Wall clock time and date at job start Mon Mar 30 2020 01:27:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.47157 * 2 1 4 4 O 1.42900 * 109.47238 * 119.99578 * 2 1 3 5 5 C 1.35622 * 116.99731 * 85.11074 * 4 2 1 6 6 C 1.39138 * 119.87951 * 354.60399 * 5 4 2 7 7 C 1.36427 * 120.43529 * 180.02562 * 6 5 4 8 8 C 1.40912 * 120.18151 * 359.75232 * 7 6 5 9 9 C 1.41233 * 120.12100 * 180.28071 * 8 7 6 10 10 H 1.08002 * 120.00194 * 28.57283 * 9 8 7 11 11 C 1.39859 * 119.99964 * 208.57658 * 9 8 7 12 12 N 1.30894 * 119.99934 * 13.17573 * 11 9 8 13 13 Si 1.86793 * 120.00203 * 193.18064 * 11 9 8 14 14 H 1.48502 * 109.47328 * 359.97438 * 13 11 9 15 15 H 1.48506 * 109.47638 * 119.99764 * 13 11 9 16 16 H 1.48497 * 109.47440 * 239.99627 * 13 11 9 17 17 C 1.40629 * 119.75649 * 0.50228 * 8 7 6 18 18 C 1.38564 * 119.57314 * 359.49759 * 17 8 7 19 19 C 1.48378 * 120.09042 * 180.23394 * 18 17 8 20 20 C 1.40865 * 126.04448 * 359.97438 * 19 18 17 21 21 C 1.35083 * 107.84935 * 180.02562 * 20 19 18 22 22 N 1.35044 * 107.98221 * 0.02562 * 21 20 19 23 23 H 0.96996 * 125.92844 * 180.02562 * 22 21 20 24 24 N 1.31642 * 126.03732 * 179.69482 * 19 18 17 25 25 H 1.08994 * 109.47145 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46458 * 299.99955 * 1 2 3 27 27 H 1.08997 * 109.47085 * 60.00200 * 1 2 3 28 28 H 1.08996 * 109.47329 * 240.00122 * 2 1 3 29 29 H 1.08999 * 109.47317 * 180.02562 * 3 2 1 30 30 H 1.08997 * 109.46959 * 299.99876 * 3 2 1 31 31 H 1.08999 * 109.47590 * 60.00116 * 3 2 1 32 32 H 1.07997 * 119.78560 * 0.05134 * 6 5 4 33 33 H 1.07998 * 119.91003 * 180.02562 * 7 6 5 34 34 H 0.96998 * 120.00489 * 180.02562 * 12 11 9 35 35 H 1.07994 * 120.21258 * 179.77658 * 17 8 7 36 36 H 1.07999 * 126.06949 * 359.97438 * 20 19 18 37 37 H 1.07998 * 126.00706 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6735 1.1668 5 6 2.1145 -2.0237 1.0973 6 6 1.6626 -2.6980 -0.0328 7 6 1.7653 -4.0559 -0.1145 8 6 2.3361 -4.7882 0.9455 9 6 2.4473 -6.1934 0.8570 10 1 2.5464 -6.6676 -0.1082 11 6 2.4288 -6.9709 2.0195 12 7 2.0543 -6.4402 3.1559 13 14 2.9386 -8.7666 1.9503 14 1 3.3151 -9.1210 0.5583 15 1 4.1002 -8.9864 2.8490 16 1 1.8053 -9.6202 2.3887 17 6 2.7905 -4.1152 2.0937 18 6 2.6813 -2.7358 2.1659 19 6 3.1617 -2.0136 3.3697 20 6 3.7471 -2.5994 4.5092 21 6 4.0447 -1.6084 5.3777 22 7 3.6664 -0.4380 4.8203 23 1 3.7606 0.4401 5.2213 24 7 3.1209 -0.7115 3.5595 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3632 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 3.1300 1.4426 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6768 1.9564 0.8900 32 1 1.2281 -2.1427 -0.8508 33 1 1.4122 -4.5706 -0.9958 34 1 2.0418 -6.9792 3.9622 35 1 3.2259 -4.6695 2.9119 36 1 3.9254 -3.6536 4.6617 37 1 4.5036 -1.7308 6.3476 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592989724.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:25 Heat of formation + Delta-G solvation = 32.456002 kcal Electronic energy + Delta-G solvation = -20601.421437 eV Core-core repulsion = 17537.552112 eV Total energy + Delta-G solvation = -3063.869325 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.85238 -40.52612 -38.29843 -35.33520 -33.92944 -33.20934 -30.97898 -30.66701 -30.22100 -28.11022 -26.68807 -24.03339 -23.71019 -21.97748 -21.45742 -20.51724 -19.01894 -18.73708 -18.49793 -16.90618 -16.34713 -16.09288 -15.62540 -15.37673 -15.07687 -14.89507 -14.37672 -14.28101 -14.11959 -13.53916 -13.45678 -13.36580 -13.14014 -13.06376 -12.76070 -12.66032 -12.41023 -12.25431 -11.84993 -11.61653 -11.46585 -11.39519 -11.07017 -10.97243 -10.66622 -9.61703 -9.09207 -8.68055 -8.43970 -6.16716 0.48902 1.05702 1.29463 1.44636 1.52742 1.58684 2.19105 2.20930 2.29778 2.74432 2.89742 3.75891 3.86585 3.99981 4.07470 4.13791 4.25634 4.41079 4.48973 4.71459 4.77611 4.86899 4.89307 4.93997 4.98886 5.04298 5.15775 5.26667 5.30825 5.34856 5.37698 5.56619 5.63362 5.77460 5.92204 6.10261 6.30845 6.63313 6.67902 6.90750 6.92607 7.03266 7.17512 8.49397 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.016496 B = 0.006576 C = 0.004869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1696.993820 B = 4257.120977 C = 5748.872779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.063 3.937 3 C -0.134 4.134 4 O -0.307 6.307 5 C 0.038 3.962 6 C -0.180 4.180 7 C -0.185 4.185 8 C 0.047 3.953 9 C -0.499 4.499 10 H 0.075 0.925 11 C 0.034 3.966 12 N -0.838 5.838 13 Si 0.980 3.020 14 H -0.260 1.260 15 H -0.266 1.266 16 H -0.270 1.270 17 C -0.111 4.111 18 C -0.062 4.062 19 C 0.111 3.889 20 C -0.292 4.292 21 C 0.076 3.924 22 N -0.477 5.477 23 H 0.451 0.549 24 N -0.297 5.297 25 H 0.043 0.957 26 H 0.056 0.944 27 H 0.093 0.907 28 H 0.064 0.936 29 H 0.052 0.948 30 H 0.098 0.902 31 H 0.059 0.941 32 H 0.131 0.869 33 H 0.108 0.892 34 H 0.285 0.715 35 H 0.120 0.880 36 H 0.137 0.863 37 H 0.225 0.775 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.050 9.951 1.668 10.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.006 3.994 3 C -0.191 4.191 4 O -0.222 6.222 5 C -0.008 4.008 6 C -0.198 4.198 7 C -0.205 4.205 8 C 0.045 3.955 9 C -0.529 4.529 10 H 0.093 0.907 11 C -0.179 4.179 12 N -0.465 5.465 13 Si 0.801 3.199 14 H -0.184 1.184 15 H -0.190 1.190 16 H -0.195 1.195 17 C -0.133 4.133 18 C -0.065 4.065 19 C -0.052 4.052 20 C -0.321 4.321 21 C -0.072 4.072 22 N -0.187 5.187 23 H 0.297 0.703 24 N -0.122 5.122 25 H 0.062 0.938 26 H 0.075 0.925 27 H 0.112 0.888 28 H 0.082 0.918 29 H 0.071 0.929 30 H 0.117 0.883 31 H 0.078 0.922 32 H 0.148 0.852 33 H 0.127 0.873 34 H 0.095 0.905 35 H 0.138 0.862 36 H 0.155 0.845 37 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 1.722 11.182 1.607 11.428 hybrid contribution 0.183 -1.500 0.411 1.566 sum 1.905 9.682 2.018 10.072 Atomic orbital electron populations 1.22297 0.95066 1.02056 1.03262 1.22555 0.94684 0.94355 0.87757 1.21755 1.01238 0.92665 1.03399 1.86120 1.82043 1.15820 1.38190 1.18790 1.03960 0.82767 0.95281 1.20677 1.06164 0.95098 0.97878 1.20945 1.05176 0.93633 1.00770 1.17834 0.91454 0.94269 0.91903 1.19627 1.47389 0.91590 0.94314 0.90704 1.26622 0.92028 1.05027 0.94206 1.69887 1.35764 1.39896 1.00997 0.85193 0.78663 0.76555 0.79457 1.18381 1.19034 1.19499 1.21177 1.01843 0.90165 1.00095 1.17423 1.05139 0.92307 0.91627 1.20906 0.98259 0.91025 0.95053 1.21724 1.13250 1.01143 0.96027 1.22994 0.99184 0.84649 1.00328 1.46443 1.49151 1.09391 1.13717 0.70269 1.77714 1.21221 1.15132 0.98150 0.93756 0.92473 0.88799 0.91822 0.92877 0.88289 0.92203 0.85184 0.87347 0.90475 0.86245 0.84471 0.75854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.85 9.17 71.98 0.66 -4.19 16 2 C 0.06 2.03 2.84 30.60 0.09 2.12 16 3 C -0.13 -3.38 9.56 71.98 0.69 -2.69 16 4 O -0.31 -13.15 8.09 -89.34 -0.72 -13.87 16 5 C 0.04 1.84 6.63 23.01 0.15 1.99 16 6 C -0.18 -8.19 8.16 22.06 0.18 -8.01 16 7 C -0.19 -9.21 9.72 22.50 0.22 -8.99 16 8 C 0.05 2.61 5.54 -21.30 -0.12 2.49 16 9 C -0.50 -27.13 9.04 23.40 0.21 -26.92 16 10 H 0.07 3.92 7.88 -2.91 -0.02 3.90 16 11 C 0.03 1.72 5.20 85.22 0.44 2.17 16 12 N -0.84 -44.45 10.94 21.81 0.24 -44.22 16 13 Si 0.98 38.86 29.58 68.60 2.03 40.89 16 14 H -0.26 -10.10 7.11 99.48 0.71 -9.39 16 15 H -0.27 -10.10 7.11 99.48 0.71 -9.40 16 16 H -0.27 -10.34 7.11 99.48 0.71 -9.63 16 17 C -0.11 -6.08 8.17 22.93 0.19 -5.90 16 18 C -0.06 -3.20 5.88 -19.98 -0.12 -3.32 16 19 C 0.11 5.15 6.97 42.52 0.30 5.45 16 20 C -0.29 -11.49 10.17 22.19 0.23 -11.27 16 21 C 0.08 2.12 11.97 83.47 1.00 3.12 16 22 N -0.48 -14.09 7.35 -57.67 -0.42 -14.51 16 23 H 0.45 9.05 8.96 -213.34 -1.91 7.14 16 24 N -0.30 -12.41 11.18 -48.17 -0.54 -12.95 16 25 H 0.04 1.44 6.92 -2.39 -0.02 1.42 16 26 H 0.06 1.65 8.14 -2.39 -0.02 1.64 16 27 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 28 H 0.06 2.04 6.28 -2.39 -0.01 2.02 16 29 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.10 1.81 8.14 -2.39 -0.02 1.80 16 31 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.13 5.02 5.39 -2.91 -0.02 5.00 16 33 H 0.11 4.97 8.06 -2.91 -0.02 4.95 16 34 H 0.28 13.69 8.30 -92.71 -0.77 12.92 16 35 H 0.12 6.69 5.24 -2.91 -0.02 6.68 16 36 H 0.14 5.53 7.33 -2.91 -0.02 5.50 16 37 H 0.23 3.55 8.06 -2.91 -0.02 3.52 16 Total: -1.00 -69.55 310.63 3.89 -65.66 By element: Atomic # 1 Polarization: 33.76 SS G_CDS: -0.81 Total: 32.95 kcal Atomic # 6 Polarization: -58.07 SS G_CDS: 4.11 Total: -53.96 kcal Atomic # 7 Polarization: -70.95 SS G_CDS: -0.72 Total: -71.67 kcal Atomic # 8 Polarization: -13.15 SS G_CDS: -0.72 Total: -13.87 kcal Atomic # 14 Polarization: 38.86 SS G_CDS: 2.03 Total: 40.89 kcal Total: -69.55 3.89 -65.66 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592989724.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.117 kcal (2) G-P(sol) polarization free energy of solvation -69.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.661 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds