Wall clock time and date at job start Mon Mar 30 2020 01:07:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50698 * 120.00199 * 2 1 4 4 N 1.46900 * 109.47318 * 124.14338 * 3 2 1 5 5 C 1.46907 * 110.99839 * 300.27217 * 4 3 2 6 6 C 1.50693 * 109.47128 * 288.16314 * 5 4 3 7 7 H 1.08006 * 120.00139 * 354.74441 * 6 5 4 8 8 C 1.37873 * 120.00134 * 174.74677 * 6 5 4 9 9 N 1.31515 * 119.99935 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 120.00318 * 180.02562 * 8 6 5 11 11 H 1.48494 * 109.47477 * 89.99668 * 10 8 6 12 12 H 1.48502 * 109.47242 * 209.99648 * 10 8 6 13 13 H 1.48503 * 109.46964 * 329.99383 * 10 8 6 14 14 C 1.46905 * 110.99963 * 64.22223 * 4 3 2 15 15 C 1.50701 * 109.46678 * 66.04739 * 14 4 3 16 16 C 1.34037 * 124.91171 * 90.00524 * 15 14 4 17 17 C 1.46624 * 106.17790 * 179.70367 * 16 15 14 18 18 C 1.39146 * 135.26056 * 180.24242 * 17 16 15 19 19 N 1.31758 * 120.09639 * 179.97438 * 18 17 16 20 20 C 1.32246 * 122.11572 * 0.03819 * 19 18 17 21 21 C 1.37799 * 121.51574 * 359.97438 * 20 19 18 22 22 C 1.39158 * 118.91963 * 359.97438 * 21 20 19 23 23 O 1.34375 * 134.63800 * 180.02562 * 22 21 20 24 24 H 1.08008 * 119.99640 * 0.02562 * 1 2 3 25 25 H 1.07995 * 120.00019 * 179.97438 * 1 2 3 26 26 H 1.08000 * 120.00043 * 180.02562 * 2 1 3 27 27 H 1.09000 * 109.47236 * 4.14661 * 3 2 1 28 28 H 1.09000 * 109.47630 * 244.14816 * 3 2 1 29 29 H 1.08997 * 109.47320 * 48.16983 * 5 4 3 30 30 H 1.09001 * 109.46686 * 168.16560 * 5 4 3 31 31 H 0.97006 * 120.00483 * 179.97438 * 9 8 6 32 32 H 1.08999 * 109.46876 * 306.05252 * 14 4 3 33 33 H 1.08996 * 109.47361 * 186.04762 * 14 4 3 34 34 H 1.08002 * 126.90693 * 359.96018 * 16 15 14 35 35 H 1.08001 * 119.94787 * 359.97438 * 18 17 16 36 36 H 1.08002 * 119.24444 * 179.97438 * 20 19 18 37 37 H 1.08008 * 120.54143 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9816 1.3405 1.1463 5 6 2.2477 1.2142 2.4126 6 6 1.4883 2.4875 2.6822 7 1 1.6114 3.3384 2.0285 8 6 0.6365 2.5664 3.7635 9 7 0.4863 1.5302 4.5593 10 14 -0.3054 4.1447 4.0974 11 1 -1.6096 4.1022 3.3886 12 1 -0.5397 4.2819 5.5574 13 1 0.4845 5.3047 3.6117 14 6 4.0112 0.2993 1.0284 15 6 4.8988 0.6019 -0.1513 16 6 6.0162 1.3404 -0.1011 17 6 6.5527 1.3628 -1.4655 18 6 7.6628 1.9321 -2.0818 19 7 7.8651 1.7561 -3.3718 20 6 7.0394 1.0465 -4.1225 21 6 5.9167 0.4491 -3.5919 22 6 5.6523 0.5998 -2.2340 23 8 4.6835 0.1710 -1.4075 24 1 -0.5400 0.9354 -0.0004 25 1 -0.5400 -0.9353 -0.0004 26 1 1.8500 -0.9353 -0.0004 27 1 1.3576 2.1322 0.0743 28 1 2.6333 1.3957 -0.9248 29 1 1.5481 0.3811 2.3456 30 1 2.9523 1.0325 3.2242 31 1 -0.1127 1.5857 5.3203 32 1 3.5333 -0.6697 0.8844 33 1 4.6111 0.2769 1.9382 34 1 6.4388 1.8189 0.7701 35 1 8.3596 2.5190 -1.5018 36 1 7.2498 0.9325 -5.1757 37 1 5.2532 -0.1274 -4.2195 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593630350.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:45 Heat of formation + Delta-G solvation = 68.901712 kcal Electronic energy + Delta-G solvation = -20174.429202 eV Core-core repulsion = 17112.140282 eV Total energy + Delta-G solvation = -3062.288920 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.61526 -39.04391 -37.44473 -33.24267 -32.86910 -32.24016 -31.62771 -30.13182 -27.42321 -26.38229 -24.42206 -23.49447 -22.35280 -21.31605 -20.90447 -19.03710 -17.87720 -16.73822 -16.41495 -16.15031 -15.92013 -15.23415 -14.71531 -14.55048 -14.32487 -14.19724 -13.83502 -13.38263 -13.26778 -12.92535 -12.26135 -12.15823 -11.89020 -11.31554 -11.29684 -11.02604 -10.78808 -10.75021 -10.53639 -10.24582 -10.01355 -9.78217 -9.38226 -9.35091 -8.78881 -8.47152 -8.21665 -7.43995 -6.07072 -4.08339 0.69643 1.23856 2.35290 2.61064 2.84447 3.28824 3.35648 3.39876 3.71437 4.26163 4.36938 4.40493 4.59341 4.88497 4.98914 5.05608 5.18774 5.28916 5.44604 5.47274 5.50445 5.65620 5.71994 5.81639 5.87535 5.98999 6.07153 6.36464 6.38943 6.42165 6.58331 7.04322 7.11304 7.14586 7.23598 7.34805 7.71840 7.84931 7.92584 8.05663 8.41633 8.98913 9.55865 11.03423 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.027366 B = 0.004218 C = 0.003969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.906199 B = 6635.997367 C = 7053.168697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.182 4.182 3 C 0.089 3.911 4 N -0.524 5.524 5 C 0.190 3.810 6 C -0.504 4.504 7 H 0.063 0.937 8 C 0.058 3.942 9 N -0.898 5.898 10 Si 0.896 3.104 11 H -0.281 1.281 12 H -0.287 1.287 13 H -0.273 1.273 14 C 0.119 3.881 15 C 0.064 3.936 16 C -0.186 4.186 17 C -0.178 4.178 18 C 0.156 3.844 19 N -0.496 5.496 20 C 0.099 3.901 21 C -0.157 4.157 22 C 0.083 3.917 23 O -0.186 6.186 24 H 0.098 0.902 25 H 0.086 0.914 26 H 0.096 0.904 27 H 0.087 0.913 28 H 0.060 0.940 29 H 0.011 0.989 30 H 0.026 0.974 31 H 0.261 0.739 32 H 0.050 0.950 33 H 0.106 0.894 34 H 0.165 0.835 35 H 0.161 0.839 36 H 0.164 0.836 37 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.489 -3.657 -12.634 16.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.201 4.201 3 C -0.039 4.039 4 N -0.247 5.247 5 C 0.066 3.934 6 C -0.543 4.543 7 H 0.081 0.919 8 C -0.144 4.144 9 N -0.537 5.537 10 Si 0.724 3.276 11 H -0.207 1.207 12 H -0.213 1.213 13 H -0.198 1.198 14 C -0.009 4.009 15 C 0.016 3.984 16 C -0.207 4.207 17 C -0.181 4.181 18 C -0.007 4.007 19 N -0.207 5.207 20 C -0.052 4.052 21 C -0.178 4.178 22 C 0.028 3.972 23 O -0.086 6.086 24 H 0.116 0.884 25 H 0.104 0.896 26 H 0.114 0.886 27 H 0.106 0.894 28 H 0.078 0.922 29 H 0.029 0.971 30 H 0.044 0.956 31 H 0.071 0.929 32 H 0.068 0.932 33 H 0.124 0.876 34 H 0.182 0.818 35 H 0.178 0.822 36 H 0.181 0.819 37 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 10.098 -3.066 -12.955 16.710 hybrid contribution -1.746 -0.399 0.773 1.951 sum 8.352 -3.465 -12.182 15.171 Atomic orbital electron populations 1.23710 0.95969 1.01243 1.00317 1.23465 0.96731 0.99550 1.00399 1.21272 0.94719 0.94759 0.93162 1.62551 1.13975 1.43197 1.04966 1.19831 0.92325 0.97685 0.83546 1.21073 1.23888 0.98459 1.10895 0.91910 1.24945 0.96831 0.96509 0.96076 1.69948 1.37868 1.29693 1.16197 0.86532 0.80136 0.83656 0.77325 1.20747 1.21261 1.19756 1.20802 0.93677 0.95552 0.90913 1.22755 0.96345 0.96266 0.83007 1.22159 0.97684 1.04895 0.95978 1.21028 0.98823 1.03085 0.95210 1.22285 0.93519 0.94800 0.90101 1.67739 1.30301 1.16577 1.06046 1.22443 0.89609 0.93156 0.99947 1.20968 1.00922 1.05394 0.90498 1.19777 0.88470 0.96372 0.92613 1.83973 1.43559 1.63234 1.17820 0.88405 0.89551 0.88609 0.89442 0.92165 0.97140 0.95570 0.92913 0.93192 0.87570 0.81793 0.82154 0.81918 0.84196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.05 14.32 29.01 0.42 -2.64 16 2 C -0.18 -3.27 7.42 -36.03 -0.27 -3.54 16 3 C 0.09 1.70 5.49 -4.98 -0.03 1.67 16 4 N -0.52 -10.62 4.65 -238.96 -1.11 -11.73 16 5 C 0.19 4.64 4.58 -4.98 -0.02 4.62 16 6 C -0.50 -13.59 8.53 -34.44 -0.29 -13.88 16 7 H 0.06 1.70 7.66 -52.48 -0.40 1.30 16 8 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 9 N -0.90 -25.80 13.29 55.43 0.74 -25.06 16 10 Si 0.90 21.17 29.54 -169.99 -5.02 16.15 16 11 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 12 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 13 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 14 C 0.12 1.99 5.30 -4.97 -0.03 1.96 16 15 C 0.06 1.00 5.82 -35.79 -0.21 0.79 16 16 C -0.19 -2.68 11.00 -37.68 -0.41 -3.10 16 17 C -0.18 -2.51 6.44 -105.19 -0.68 -3.19 16 18 C 0.16 1.94 11.26 -17.25 -0.19 1.74 16 19 N -0.50 -6.28 10.35 -13.06 -0.14 -6.41 16 20 C 0.10 1.07 11.14 -17.53 -0.20 0.88 16 21 C -0.16 -1.82 10.13 -39.40 -0.40 -2.22 16 22 C 0.08 1.20 7.49 -38.25 -0.29 0.91 16 23 O -0.19 -2.95 9.80 4.87 0.05 -2.90 16 24 H 0.10 1.75 7.84 -52.48 -0.41 1.34 16 25 H 0.09 1.35 8.06 -52.49 -0.42 0.92 16 26 H 0.10 1.63 6.80 -52.49 -0.36 1.27 16 27 H 0.09 1.81 7.04 -51.93 -0.37 1.44 16 28 H 0.06 1.10 6.56 -51.93 -0.34 0.76 16 29 H 0.01 0.28 6.71 -51.93 -0.35 -0.07 16 30 H 0.03 0.67 7.81 -51.93 -0.41 0.27 16 31 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 32 H 0.05 0.82 6.34 -51.93 -0.33 0.49 16 33 H 0.11 1.65 7.86 -51.93 -0.41 1.24 16 34 H 0.16 2.06 8.06 -52.49 -0.42 1.64 16 35 H 0.16 1.55 8.06 -52.49 -0.42 1.13 16 36 H 0.16 1.19 8.06 -52.49 -0.42 0.76 16 37 H 0.14 1.27 8.06 -52.48 -0.42 0.84 16 LS Contribution 316.55 15.07 4.77 4.77 Total: -1.00 -30.01 316.55 -8.02 -38.03 By element: Atomic # 1 Polarization: 6.27 SS G_CDS: -4.62 Total: 1.65 kcal Atomic # 6 Polarization: -11.81 SS G_CDS: -2.69 Total: -14.50 kcal Atomic # 7 Polarization: -42.69 SS G_CDS: -0.51 Total: -43.20 kcal Atomic # 8 Polarization: -2.95 SS G_CDS: 0.05 Total: -2.90 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -30.01 -8.02 -38.03 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593630350.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.934 kcal (2) G-P(sol) polarization free energy of solvation -30.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.032 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds