Wall clock time and date at job start Mon Mar 30 2020 01:07:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50698 * 120.00199 * 2 1 4 4 N 1.46900 * 109.47318 * 124.14338 * 3 2 1 5 5 C 1.46907 * 110.99839 * 300.27217 * 4 3 2 6 6 C 1.50693 * 109.47128 * 288.16314 * 5 4 3 7 7 H 1.08006 * 120.00139 * 354.74441 * 6 5 4 8 8 C 1.37873 * 120.00134 * 174.74677 * 6 5 4 9 9 N 1.31515 * 119.99935 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 120.00318 * 180.02562 * 8 6 5 11 11 H 1.48494 * 109.47477 * 89.99668 * 10 8 6 12 12 H 1.48502 * 109.47242 * 209.99648 * 10 8 6 13 13 H 1.48503 * 109.46964 * 329.99383 * 10 8 6 14 14 C 1.46905 * 110.99963 * 64.22223 * 4 3 2 15 15 C 1.50701 * 109.46678 * 66.04739 * 14 4 3 16 16 C 1.34037 * 124.91171 * 90.00524 * 15 14 4 17 17 C 1.46624 * 106.17790 * 179.70367 * 16 15 14 18 18 C 1.39146 * 135.26056 * 180.24242 * 17 16 15 19 19 N 1.31758 * 120.09639 * 179.97438 * 18 17 16 20 20 C 1.32246 * 122.11572 * 0.03819 * 19 18 17 21 21 C 1.37799 * 121.51574 * 359.97438 * 20 19 18 22 22 C 1.39158 * 118.91963 * 359.97438 * 21 20 19 23 23 O 1.34375 * 134.63800 * 180.02562 * 22 21 20 24 24 H 1.08008 * 119.99640 * 0.02562 * 1 2 3 25 25 H 1.07995 * 120.00019 * 179.97438 * 1 2 3 26 26 H 1.08000 * 120.00043 * 180.02562 * 2 1 3 27 27 H 1.09000 * 109.47236 * 4.14661 * 3 2 1 28 28 H 1.09000 * 109.47630 * 244.14816 * 3 2 1 29 29 H 1.08997 * 109.47320 * 48.16983 * 5 4 3 30 30 H 1.09001 * 109.46686 * 168.16560 * 5 4 3 31 31 H 0.97006 * 120.00483 * 179.97438 * 9 8 6 32 32 H 1.08999 * 109.46876 * 306.05252 * 14 4 3 33 33 H 1.08996 * 109.47361 * 186.04762 * 14 4 3 34 34 H 1.08002 * 126.90693 * 359.96018 * 16 15 14 35 35 H 1.08001 * 119.94787 * 359.97438 * 18 17 16 36 36 H 1.08002 * 119.24444 * 179.97438 * 20 19 18 37 37 H 1.08008 * 120.54143 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9816 1.3405 1.1463 5 6 2.2477 1.2142 2.4126 6 6 1.4883 2.4875 2.6822 7 1 1.6114 3.3384 2.0285 8 6 0.6365 2.5664 3.7635 9 7 0.4863 1.5302 4.5593 10 14 -0.3054 4.1447 4.0974 11 1 -1.6096 4.1022 3.3886 12 1 -0.5397 4.2819 5.5574 13 1 0.4845 5.3047 3.6117 14 6 4.0112 0.2993 1.0284 15 6 4.8988 0.6019 -0.1513 16 6 6.0162 1.3404 -0.1011 17 6 6.5527 1.3628 -1.4655 18 6 7.6628 1.9321 -2.0818 19 7 7.8651 1.7561 -3.3718 20 6 7.0394 1.0465 -4.1225 21 6 5.9167 0.4491 -3.5919 22 6 5.6523 0.5998 -2.2340 23 8 4.6835 0.1710 -1.4075 24 1 -0.5400 0.9354 -0.0004 25 1 -0.5400 -0.9353 -0.0004 26 1 1.8500 -0.9353 -0.0004 27 1 1.3576 2.1322 0.0743 28 1 2.6333 1.3957 -0.9248 29 1 1.5481 0.3811 2.3456 30 1 2.9523 1.0325 3.2242 31 1 -0.1127 1.5857 5.3203 32 1 3.5333 -0.6697 0.8844 33 1 4.6111 0.2769 1.9382 34 1 6.4388 1.8189 0.7701 35 1 8.3596 2.5190 -1.5018 36 1 7.2498 0.9325 -5.1757 37 1 5.2532 -0.1274 -4.2195 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593630350.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:45 Heat of formation + Delta-G solvation = 50.753333 kcal Electronic energy + Delta-G solvation = -20175.216175 eV Core-core repulsion = 17112.140282 eV Total energy + Delta-G solvation = -3063.075893 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -43.68749 -40.04162 -38.98557 -34.85712 -34.45172 -33.56687 -32.63807 -31.40988 -29.15474 -27.76217 -26.01494 -24.64581 -23.48917 -22.78889 -22.18877 -20.51704 -18.87647 -18.41680 -17.69408 -17.56811 -17.03349 -16.72001 -16.29028 -15.98287 -15.55407 -15.39706 -15.22357 -14.52445 -14.37661 -14.13636 -14.04920 -13.70973 -13.17485 -13.06227 -12.71615 -12.62263 -12.40063 -12.32570 -12.21734 -12.02794 -11.38404 -11.21694 -10.72143 -10.58585 -10.40105 -10.23548 -9.29661 -9.06473 -8.16627 -6.24927 -0.27001 0.23348 1.22543 1.41209 1.42437 1.43170 1.53345 1.54636 2.42393 2.77324 3.16729 3.22223 3.41138 3.48291 3.61559 3.94479 4.01471 4.07606 4.10591 4.24229 4.37709 4.43400 4.50213 4.61684 4.74985 4.84302 4.91586 5.00029 5.05566 5.20111 5.29769 5.32037 5.50463 5.65768 5.67948 5.85091 6.00980 6.07449 6.26749 6.52539 6.89341 6.92799 7.43743 8.93382 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.027366 B = 0.004218 C = 0.003969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.906199 B = 6635.997367 C = 7053.168697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.190 4.190 3 C 0.095 3.905 4 N -0.531 5.531 5 C 0.207 3.793 6 C -0.516 4.516 7 H 0.056 0.944 8 C 0.010 3.990 9 N -0.930 5.930 10 Si 0.958 3.042 11 H -0.275 1.275 12 H -0.283 1.283 13 H -0.268 1.268 14 C 0.123 3.877 15 C 0.041 3.959 16 C -0.176 4.176 17 C -0.198 4.198 18 C 0.156 3.844 19 N -0.510 5.510 20 C 0.107 3.893 21 C -0.160 4.160 22 C 0.062 3.938 23 O -0.200 6.200 24 H 0.090 0.910 25 H 0.108 0.892 26 H 0.107 0.893 27 H 0.066 0.934 28 H 0.070 0.930 29 H -0.010 1.010 30 H 0.009 0.991 31 H 0.263 0.737 32 H 0.053 0.947 33 H 0.114 0.886 34 H 0.178 0.822 35 H 0.185 0.815 36 H 0.202 0.798 37 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.225 -3.247 -14.128 17.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.210 4.210 3 C -0.033 4.033 4 N -0.254 5.254 5 C 0.081 3.919 6 C -0.555 4.555 7 H 0.074 0.926 8 C -0.188 4.188 9 N -0.571 5.571 10 Si 0.784 3.216 11 H -0.201 1.201 12 H -0.208 1.208 13 H -0.192 1.192 14 C -0.004 4.004 15 C -0.006 4.006 16 C -0.197 4.197 17 C -0.201 4.201 18 C -0.006 4.006 19 N -0.221 5.221 20 C -0.043 4.043 21 C -0.181 4.181 22 C 0.007 3.993 23 O -0.100 6.100 24 H 0.108 0.892 25 H 0.126 0.874 26 H 0.125 0.875 27 H 0.084 0.916 28 H 0.088 0.912 29 H 0.007 0.993 30 H 0.027 0.973 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.132 0.868 34 H 0.196 0.804 35 H 0.201 0.799 36 H 0.218 0.782 37 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 10.849 -2.655 -14.471 18.280 hybrid contribution -1.873 -0.541 1.105 2.241 sum 8.976 -3.196 -13.366 16.414 Atomic orbital electron populations 1.23874 0.95951 1.01943 0.99446 1.23469 0.96997 0.99365 1.01156 1.21148 0.94387 0.94705 0.93015 1.62392 1.14215 1.45160 1.03626 1.19447 0.91501 0.95878 0.85042 1.21352 1.24203 0.99151 1.10778 0.92568 1.25718 0.97732 0.99509 0.95881 1.70056 1.38687 1.31577 1.16731 0.85547 0.78892 0.79965 0.77219 1.20095 1.20847 1.19249 1.20721 0.92932 0.94548 0.92205 1.22427 0.96996 0.98178 0.83007 1.22419 0.96999 1.03497 0.96822 1.21181 0.99775 1.04184 0.94997 1.22684 0.93244 0.94337 0.90360 1.67841 1.30932 1.17179 1.06154 1.23114 0.88481 0.91313 1.01414 1.21362 1.01571 1.05513 0.89612 1.20307 0.88433 0.96859 0.93705 1.83914 1.44378 1.63793 1.17921 0.89197 0.87399 0.87533 0.91571 0.91222 0.99258 0.97317 0.92802 0.92935 0.86802 0.80419 0.79851 0.78174 0.81743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.05 14.32 67.78 0.97 -5.08 16 2 C -0.19 -6.86 7.42 25.65 0.19 -6.67 16 3 C 0.10 3.69 5.49 85.56 0.47 4.16 16 4 N -0.53 -21.86 4.65 -909.93 -4.23 -26.09 16 5 C 0.21 10.32 4.58 85.55 0.39 10.72 16 6 C -0.52 -28.23 8.53 25.60 0.22 -28.01 16 7 H 0.06 3.08 7.66 -2.91 -0.02 3.06 16 8 C 0.01 0.55 5.46 84.65 0.46 1.01 16 9 N -0.93 -54.05 13.29 21.45 0.28 -53.77 16 10 Si 0.96 43.50 29.54 68.60 2.03 45.53 16 11 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 12 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 13 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 14 C 0.12 4.17 5.30 85.56 0.45 4.62 16 15 C 0.04 1.28 5.82 24.73 0.14 1.42 16 16 C -0.18 -4.96 11.00 23.50 0.26 -4.70 16 17 C -0.20 -5.34 6.44 -20.23 -0.13 -5.47 16 18 C 0.16 3.59 11.26 84.92 0.96 4.54 16 19 N -0.51 -11.62 10.35 -195.23 -2.02 -13.64 16 20 C 0.11 1.99 11.14 84.53 0.94 2.93 16 21 C -0.16 -3.35 10.13 22.39 0.23 -3.12 16 22 C 0.06 1.71 7.49 23.13 0.17 1.89 16 23 O -0.20 -6.23 9.80 -5.50 -0.05 -6.28 16 24 H 0.09 3.24 7.84 -2.91 -0.02 3.22 16 25 H 0.11 3.24 8.06 -2.91 -0.02 3.22 16 26 H 0.11 3.59 6.80 -2.91 -0.02 3.57 16 27 H 0.07 2.81 7.04 -2.39 -0.02 2.79 16 28 H 0.07 2.55 6.56 -2.39 -0.02 2.53 16 29 H -0.01 -0.56 6.71 -2.39 -0.02 -0.57 16 30 H 0.01 0.46 7.81 -2.39 -0.02 0.44 16 31 H 0.26 14.49 8.31 -92.70 -0.77 13.72 16 32 H 0.05 1.73 6.34 -2.39 -0.02 1.72 16 33 H 0.11 3.58 7.86 -2.39 -0.02 3.56 16 34 H 0.18 4.30 8.06 -2.91 -0.02 4.27 16 35 H 0.18 3.14 8.06 -2.91 -0.02 3.12 16 36 H 0.20 2.08 8.06 -2.91 -0.02 2.05 16 37 H 0.16 2.51 8.06 -2.91 -0.02 2.49 16 Total: -1.00 -64.10 316.55 2.80 -61.30 By element: Atomic # 1 Polarization: 13.65 SS G_CDS: 1.07 Total: 14.72 kcal Atomic # 6 Polarization: -27.49 SS G_CDS: 5.73 Total: -21.76 kcal Atomic # 7 Polarization: -87.53 SS G_CDS: -5.97 Total: -93.50 kcal Atomic # 8 Polarization: -6.23 SS G_CDS: -0.05 Total: -6.28 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.53 kcal Total: -64.10 2.80 -61.30 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593630350.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.051 kcal (2) G-P(sol) polarization free energy of solvation -64.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.298 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds