Wall clock time and date at job start Mon Mar 30 2020 01:02:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47008 * 2 1 4 4 H 1.09001 * 109.46927 * 55.00038 * 3 2 1 5 5 C 1.47202 * 109.47270 * 174.99973 * 3 2 1 6 6 N 3.43548 * 154.82395 * 8.43433 * 2 1 3 7 7 N 1.46500 * 109.46814 * 294.99921 * 3 2 1 8 8 C 1.46495 * 120.00087 * 299.99833 * 7 3 2 9 9 C 1.34774 * 119.99745 * 120.00215 * 7 3 2 10 10 O 1.21550 * 120.00126 * 4.70821 * 9 7 3 11 11 C 1.47885 * 119.99944 * 184.70000 * 9 7 3 12 12 C 1.39925 * 120.02194 * 22.06854 * 11 9 7 13 13 C 1.38333 * 120.35284 * 179.71087 * 12 11 9 14 14 C 1.37746 * 120.41658 * 0.56040 * 13 12 11 15 15 C 1.40755 * 120.03546 * 359.71808 * 14 13 12 16 16 C 1.41441 * 120.17250 * 180.02562 * 15 14 13 17 17 H 1.08003 * 120.00366 * 28.88286 * 16 15 14 18 18 C 1.39937 * 119.99865 * 208.87443 * 16 15 14 19 19 N 1.30830 * 119.99946 * 10.24387 * 18 16 15 20 20 Si 1.86798 * 120.00138 * 190.24636 * 18 16 15 21 21 H 1.48498 * 109.46956 * 359.97438 * 20 18 16 22 22 H 1.48505 * 109.47431 * 119.99736 * 20 18 16 23 23 H 1.48497 * 109.47258 * 239.99974 * 20 18 16 24 24 C 1.38996 * 120.02818 * 202.33550 * 11 9 7 25 25 H 1.09005 * 109.47251 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47213 * 299.99742 * 1 2 3 27 27 H 1.08997 * 109.47189 * 60.00266 * 1 2 3 28 28 H 1.08998 * 109.47456 * 239.99763 * 2 1 3 29 29 H 1.09006 * 109.47259 * 119.99912 * 2 1 3 30 30 H 1.08997 * 109.47401 * 84.51487 * 8 7 3 31 31 H 1.08999 * 109.47194 * 204.51583 * 8 7 3 32 32 H 1.09000 * 109.47571 * 324.51038 * 8 7 3 33 33 H 1.07999 * 119.81876 * 359.97288 * 12 11 9 34 34 H 1.08001 * 119.78994 * 180.25465 * 13 12 11 35 35 H 1.07995 * 119.98181 * 179.73757 * 14 13 12 36 36 H 0.97004 * 119.99894 * 180.02562 * 19 18 16 37 37 H 1.08004 * 120.19815 * 359.97438 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5070 1.4443 0.1210 6 7 4.6391 1.4457 0.2144 7 7 1.6523 2.0974 -1.2518 8 6 2.1138 1.5589 -2.5337 9 6 0.8713 3.1954 -1.2241 10 8 0.5589 3.6924 -0.1598 11 6 0.3944 3.7957 -2.4888 12 6 0.3404 3.0228 -3.6540 13 6 -0.1102 3.5756 -4.8393 14 6 -0.4999 4.8959 -4.8892 15 6 -0.4471 5.6905 -3.7286 16 6 -0.8471 7.0463 -3.7764 17 1 -1.5931 7.3644 -4.4897 18 6 -0.2764 7.9755 -2.8995 19 7 0.7620 7.6412 -2.1772 20 14 -0.9972 9.6932 -2.7600 21 1 -2.1590 9.8183 -3.6763 22 1 -1.4400 9.9323 -1.3628 23 1 0.0348 10.6946 -3.1304 24 6 0.0047 5.1295 -2.5221 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.4431 0.7624 -2.8558 31 1 2.1198 2.3529 -3.2804 32 1 3.1220 1.1607 -2.4188 33 1 0.6482 1.9879 -3.6267 34 1 -0.1520 2.9696 -5.7322 35 1 -0.8465 5.3214 -5.8193 36 1 1.1574 8.2853 -1.5691 37 1 0.0484 5.7308 -1.6260 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594089933.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:48 Heat of formation + Delta-G solvation = 29.166181 kcal Electronic energy + Delta-G solvation = -20490.678845 eV Core-core repulsion = 17426.666863 eV Total energy + Delta-G solvation = -3064.011982 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.06922 -37.58345 -36.74280 -35.41580 -33.95026 -32.95460 -30.26224 -29.52610 -28.03825 -26.54784 -25.26895 -22.77297 -21.51742 -21.04898 -19.31671 -17.86907 -17.65381 -16.39680 -15.87935 -15.18759 -15.10889 -14.80190 -14.01822 -13.95809 -13.61448 -13.44786 -13.22639 -12.98081 -12.67317 -12.55755 -12.49367 -12.16656 -12.01016 -11.70371 -11.54131 -11.31931 -11.19116 -11.09350 -11.01631 -10.55180 -10.36812 -10.09380 -9.66518 -9.30936 -9.10576 -8.65769 -7.69318 -7.49422 -6.78492 -4.47194 2.11249 2.40733 2.71442 2.76200 3.06989 3.09889 3.11649 3.46581 3.60062 3.89075 3.91089 4.58252 4.75204 4.87907 5.13857 5.25272 5.30681 5.48983 5.51103 5.66546 5.67492 5.80467 5.94719 6.00879 6.05675 6.23689 6.24642 6.57199 6.67920 6.93319 6.95502 7.17415 7.32292 7.44404 7.51934 7.66973 7.78087 7.93145 8.12357 8.45925 8.66209 8.77894 8.79725 10.15790 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.022815 B = 0.005087 C = 0.004656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1226.962963 B = 5502.450995 C = 6011.952484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.124 4.124 3 C 0.235 3.765 4 H 0.140 0.860 5 C 0.203 3.797 6 N -0.426 5.426 7 N -0.611 5.611 8 C 0.064 3.936 9 C 0.574 3.426 10 O -0.539 6.539 11 C -0.130 4.130 12 C -0.232 4.232 13 C -0.103 4.103 14 C -0.204 4.204 15 C 0.098 3.902 16 C -0.460 4.460 17 H 0.081 0.919 18 C 0.071 3.929 19 N -0.797 5.797 20 Si 0.913 3.087 21 H -0.260 1.260 22 H -0.271 1.271 23 H -0.274 1.274 24 C -0.085 4.085 25 H 0.059 0.941 26 H 0.060 0.940 27 H 0.063 0.937 28 H 0.074 0.926 29 H 0.079 0.921 30 H 0.063 0.937 31 H 0.111 0.889 32 H 0.052 0.948 33 H 0.119 0.881 34 H 0.094 0.906 35 H 0.096 0.904 36 H 0.283 0.717 37 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.456 -11.365 1.129 11.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.163 4.163 3 C 0.127 3.873 4 H 0.157 0.843 5 C -0.117 4.117 6 N -0.103 5.103 7 N -0.346 5.346 8 C -0.078 4.078 9 C 0.367 3.633 10 O -0.416 6.416 11 C -0.133 4.133 12 C -0.251 4.251 13 C -0.121 4.121 14 C -0.224 4.224 15 C 0.095 3.905 16 C -0.490 4.490 17 H 0.099 0.901 18 C -0.146 4.146 19 N -0.422 5.422 20 Si 0.737 3.263 21 H -0.184 1.184 22 H -0.196 1.196 23 H -0.199 1.199 24 C -0.105 4.105 25 H 0.078 0.922 26 H 0.079 0.921 27 H 0.082 0.918 28 H 0.093 0.907 29 H 0.098 0.902 30 H 0.081 0.919 31 H 0.129 0.871 32 H 0.071 0.929 33 H 0.136 0.864 34 H 0.112 0.888 35 H 0.114 0.886 36 H 0.094 0.906 37 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 1.237 -10.960 2.009 11.211 hybrid contribution -0.452 0.796 -0.047 0.917 sum 0.785 -10.164 1.962 10.382 Atomic orbital electron populations 1.21715 0.93771 1.01928 1.03277 1.21822 0.97784 0.93272 1.03438 1.18494 0.80993 0.96330 0.91477 0.84250 1.29712 0.95489 0.92996 0.93506 1.81155 1.12852 1.08494 1.07780 1.47716 1.51995 1.29508 1.05361 1.22598 0.98167 1.00922 0.86132 1.19030 0.76351 0.77610 0.90300 1.90699 1.57822 1.60775 1.32272 1.19347 1.06784 0.95903 0.91294 1.21261 1.11168 0.99691 0.93028 1.20499 1.00092 0.95266 0.96287 1.21204 1.09095 0.94734 0.97351 1.17610 0.89699 0.93128 0.90055 1.19619 1.20653 0.92292 1.16393 0.90118 1.25932 0.93608 1.01382 0.93695 1.69749 1.16457 1.36667 1.19349 0.86177 0.79898 0.81003 0.79175 1.18409 1.19637 1.19950 1.21671 0.98322 0.91355 0.99124 0.92183 0.92061 0.91768 0.90735 0.90202 0.91900 0.87092 0.92925 0.86392 0.88781 0.88594 0.90641 0.84800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 9.80 37.16 0.36 -1.09 16 2 C -0.12 -1.15 5.32 -26.73 -0.14 -1.29 16 3 C 0.23 3.02 2.49 -70.72 -0.18 2.84 16 4 H 0.14 1.89 6.91 -51.93 -0.36 1.53 16 5 C 0.20 2.90 13.91 -20.76 -0.29 2.61 16 6 N -0.43 -6.93 18.54 42.15 0.78 -6.15 16 7 N -0.61 -9.36 2.19 -178.27 -0.39 -9.75 16 8 C 0.06 0.82 7.65 59.84 0.46 1.28 16 9 C 0.57 11.52 7.52 -12.31 -0.09 11.43 16 10 O -0.54 -12.27 15.89 5.32 0.08 -12.18 16 11 C -0.13 -2.86 5.56 -105.04 -0.58 -3.44 16 12 C -0.23 -4.43 7.56 -38.91 -0.29 -4.73 16 13 C -0.10 -2.04 10.01 -39.73 -0.40 -2.44 16 14 C -0.20 -4.61 9.78 -38.81 -0.38 -4.99 16 15 C 0.10 2.48 5.55 -106.87 -0.59 1.89 16 16 C -0.46 -11.79 9.06 -37.73 -0.34 -12.13 16 17 H 0.08 1.97 7.87 -52.48 -0.41 1.56 16 18 C 0.07 1.77 5.26 -17.34 -0.09 1.68 16 19 N -0.80 -20.70 10.82 55.55 0.60 -20.10 16 20 Si 0.91 18.57 29.57 -169.99 -5.03 13.55 16 21 H -0.26 -5.18 7.11 56.52 0.40 -4.78 16 22 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 23 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 24 C -0.08 -2.15 8.19 -38.44 -0.31 -2.47 16 25 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 27 H 0.06 0.74 7.75 -51.93 -0.40 0.34 16 28 H 0.07 0.63 7.50 -51.93 -0.39 0.24 16 29 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.06 0.66 7.18 -51.93 -0.37 0.29 16 31 H 0.11 1.64 4.95 -51.93 -0.26 1.38 16 32 H 0.05 0.61 7.28 -51.93 -0.38 0.23 16 33 H 0.12 1.81 4.13 -52.49 -0.22 1.59 16 34 H 0.09 1.56 8.06 -52.49 -0.42 1.14 16 35 H 0.10 2.03 8.06 -52.49 -0.42 1.61 16 36 H 0.28 6.77 8.30 -40.82 -0.34 6.43 16 37 H 0.13 3.73 5.95 -52.48 -0.31 3.42 16 LS Contribution 314.35 15.07 4.74 4.74 Total: -1.00 -29.09 314.35 -6.44 -35.53 By element: Atomic # 1 Polarization: 9.57 SS G_CDS: -4.35 Total: 5.23 kcal Atomic # 6 Polarization: -7.98 SS G_CDS: -2.87 Total: -10.85 kcal Atomic # 7 Polarization: -37.00 SS G_CDS: 0.99 Total: -36.00 kcal Atomic # 8 Polarization: -12.27 SS G_CDS: 0.08 Total: -12.18 kcal Atomic # 14 Polarization: 18.57 SS G_CDS: -5.03 Total: 13.55 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -29.09 -6.44 -35.53 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594089933.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.697 kcal (2) G-P(sol) polarization free energy of solvation -29.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.531 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds