Wall clock time and date at job start Mon Mar 30 2020 01:02:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.47216 * 2 1 4 4 H 1.08995 * 109.47125 * 304.99854 * 3 2 1 5 5 C 1.47205 * 109.46730 * 184.99866 * 3 2 1 6 6 N 3.43542 * 154.82816 * 351.56729 * 2 1 3 7 7 N 1.46496 * 109.47254 * 65.00381 * 3 2 1 8 8 C 1.46496 * 120.00075 * 59.99297 * 7 3 2 9 9 C 1.34781 * 119.99782 * 240.00051 * 7 3 2 10 10 O 1.21580 * 119.99945 * 354.07027 * 9 7 3 11 11 C 1.47645 * 119.99951 * 174.07147 * 9 7 3 12 12 C 1.40015 * 119.89219 * 325.02893 * 11 9 7 13 13 C 1.36325 * 120.10326 * 180.23042 * 12 11 9 14 14 C 1.40888 * 119.88816 * 359.52706 * 13 12 11 15 15 C 1.41118 * 120.10020 * 180.22964 * 14 13 12 16 16 H 1.07995 * 119.99632 * 214.99749 * 15 14 13 17 17 C 1.40226 * 119.99870 * 34.99543 * 15 14 13 18 18 N 1.30649 * 120.00248 * 5.17437 * 17 15 14 19 19 Si 1.86800 * 119.99725 * 185.17345 * 17 15 14 20 20 H 1.48494 * 109.47259 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47019 * 120.00513 * 19 17 15 22 22 H 1.48504 * 109.46912 * 239.99981 * 19 17 15 23 23 C 1.40886 * 119.79798 * 0.47233 * 14 13 12 24 24 C 1.36316 * 119.89050 * 359.75307 * 23 14 13 25 25 H 1.09000 * 109.46946 * 59.99591 * 1 2 3 26 26 H 1.09000 * 109.47427 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.46855 * 299.99972 * 1 2 3 28 28 H 1.09003 * 109.46855 * 240.00028 * 2 1 3 29 29 H 1.09000 * 109.46946 * 120.00409 * 2 1 3 30 30 H 1.08998 * 109.47990 * 274.77771 * 8 7 3 31 31 H 1.09002 * 109.47445 * 34.78563 * 8 7 3 32 32 H 1.09009 * 109.47024 * 154.77815 * 8 7 3 33 33 H 1.08001 * 119.95221 * 359.96117 * 12 11 9 34 34 H 1.07993 * 120.05220 * 179.74387 * 13 12 11 35 35 H 0.96999 * 119.99938 * 179.97438 * 18 17 15 36 36 H 1.07998 * 120.05691 * 179.73792 * 23 14 13 37 37 H 1.07998 * 119.94732 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5071 1.4441 -0.1209 6 7 4.6392 1.4454 -0.2143 7 7 1.6526 2.0974 1.2518 8 6 2.1140 1.5588 2.5337 9 6 0.8715 3.1955 1.2241 10 8 0.5773 3.7055 0.1604 11 6 0.3732 3.7789 2.4855 12 6 0.0439 2.9426 3.5590 13 6 -0.4210 3.4764 4.7241 14 6 -0.5604 4.8727 4.8502 15 6 -1.0366 5.4303 6.0559 16 1 -1.6596 6.3122 6.0339 17 6 -0.7009 4.8394 7.2824 18 7 0.1334 3.8346 7.3169 19 14 -1.4467 5.4888 8.8672 20 1 -2.3535 6.6236 8.5589 21 1 -2.2157 4.4065 9.5323 22 1 -0.3632 5.9530 9.7703 23 6 -0.2277 5.7101 3.7673 24 6 0.2321 5.1668 2.6046 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 1.4361 0.7709 2.8620 31 1 3.1172 1.1492 2.4157 32 1 2.1321 2.3557 3.2772 33 1 0.1541 1.8726 3.4625 34 1 -0.6788 2.8302 5.5501 35 1 0.3659 3.4261 8.1654 36 1 -0.3369 6.7807 3.8579 37 1 0.4870 5.8079 1.7737 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594086319.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:40 Heat of formation + Delta-G solvation = 10.305651 kcal Electronic energy + Delta-G solvation = -20299.668524 eV Core-core repulsion = 17234.838688 eV Total energy + Delta-G solvation = -3064.829836 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.95590 -37.64261 -36.76769 -35.35576 -33.91772 -32.95293 -30.24750 -29.59641 -28.03695 -26.57497 -25.52714 -22.38958 -21.42745 -21.06785 -19.39350 -17.82216 -17.49066 -16.84587 -16.05499 -15.42634 -14.99677 -14.35110 -14.01997 -13.94208 -13.63557 -13.47035 -13.14342 -12.96262 -12.66242 -12.60536 -12.25995 -12.03409 -11.93901 -11.83885 -11.67015 -11.46723 -11.29004 -11.26631 -11.01001 -10.94455 -10.63725 -10.02977 -9.56541 -9.45696 -9.14834 -8.60893 -7.74869 -7.48932 -6.94637 -4.64471 2.16750 2.42520 2.70450 2.90349 2.93764 2.97155 3.01935 3.47522 3.57934 3.78352 3.89029 4.50286 4.76886 4.89655 5.17297 5.31226 5.38515 5.43506 5.54772 5.69326 5.76073 5.82783 5.98356 6.06387 6.10150 6.19539 6.25456 6.64282 6.73447 6.85213 6.95581 7.06340 7.40183 7.43865 7.48485 7.68811 7.82864 7.86062 8.05033 8.38983 8.63301 8.70048 8.73011 9.98904 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.029190 B = 0.004299 C = 0.004179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.013974 B = 6511.915197 C = 6698.841522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.125 4.125 3 C 0.235 3.765 4 H 0.139 0.861 5 C 0.203 3.797 6 N -0.428 5.428 7 N -0.614 5.614 8 C 0.077 3.923 9 C 0.582 3.418 10 O -0.560 6.560 11 C -0.271 4.271 12 C -0.071 4.071 13 C -0.164 4.164 14 C 0.131 3.869 15 C -0.453 4.453 16 H 0.083 0.917 17 C 0.073 3.927 18 N -0.791 5.791 19 Si 0.915 3.085 20 H -0.259 1.259 21 H -0.271 1.271 22 H -0.272 1.272 23 C -0.227 4.227 24 C -0.032 4.032 25 H 0.059 0.941 26 H 0.059 0.941 27 H 0.063 0.937 28 H 0.079 0.921 29 H 0.074 0.926 30 H 0.060 0.940 31 H 0.054 0.946 32 H 0.096 0.904 33 H 0.101 0.899 34 H 0.120 0.880 35 H 0.283 0.717 36 H 0.099 0.901 37 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.108 -7.502 -4.963 8.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.164 4.164 3 C 0.127 3.873 4 H 0.156 0.844 5 C -0.116 4.116 6 N -0.105 5.105 7 N -0.348 5.348 8 C -0.065 4.065 9 C 0.378 3.622 10 O -0.439 6.439 11 C -0.275 4.275 12 C -0.090 4.090 13 C -0.183 4.183 14 C 0.128 3.872 15 C -0.482 4.482 16 H 0.101 0.899 17 C -0.146 4.146 18 N -0.416 5.416 19 Si 0.740 3.260 20 H -0.183 1.183 21 H -0.196 1.196 22 H -0.198 1.198 23 C -0.247 4.247 24 C -0.051 4.051 25 H 0.079 0.921 26 H 0.078 0.922 27 H 0.082 0.918 28 H 0.097 0.903 29 H 0.093 0.907 30 H 0.079 0.921 31 H 0.072 0.928 32 H 0.115 0.885 33 H 0.119 0.881 34 H 0.138 0.862 35 H 0.094 0.906 36 H 0.118 0.882 37 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 1.548 -7.371 -5.476 9.312 hybrid contribution -0.466 0.191 0.952 1.077 sum 1.082 -7.180 -4.524 8.555 Atomic orbital electron populations 1.21710 0.93781 1.01939 1.03198 1.21831 0.97786 0.93381 1.03427 1.18470 0.80896 0.96307 0.91580 0.84361 1.29760 0.95528 0.92936 0.93409 1.81154 1.12881 1.08564 1.07903 1.47771 1.52032 1.29838 1.05201 1.22099 0.98303 1.00610 0.85507 1.18841 0.75951 0.77420 0.90032 1.90658 1.59656 1.60947 1.32641 1.18803 1.20271 0.94274 0.94138 1.20780 0.97950 0.97449 0.92845 1.21022 1.05355 0.95477 0.96453 1.17823 0.86066 0.91645 0.91676 1.19798 1.27176 1.10974 0.90259 0.89905 1.25996 0.93351 0.93738 1.01485 1.69682 1.24761 1.18332 1.28810 0.86129 0.79724 0.79899 0.80283 1.18282 1.19598 1.19767 1.20826 1.10053 0.98295 0.95482 1.20305 0.95717 0.92835 0.96216 0.92147 0.92187 0.91759 0.90288 0.90702 0.92113 0.92758 0.88509 0.88089 0.86184 0.90551 0.88244 0.88452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 9.80 37.16 0.36 -1.10 16 2 C -0.12 -1.18 5.32 -26.73 -0.14 -1.32 16 3 C 0.24 2.96 2.49 -70.72 -0.18 2.78 16 4 H 0.14 1.80 6.91 -51.93 -0.36 1.44 16 5 C 0.20 2.84 13.90 -20.76 -0.29 2.55 16 6 N -0.43 -6.83 18.54 42.15 0.78 -6.04 16 7 N -0.61 -9.27 2.19 -178.36 -0.39 -9.66 16 8 C 0.08 1.06 7.81 59.84 0.47 1.52 16 9 C 0.58 11.07 7.35 -12.42 -0.09 10.98 16 10 O -0.56 -11.86 16.15 5.29 0.09 -11.77 16 11 C -0.27 -5.65 5.18 -104.73 -0.54 -6.19 16 12 C -0.07 -1.45 7.52 -39.60 -0.30 -1.75 16 13 C -0.16 -3.77 8.56 -39.27 -0.34 -4.11 16 14 C 0.13 3.19 5.50 -106.80 -0.59 2.60 16 15 C -0.45 -11.01 9.03 -37.74 -0.34 -11.35 16 16 H 0.08 1.94 7.85 -52.49 -0.41 1.53 16 17 C 0.07 1.67 5.31 -17.31 -0.09 1.58 16 18 N -0.79 -18.57 10.98 55.56 0.61 -17.96 16 19 Si 0.92 17.23 29.56 -169.99 -5.03 12.20 16 20 H -0.26 -4.86 7.11 56.52 0.40 -4.46 16 21 H -0.27 -5.01 7.11 56.52 0.40 -4.61 16 22 H -0.27 -5.10 7.11 56.52 0.40 -4.70 16 23 C -0.23 -5.23 9.73 -39.27 -0.38 -5.61 16 24 C -0.03 -0.69 9.54 -39.61 -0.38 -1.07 16 25 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 27 H 0.06 0.76 7.75 -51.93 -0.40 0.36 16 28 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 29 H 0.07 0.67 7.51 -51.93 -0.39 0.28 16 30 H 0.06 0.72 7.01 -51.93 -0.36 0.35 16 31 H 0.05 0.67 7.28 -51.93 -0.38 0.29 16 32 H 0.10 1.55 5.76 -51.92 -0.30 1.25 16 33 H 0.10 1.75 5.48 -52.49 -0.29 1.46 16 34 H 0.12 2.84 6.50 -52.49 -0.34 2.50 16 35 H 0.28 6.03 8.29 -40.82 -0.34 5.70 16 36 H 0.10 2.15 8.06 -52.49 -0.42 1.73 16 37 H 0.10 2.05 7.99 -52.49 -0.42 1.63 16 LS Contribution 316.61 15.07 4.77 4.77 Total: -1.00 -27.29 316.61 -6.47 -33.76 By element: Atomic # 1 Polarization: 9.65 SS G_CDS: -4.48 Total: 5.18 kcal Atomic # 6 Polarization: -7.65 SS G_CDS: -2.82 Total: -10.47 kcal Atomic # 7 Polarization: -34.67 SS G_CDS: 1.00 Total: -33.67 kcal Atomic # 8 Polarization: -11.86 SS G_CDS: 0.09 Total: -11.77 kcal Atomic # 14 Polarization: 17.23 SS G_CDS: -5.03 Total: 12.20 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -27.29 -6.47 -33.76 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594086319.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.063 kcal (2) G-P(sol) polarization free energy of solvation -27.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.757 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds