Wall clock time and date at job start Mon Mar 30 2020 01:02:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.47216 * 2 1 4 4 H 1.08995 * 109.47125 * 304.99854 * 3 2 1 5 5 C 1.47205 * 109.46730 * 184.99866 * 3 2 1 6 6 N 3.43542 * 154.82816 * 351.56729 * 2 1 3 7 7 N 1.46496 * 109.47254 * 65.00381 * 3 2 1 8 8 C 1.46496 * 120.00075 * 59.99297 * 7 3 2 9 9 C 1.34781 * 119.99782 * 240.00051 * 7 3 2 10 10 O 1.21580 * 119.99945 * 354.07027 * 9 7 3 11 11 C 1.47645 * 119.99951 * 174.07147 * 9 7 3 12 12 C 1.40015 * 119.89219 * 325.02893 * 11 9 7 13 13 C 1.36325 * 120.10326 * 180.23042 * 12 11 9 14 14 C 1.40888 * 119.88816 * 359.52706 * 13 12 11 15 15 C 1.41118 * 120.10020 * 180.22964 * 14 13 12 16 16 H 1.07995 * 119.99632 * 214.99749 * 15 14 13 17 17 C 1.40226 * 119.99870 * 34.99543 * 15 14 13 18 18 N 1.30649 * 120.00248 * 5.17437 * 17 15 14 19 19 Si 1.86800 * 119.99725 * 185.17345 * 17 15 14 20 20 H 1.48494 * 109.47259 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47019 * 120.00513 * 19 17 15 22 22 H 1.48504 * 109.46912 * 239.99981 * 19 17 15 23 23 C 1.40886 * 119.79798 * 0.47233 * 14 13 12 24 24 C 1.36316 * 119.89050 * 359.75307 * 23 14 13 25 25 H 1.09000 * 109.46946 * 59.99591 * 1 2 3 26 26 H 1.09000 * 109.47427 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.46855 * 299.99972 * 1 2 3 28 28 H 1.09003 * 109.46855 * 240.00028 * 2 1 3 29 29 H 1.09000 * 109.46946 * 120.00409 * 2 1 3 30 30 H 1.08998 * 109.47990 * 274.77771 * 8 7 3 31 31 H 1.09002 * 109.47445 * 34.78563 * 8 7 3 32 32 H 1.09009 * 109.47024 * 154.77815 * 8 7 3 33 33 H 1.08001 * 119.95221 * 359.96117 * 12 11 9 34 34 H 1.07993 * 120.05220 * 179.74387 * 13 12 11 35 35 H 0.96999 * 119.99938 * 179.97438 * 18 17 15 36 36 H 1.07998 * 120.05691 * 179.73792 * 23 14 13 37 37 H 1.07998 * 119.94732 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5071 1.4441 -0.1209 6 7 4.6392 1.4454 -0.2143 7 7 1.6526 2.0974 1.2518 8 6 2.1140 1.5588 2.5337 9 6 0.8715 3.1955 1.2241 10 8 0.5773 3.7055 0.1604 11 6 0.3732 3.7789 2.4855 12 6 0.0439 2.9426 3.5590 13 6 -0.4210 3.4764 4.7241 14 6 -0.5604 4.8727 4.8502 15 6 -1.0366 5.4303 6.0559 16 1 -1.6596 6.3122 6.0339 17 6 -0.7009 4.8394 7.2824 18 7 0.1334 3.8346 7.3169 19 14 -1.4467 5.4888 8.8672 20 1 -2.3535 6.6236 8.5589 21 1 -2.2157 4.4065 9.5323 22 1 -0.3632 5.9530 9.7703 23 6 -0.2277 5.7101 3.7673 24 6 0.2321 5.1668 2.6046 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 1.4361 0.7709 2.8620 31 1 3.1172 1.1492 2.4157 32 1 2.1321 2.3557 3.2772 33 1 0.1541 1.8726 3.4625 34 1 -0.6788 2.8302 5.5501 35 1 0.3659 3.4261 8.1654 36 1 -0.3369 6.7807 3.8579 37 1 0.4870 5.8079 1.7737 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594086319.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:39 Heat of formation + Delta-G solvation = -2.929320 kcal Electronic energy + Delta-G solvation = -20300.242435 eV Core-core repulsion = 17234.838688 eV Total energy + Delta-G solvation = -3065.403747 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.36679 -39.19644 -38.17877 -36.60655 -35.59795 -34.07877 -31.84302 -31.34253 -29.16029 -27.98791 -27.01840 -23.74695 -22.79185 -22.58293 -20.87763 -19.31068 -18.89314 -18.25945 -17.49955 -16.96689 -16.28499 -15.85208 -15.48852 -15.10293 -14.96922 -14.70427 -14.45250 -14.37376 -14.13867 -13.92836 -13.61082 -13.57547 -13.34491 -13.08254 -12.97389 -12.83107 -12.58316 -12.54074 -12.32216 -12.12166 -11.81364 -11.68520 -11.29375 -11.13559 -10.71928 -9.89041 -9.48641 -9.25569 -8.65209 -6.45949 0.49913 1.15915 1.23103 1.42084 1.43072 1.56233 1.59254 1.98481 2.21854 2.31372 2.72920 2.82473 3.65895 3.80272 3.91583 4.14964 4.17399 4.38990 4.43999 4.47900 4.61280 4.67740 4.87567 4.93190 4.99945 5.10295 5.11786 5.17161 5.19863 5.32384 5.45220 5.51833 5.66536 5.78684 5.96682 6.05299 6.28748 6.30531 6.36836 6.61132 6.85678 6.92771 7.22292 8.30775 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.029190 B = 0.004299 C = 0.004179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.013974 B = 6511.915197 C = 6698.841522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.116 4.116 3 C 0.236 3.764 4 H 0.137 0.863 5 C 0.223 3.777 6 N -0.461 5.461 7 N -0.605 5.605 8 C 0.074 3.926 9 C 0.585 3.415 10 O -0.584 6.584 11 C -0.271 4.271 12 C -0.056 4.056 13 C -0.181 4.181 14 C 0.104 3.896 15 C -0.489 4.489 16 H 0.079 0.921 17 C 0.038 3.962 18 N -0.818 5.818 19 Si 0.984 3.016 20 H -0.260 1.260 21 H -0.262 1.262 22 H -0.268 1.268 23 C -0.241 4.241 24 C -0.043 4.043 25 H 0.055 0.945 26 H 0.080 0.920 27 H 0.042 0.958 28 H 0.105 0.895 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.134 0.866 34 H 0.111 0.889 35 H 0.292 0.708 36 H 0.102 0.898 37 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.043 -9.370 -5.124 10.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.155 4.155 3 C 0.129 3.871 4 H 0.154 0.846 5 C -0.096 4.096 6 N -0.138 5.138 7 N -0.338 5.338 8 C -0.067 4.067 9 C 0.379 3.621 10 O -0.465 6.465 11 C -0.275 4.275 12 C -0.074 4.074 13 C -0.200 4.200 14 C 0.101 3.899 15 C -0.518 4.518 16 H 0.097 0.903 17 C -0.178 4.178 18 N -0.443 5.443 19 Si 0.805 3.195 20 H -0.184 1.184 21 H -0.186 1.186 22 H -0.193 1.193 23 C -0.261 4.261 24 C -0.062 4.062 25 H 0.074 0.926 26 H 0.099 0.901 27 H 0.061 0.939 28 H 0.123 0.877 29 H 0.106 0.894 30 H 0.105 0.895 31 H 0.090 0.910 32 H 0.091 0.909 33 H 0.152 0.848 34 H 0.129 0.871 35 H 0.103 0.897 36 H 0.120 0.880 37 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 1.722 -9.271 -5.649 10.992 hybrid contribution -0.445 0.714 0.857 1.201 sum 1.277 -8.557 -4.792 9.890 Atomic orbital electron populations 1.21705 0.93928 1.02956 1.01938 1.21858 0.97406 0.90902 1.05368 1.18789 0.80012 0.98251 0.90024 0.84567 1.29878 0.95474 0.91844 0.92435 1.81189 1.13906 1.09812 1.08892 1.47669 1.50581 1.28631 1.06894 1.22192 1.00056 1.00365 0.84128 1.18493 0.76510 0.78297 0.88765 1.90651 1.60812 1.62018 1.33044 1.19104 1.19168 0.94064 0.95166 1.21006 0.95883 0.99035 0.91485 1.21017 1.06770 0.94978 0.97279 1.18143 0.86901 0.92609 0.92253 1.19999 1.28643 1.11815 0.91353 0.90335 1.26735 0.93307 0.93777 1.04013 1.69713 1.25380 1.19163 1.30063 0.85106 0.78860 0.79305 0.76188 1.18407 1.18641 1.19276 1.20944 1.10718 0.98566 0.95840 1.20479 0.95804 0.93841 0.96078 0.92584 0.90063 0.93865 0.87705 0.89423 0.89497 0.90959 0.90906 0.84793 0.87141 0.89743 0.87980 0.87894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.44 9.80 71.98 0.71 -1.74 16 2 C -0.12 -1.75 5.32 30.59 0.16 -1.59 16 3 C 0.24 5.31 2.49 43.19 0.11 5.42 16 4 H 0.14 3.25 6.91 -2.39 -0.02 3.24 16 5 C 0.22 5.69 13.90 89.44 1.24 6.93 16 6 N -0.46 -13.84 18.54 20.01 0.37 -13.47 16 7 N -0.60 -16.94 2.19 -836.47 -1.83 -18.78 16 8 C 0.07 1.83 7.81 127.77 1.00 2.83 16 9 C 0.59 21.57 7.35 86.73 0.64 22.21 16 10 O -0.58 -24.23 16.15 -3.97 -0.06 -24.30 16 11 C -0.27 -11.19 5.18 -19.93 -0.10 -11.30 16 12 C -0.06 -2.22 7.52 22.25 0.17 -2.05 16 13 C -0.18 -8.45 8.56 22.47 0.19 -8.26 16 14 C 0.10 5.20 5.50 -21.28 -0.12 5.09 16 15 C -0.49 -24.50 9.03 23.46 0.21 -24.28 16 16 H 0.08 3.83 7.85 -2.91 -0.02 3.81 16 17 C 0.04 1.75 5.31 85.35 0.45 2.20 16 18 N -0.82 -38.74 10.98 21.87 0.24 -38.50 16 19 Si 0.98 35.32 29.56 68.60 2.03 37.34 16 20 H -0.26 -9.28 7.11 99.48 0.71 -8.57 16 21 H -0.26 -8.94 7.11 99.48 0.71 -8.24 16 22 H -0.27 -9.34 7.11 99.48 0.71 -8.63 16 23 C -0.24 -11.45 9.73 22.47 0.22 -11.23 16 24 C -0.04 -1.91 9.54 22.25 0.21 -1.70 16 25 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 26 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 27 H 0.04 0.90 7.75 -2.39 -0.02 0.88 16 28 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.09 1.16 7.51 -2.39 -0.02 1.14 16 30 H 0.09 1.73 7.01 -2.39 -0.02 1.71 16 31 H 0.07 1.56 7.28 -2.39 -0.02 1.54 16 32 H 0.07 2.21 5.76 -2.38 -0.01 2.20 16 33 H 0.13 4.34 5.48 -2.91 -0.02 4.32 16 34 H 0.11 5.32 6.50 -2.91 -0.02 5.30 16 35 H 0.29 12.39 8.29 -92.71 -0.77 11.62 16 36 H 0.10 4.61 8.06 -2.91 -0.02 4.59 16 37 H 0.10 4.39 7.99 -2.91 -0.02 4.37 16 Total: -1.00 -59.73 316.61 6.92 -52.81 By element: Atomic # 1 Polarization: 21.27 SS G_CDS: 1.09 Total: 22.36 kcal Atomic # 6 Polarization: -22.56 SS G_CDS: 5.09 Total: -17.47 kcal Atomic # 7 Polarization: -69.52 SS G_CDS: -1.22 Total: -70.74 kcal Atomic # 8 Polarization: -24.23 SS G_CDS: -0.06 Total: -24.30 kcal Atomic # 14 Polarization: 35.32 SS G_CDS: 2.03 Total: 37.34 kcal Total: -59.73 6.92 -52.81 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594086319.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.878 kcal (2) G-P(sol) polarization free energy of solvation -59.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds