Wall clock time and date at job start Mon Mar 30 2020 01:02:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47175 * 2 1 4 4 H 1.09000 * 109.47153 * 304.99500 * 3 2 1 5 5 C 1.47202 * 109.47021 * 185.00221 * 3 2 1 6 6 N 3.43550 * 154.82678 * 351.56647 * 2 1 3 7 7 N 1.46496 * 109.47498 * 64.99917 * 3 2 1 8 8 C 1.46493 * 120.00007 * 60.00254 * 7 3 2 9 9 C 1.34776 * 119.99802 * 240.00242 * 7 3 2 10 10 O 1.21552 * 120.00257 * 7.37327 * 9 7 3 11 11 C 1.47889 * 119.99925 * 187.37434 * 9 7 3 12 12 C 1.39918 * 120.02400 * 324.15737 * 11 9 7 13 13 C 1.38333 * 120.35559 * 179.71490 * 12 11 9 14 14 C 1.37752 * 120.41062 * 0.56256 * 13 12 11 15 15 C 1.40751 * 120.04075 * 359.71535 * 14 13 12 16 16 C 1.41432 * 120.17520 * 180.02562 * 15 14 13 17 17 H 1.08006 * 120.00212 * 342.15514 * 16 15 14 18 18 C 1.39936 * 120.00206 * 162.15591 * 16 15 14 19 19 N 1.30834 * 119.99641 * 337.39102 * 18 16 15 20 20 Si 1.86800 * 120.00363 * 157.39141 * 18 16 15 21 21 H 1.48495 * 109.47254 * 59.99796 * 20 18 16 22 22 H 1.48502 * 109.47163 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.46871 * 299.99833 * 20 18 16 24 24 C 1.38996 * 120.02225 * 144.43007 * 11 9 7 25 25 H 1.08992 * 109.47084 * 60.00065 * 1 2 3 26 26 H 1.08993 * 109.47203 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.46740 * 300.00503 * 1 2 3 28 28 H 1.08995 * 109.47053 * 239.99137 * 2 1 3 29 29 H 1.09003 * 109.46972 * 119.99515 * 2 1 3 30 30 H 1.09010 * 109.47039 * 265.03532 * 8 7 3 31 31 H 1.08999 * 109.47137 * 145.03957 * 8 7 3 32 32 H 1.08996 * 109.47408 * 25.03631 * 8 7 3 33 33 H 1.08000 * 119.81995 * 359.97386 * 12 11 9 34 34 H 1.08002 * 119.79218 * 180.25531 * 13 12 11 35 35 H 1.07998 * 119.97679 * 179.74196 * 14 13 12 36 36 H 0.96999 * 119.99771 * 179.97438 * 19 18 16 37 37 H 1.07997 * 120.20560 * 359.97438 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 -0.8419 5 6 3.5071 1.4442 -0.1210 6 7 4.6392 1.4455 -0.2143 7 7 1.6525 2.0975 1.2517 8 6 2.1140 1.5591 2.5336 9 6 0.8714 3.1955 1.2239 10 8 0.3788 3.5646 0.1758 11 6 0.6138 3.9514 2.4687 12 6 0.4799 3.2726 3.6849 13 6 0.2447 3.9733 4.8543 14 6 0.1280 5.3457 4.8334 15 6 0.2540 6.0452 3.6185 16 6 0.1353 7.4543 3.5939 17 1 -0.3279 7.9718 4.4211 18 6 0.6180 8.1781 2.4979 19 7 1.5413 7.6615 1.7282 20 14 -0.0559 9.8818 2.1336 21 1 0.1998 10.7736 3.2931 22 1 0.6144 10.4320 0.9281 23 1 -1.5181 9.7940 1.8897 24 6 0.4988 5.3360 2.4304 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 1.3512 0.8985 2.9460 31 1 2.2976 2.3795 3.2273 32 1 3.0363 0.9987 2.3814 33 1 0.5648 2.1963 3.7115 34 1 0.1469 3.4405 5.7886 35 1 -0.0598 5.8853 5.7499 36 1 1.8757 8.1631 0.9683 37 1 0.5975 5.8637 1.4933 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594089931.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:46 Heat of formation + Delta-G solvation = 19.102433 kcal Electronic energy + Delta-G solvation = -20498.110428 eV Core-core repulsion = 17433.662049 eV Total energy + Delta-G solvation = -3064.448379 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.01292 -37.56508 -36.72871 -35.36747 -33.97941 -32.95962 -30.23881 -29.49673 -28.02590 -26.45366 -25.32527 -22.76632 -21.52299 -21.02917 -19.28582 -17.84832 -17.64390 -16.42646 -15.88165 -15.22028 -15.03696 -14.83580 -14.06775 -13.89415 -13.60162 -13.46364 -13.21167 -12.96150 -12.64472 -12.56583 -12.43277 -12.19448 -11.99990 -11.69462 -11.54314 -11.32628 -11.17202 -11.10129 -10.99382 -10.62595 -10.53016 -10.16073 -9.72560 -9.20472 -9.12260 -8.63287 -7.68147 -7.58049 -6.90859 -4.45396 2.20758 2.40905 2.72668 2.77413 3.03426 3.04901 3.14645 3.45243 3.57333 3.85601 3.90255 4.49295 4.74508 4.89074 5.14615 5.27337 5.31931 5.52345 5.53558 5.66986 5.68972 5.81319 5.96225 6.04485 6.10418 6.25246 6.30336 6.60283 6.69570 6.91608 7.00181 7.15990 7.32575 7.45376 7.53331 7.71317 7.80232 7.92005 8.11324 8.44145 8.63976 8.74976 8.79071 10.02279 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.021360 B = 0.005265 C = 0.004785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.556319 B = 5316.910437 C = 5850.201070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.123 4.123 3 C 0.235 3.765 4 H 0.140 0.860 5 C 0.201 3.799 6 N -0.424 5.424 7 N -0.611 5.611 8 C 0.073 3.927 9 C 0.577 3.423 10 O -0.539 6.539 11 C -0.121 4.121 12 C -0.235 4.235 13 C -0.095 4.095 14 C -0.217 4.217 15 C 0.099 3.901 16 C -0.455 4.455 17 H 0.082 0.918 18 C 0.076 3.924 19 N -0.779 5.779 20 Si 0.910 3.090 21 H -0.264 1.264 22 H -0.277 1.277 23 H -0.261 1.261 24 C -0.107 4.107 25 H 0.061 0.939 26 H 0.058 0.942 27 H 0.062 0.938 28 H 0.079 0.921 29 H 0.074 0.926 30 H 0.062 0.938 31 H 0.099 0.901 32 H 0.056 0.944 33 H 0.106 0.894 34 H 0.093 0.907 35 H 0.094 0.906 36 H 0.286 0.714 37 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.240 -10.961 -1.073 11.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.163 4.163 3 C 0.128 3.872 4 H 0.157 0.843 5 C -0.118 4.118 6 N -0.101 5.101 7 N -0.346 5.346 8 C -0.069 4.069 9 C 0.369 3.631 10 O -0.415 6.415 11 C -0.124 4.124 12 C -0.255 4.255 13 C -0.113 4.113 14 C -0.237 4.237 15 C 0.096 3.904 16 C -0.483 4.483 17 H 0.100 0.900 18 C -0.144 4.144 19 N -0.403 5.403 20 Si 0.734 3.266 21 H -0.189 1.189 22 H -0.202 1.202 23 H -0.185 1.185 24 C -0.127 4.127 25 H 0.080 0.920 26 H 0.077 0.923 27 H 0.081 0.919 28 H 0.098 0.902 29 H 0.092 0.908 30 H 0.080 0.920 31 H 0.117 0.883 32 H 0.075 0.925 33 H 0.124 0.876 34 H 0.111 0.889 35 H 0.113 0.887 36 H 0.097 0.903 37 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 0.356 -10.679 -1.978 10.866 hybrid contribution -0.465 0.752 -0.052 0.886 sum -0.109 -9.927 -2.030 10.133 Atomic orbital electron populations 1.21696 0.93770 1.01772 1.03275 1.21826 0.97795 0.93268 1.03396 1.18474 0.80914 0.96424 0.91434 0.84288 1.29705 0.95474 0.93079 0.93589 1.81161 1.12808 1.08407 1.07686 1.47737 1.52178 1.29289 1.05422 1.22312 0.98513 1.00525 0.85549 1.19051 0.76310 0.77872 0.89822 1.90693 1.50206 1.67556 1.33078 1.19309 1.07647 0.94429 0.91034 1.20791 1.14465 0.97994 0.92201 1.20443 1.00426 0.94332 0.96122 1.21043 1.12139 0.93632 0.96849 1.17552 0.89052 0.93392 0.90376 1.19603 1.33667 0.91516 1.03542 0.89981 1.25998 0.92652 1.00800 0.94972 1.69795 1.18395 1.38781 1.13329 0.86329 0.80552 0.81073 0.78673 1.18859 1.20185 1.18547 1.21624 1.01077 0.90399 0.99629 0.91996 0.92275 0.91922 0.90231 0.90769 0.91950 0.88302 0.92536 0.87601 0.88911 0.88750 0.90331 0.84868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 9.80 37.16 0.36 -1.10 16 2 C -0.12 -1.17 5.32 -26.73 -0.14 -1.31 16 3 C 0.24 3.07 2.48 -70.72 -0.18 2.90 16 4 H 0.14 1.91 6.92 -51.93 -0.36 1.55 16 5 C 0.20 2.92 13.91 -20.76 -0.29 2.63 16 6 N -0.42 -7.00 18.54 42.15 0.78 -6.21 16 7 N -0.61 -9.51 2.19 -178.27 -0.39 -9.90 16 8 C 0.07 0.97 7.74 59.84 0.46 1.43 16 9 C 0.58 11.66 7.39 -12.31 -0.09 11.57 16 10 O -0.54 -12.17 16.18 5.32 0.09 -12.08 16 11 C -0.12 -2.70 5.39 -105.04 -0.57 -3.26 16 12 C -0.23 -4.62 7.52 -38.92 -0.29 -4.91 16 13 C -0.09 -1.92 10.01 -39.72 -0.40 -2.32 16 14 C -0.22 -4.97 9.78 -38.81 -0.38 -5.35 16 15 C 0.10 2.53 5.63 -106.87 -0.60 1.93 16 16 C -0.46 -11.64 9.05 -37.73 -0.34 -11.98 16 17 H 0.08 1.99 7.94 -52.48 -0.42 1.58 16 18 C 0.08 1.86 5.10 -17.34 -0.09 1.77 16 19 N -0.78 -19.93 10.82 55.55 0.60 -19.33 16 20 Si 0.91 18.32 29.61 -169.99 -5.03 13.29 16 21 H -0.26 -5.19 7.11 56.52 0.40 -4.78 16 22 H -0.28 -5.47 7.11 56.52 0.40 -5.07 16 23 H -0.26 -5.25 7.11 56.52 0.40 -4.84 16 24 C -0.11 -2.75 8.33 -38.44 -0.32 -3.07 16 25 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.06 0.74 7.75 -51.93 -0.40 0.33 16 28 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.07 0.64 7.51 -51.93 -0.39 0.25 16 30 H 0.06 0.69 6.98 -51.92 -0.36 0.33 16 31 H 0.10 1.51 5.49 -51.93 -0.29 1.22 16 32 H 0.06 0.65 7.28 -51.93 -0.38 0.27 16 33 H 0.11 1.71 4.85 -52.49 -0.25 1.45 16 34 H 0.09 1.59 8.06 -52.49 -0.42 1.16 16 35 H 0.09 2.02 8.06 -52.49 -0.42 1.60 16 36 H 0.29 6.72 8.30 -40.82 -0.34 6.38 16 37 H 0.13 3.69 5.79 -52.49 -0.30 3.39 16 LS Contribution 315.45 15.07 4.75 4.75 Total: -1.00 -28.82 315.45 -6.46 -35.28 By element: Atomic # 1 Polarization: 9.69 SS G_CDS: -4.40 Total: 5.29 kcal Atomic # 6 Polarization: -8.22 SS G_CDS: -2.86 Total: -11.08 kcal Atomic # 7 Polarization: -36.43 SS G_CDS: 0.99 Total: -35.44 kcal Atomic # 8 Polarization: -12.17 SS G_CDS: 0.09 Total: -12.08 kcal Atomic # 14 Polarization: 18.32 SS G_CDS: -5.03 Total: 13.29 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -28.82 -6.46 -35.28 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594089931.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.382 kcal (2) G-P(sol) polarization free energy of solvation -28.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.280 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds