17573 * 11 9 8 13 13 Si 1.86793 * 120.00203 * 193.18064 * 11 9 8 14 14 H 1.48502 * 109.47328 * 359.97438 * 13 11 9 15 15 H 1.48506 * 109.47638 * 119.99764 * 13 11 9 16 16 H 1.48497 * 109.47440 * 239.99627 * 13 11 9 17 17 C 1.40629 * 119.75649 * 0.50228 * 8 7 6 18 18 C 1.38564 * 119.57314 * 359.49759 * 17 8 7 19 19 C 1.48378 * 120.09042 * 180.23394 * 18 17 8 20 20 C 1.40865 * 126.04448 * 359.97438 * 19 18 17 21 21 C 1.35083 * 107.84935 * 180.02562 * 20 19 18 22 22 N 1.35044 * 107.98221 * 0.02562 * 21 20 19 23 23 H 0.96996 * 125.92844 * 180.02562 * 22 21 20 24 24 N 1.31642 * 126.03732 * 179.69482 * 19 18 17 25 25 H 1.08994 * 109.47145 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46458 * 299.99955 * 1 2 3 27 27 H 1.08997 * 109.47085 * 60.00200 * 1 2 3 28 28 H 1.08996 * 109.47329 * 240.00122 * 2 1 3 29 29 H 1.08999 * 109.47317 * 180.02562 * 3 2 1 30 30 H 1.08997 * 109.46959 * 299.99876 * 3 2 1 31 31 H 1.08999 * 109.47590 * 60.00116 * 3 2 1 32 32 H 1.07997 * 119.78560 * 0.05134 * 6 5 4 33 33 H 1.07998 * 119.91003 * 180.02562 * 7 6 5 34 34 H 0.96998 * 120.00489 * 180.02562 * 12 11 9 35 35 H 1.07994 * 120.21258 * 179.77658 * 17 8 7 36 36 H 1.07999 * 126.06949 * 359.97438 * 20 19 18 37 37 H 1.07998 * 126.00706 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6735 1.1668 5 6 2.1145 -2.0237 1.0973 6 6 1.6626 -2.6980 -0.0328 7 6 1.7653 -4.0559 -0.1145 8 6 2.3361 -4.7882 0.9455 9 6 2.4473 -6.1934 0.8570 10 1 2.5464 -6.6676 -0.1082 11 6 2.4288 -6.9709 2.0195 12 7 2.0543 -6.4402 3.1559 13 14 2.9386 -8.7666 1.9503 14 1 3.3151 -9.1210 0.5583 15 1 4.1002 -8.9864 2.8490 16 1 1.8053 -9.6202 2.3887 17 6 2.7905 -4.1152 2.0937 18 6 2.6813 -2.7358 2.1659 19 6 3.1617 -2.0136 3.3697 20 6 3.7471 -2.5994 4.5092 21 6 4.0447 -1.6084 5.3777 22 7 3.6664 -0.4380 4.8203 23 1 3.7606 0.4401 5.2213 24 7 3.1209 -0.7115 3.5595 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3632 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 3.1300 1.4426 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6768 1.9564 0.8900 32 1 1.2281 -2.1427 -0.8508 33 1 1.4122 -4.5706 -0.9958 34 1 2.0418 -6.9792 3.9622 35 1 3.2259 -4.6695 2.9119 36 1 3.9254 -3.6536 4.6617 37 1 4.5036 -1.7308 6.3476 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592989724.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:25 Heat of formation + Delta-G solvation = 50.136276 kcal Electronic energy + Delta-G solvation = -20600.654763 eV Core-core repulsion = 17537.552112 eV Total energy + Delta-G solvation = -3063.102650 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.37276 -38.88694 -36.56705 -33.56836 -32.36657 -31.69448 -29.38124 -28.95865 -28.55031 -26.91752 -24.84145 -22.32744 -22.10251 -20.59743 -19.80264 -18.87337 -17.58889 -16.98286 -16.86058 -15.12974 -14.72847 -14.62364 -13.95362 -13.87311 -13.48534 -13.42368 -12.88550 -12.66367 -12.55862 -12.12982 -12.02425 -11.86886 -11.69108 -11.53226 -11.22015 -11.10731 -10.79686 -10.56648 -10.35236 -10.01021 -9.81824 -9.72333 -9.37843 -9.32199 -8.90904 -8.16530 -7.28678 -6.85340 -6.60742 -4.21838 2.21451 2.74135 2.86818 3.13599 3.18312 3.19762 3.48833 3.89151 4.01703 4.23982 4.74905 5.24192 5.27329 5.37252 5.47186 5.54089 5.68527 5.80186 5.90238 6.00726 6.05779 6.13514 6.19303 6.35373 6.40705 6.52131 6.56510 6.66504 6.99281 7.12065 7.22936 7.24739 7.43375 7.53105 7.75666 7.84508 8.00683 8.20599 8.44086 8.54034 8.70188 8.94834 9.00251 10.32520 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.016496 B = 0.006576 C = 0.004869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1696.993820 B = 4257.120977 C = 5748.872779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.078 3.922 3 C -0.141 4.141 4 O -0.294 6.294 5 C 0.039 3.961 6 C -0.183 4.183 7 C -0.173 4.173 8 C 0.079 3.921 9 C -0.465 4.465 10 H 0.076 0.924 11 C 0.074 3.926 12 N -0.807 5.807 13 Si 0.906 3.094 14 H -0.263 1.263 15 H -0.273 1.273 16 H -0.277 1.277 17 C -0.094 4.094 18 C -0.043 4.043 19 C 0.145 3.855 20 C -0.253 4.253 21 C 0.034 3.966 22 N -0.498 5.498 23 H 0.429 0.571 24 N -0.271 5.271 25 H 0.064 0.936 26 H 0.059 0.941 27 H 0.057 0.943 28 H 0.063 0.937 29 H 0.059 0.941 30 H 0.063 0.937 31 H 0.060 0.940 32 H 0.102 0.898 33 H 0.097 0.903 34 H 0.278 0.722 35 H 0.134 0.866 36 H 0.147 0.853 37 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.731 8.583 1.121 8.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.021 3.979 3 C -0.199 4.199 4 O -0.209 6.209 5 C -0.006 4.006 6 C -0.202 4.202 7 C -0.193 4.193 8 C 0.077 3.923 9 C -0.496 4.496 10 H 0.094 0.906 11 C -0.142 4.142 12 N -0.434 5.434 13 Si 0.731 3.269 14 H -0.186 1.186 15 H -0.199 1.199 16 H -0.202 1.202 17 C -0.115 4.115 18 C -0.046 4.046 19 C -0.020 4.020 20 C -0.282 4.282 21 C -0.111 4.111 22 N -0.206 5.206 23 H 0.271 0.729 24 N -0.094 5.094 25 H 0.083 0.917 26 H 0.078 0.922 27 H 0.076 0.924 28 H 0.081 0.919 29 H 0.078 0.922 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.119 0.881 33 H 0.115 0.885 34 H 0.089 0.911 35 H 0.151 0.849 36 H 0.165 0.835 37 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 1.413 9.768 1.074 9.928 hybrid contribution 0.289 -1.316 0.530 1.448 sum 1.702 8.452 1.604 8.770 Atomic orbital electron populations 1.22343 0.96434 1.02893 1.01634 1.22110 0.93472 0.93106 0.89235 1.21762 1.01651 0.94696 1.01755 1.86128 1.81898 1.17091 1.35759 1.18619 1.04936 0.81532 0.95549 1.20422 1.06915 0.95544 0.97292 1.20733 1.05055 0.92772 1.00780 1.17472 0.90436 0.93533 0.90879 1.19401 1.45392 0.91109 0.93653 0.90573 1.25805 0.92694 1.00681 0.94979 1.69812 1.35258 1.38065 1.00278 0.86295 0.78896 0.82262 0.79416 1.18638 1.19875 1.20209 1.21287 1.00540 0.89449 1.00233 1.17088 1.05238 0.92230 0.90056 1.20929 0.96436 0.90093 0.94570 1.21614 1.10873 1.00369 0.95339 1.22327 1.02539 0.86565 0.99691 1.46435 1.51053 1.07872 1.15200 0.72856 1.77848 1.20060 1.15862 0.95664 0.91724 0.92182 0.92357 0.91917 0.92223 0.91795 0.92054 0.88053 0.88494 0.91110 0.84878 0.83523 0.81648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.67 9.17 37.16 0.34 -2.33 16 2 C 0.08 1.32 2.84 -26.73 -0.08 1.24 16 3 C -0.14 -1.96 9.56 37.16 0.36 -1.60 16 4 O -0.29 -6.29 8.09 -18.56 -0.15 -6.44 16 5 C 0.04 0.92 6.63 -38.45 -0.25 0.67 16 6 C -0.18 -4.10 8.16 -39.90 -0.33 -4.43 16 7 C -0.17 -4.16 9.72 -39.22 -0.38 -4.55 16 8 C 0.08 2.07 5.54 -106.85 -0.59 1.48 16 9 C -0.46 -12.11 9.04 -37.84 -0.34 -12.45 16 10 H 0.08 1.91 7.88 -52.49 -0.41 1.50 16 11 C 0.07 1.83 5.20 -17.34 -0.09 1.74 16 12 N -0.81 -20.61 10.94 55.54 0.61 -20.01 16 13 Si 0.91 18.60 29.58 -169.99 -5.03 13.58 16 14 H -0.26 -5.35 7.11 56.52 0.40 -4.95 16 15 H -0.27 -5.52 7.11 56.52 0.40 -5.11 16 16 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 17 C -0.09 -2.42 8.17 -38.56 -0.32 -2.73 16 18 C -0.04 -1.07 5.88 -104.80 -0.62 -1.68 16 19 C 0.14 3.27 6.97 -82.78 -0.58 2.70 16 20 C -0.25 -4.94 10.17 -39.71 -0.40 -5.35 16 21 C 0.03 0.53 11.97 -17.26 -0.21 0.32 16 22 N -0.50 -7.98 7.35 30.42 0.22 -7.75 16 23 H 0.43 5.05 8.96 -182.62 -1.64 3.41 16 24 N -0.27 -5.71 11.18 33.42 0.37 -5.34 16 25 H 0.06 1.08 6.92 -51.93 -0.36 0.72 16 26 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 27 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 28 H 0.06 1.05 6.28 -51.93 -0.33 0.72 16 29 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 31 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.10 1.98 5.39 -52.49 -0.28 1.70 16 33 H 0.10 2.16 8.06 -52.49 -0.42 1.74 16 34 H 0.28 6.49 8.30 -40.82 -0.34 6.15 16 35 H 0.13 3.47 5.24 -52.49 -0.28 3.20 16 36 H 0.15 2.82 7.33 -52.49 -0.38 2.44 16 37 H 0.17 1.76 8.06 -52.49 -0.42 1.34 16 LS Contribution 310.63 15.07 4.68 4.68 Total: -1.00 -30.16 310.63 -8.55 -38.71 By element: Atomic # 1 Polarization: 15.32 SS G_CDS: -5.77 Total: 9.54 kcal Atomic # 6 Polarization: -23.49 SS G_CDS: -3.49 Total: -26.97 kcal Atomic # 7 Polarization: -34.30 SS G_CDS: 1.20 Total: -33.10 kcal Atomic # 8 Polarization: -6.29 SS G_CDS: -0.15 Total: -6.44 kcal Atomic # 14 Polarization: 18.60 SS G_CDS: -5.03 Total: 13.58 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -30.16 -8.55 -38.71 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592989724.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.850 kcal (2) G-P(sol) polarization free energy of solvation -30.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.714 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds