Wall clock time and date at job start Mon Mar 30 2020 01:02:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47008 * 2 1 4 4 H 1.09001 * 109.46927 * 55.00038 * 3 2 1 5 5 C 1.47202 * 109.47270 * 174.99973 * 3 2 1 6 6 N 3.43548 * 154.82395 * 8.43433 * 2 1 3 7 7 N 1.46500 * 109.46814 * 294.99921 * 3 2 1 8 8 C 1.46495 * 120.00087 * 299.99833 * 7 3 2 9 9 C 1.34774 * 119.99745 * 120.00215 * 7 3 2 10 10 O 1.21550 * 120.00126 * 4.70821 * 9 7 3 11 11 C 1.47885 * 119.99944 * 184.70000 * 9 7 3 12 12 C 1.39925 * 120.02194 * 22.06854 * 11 9 7 13 13 C 1.38333 * 120.35284 * 179.71087 * 12 11 9 14 14 C 1.37746 * 120.41658 * 0.56040 * 13 12 11 15 15 C 1.40755 * 120.03546 * 359.71808 * 14 13 12 16 16 C 1.41441 * 120.17250 * 180.02562 * 15 14 13 17 17 H 1.08003 * 120.00366 * 28.88286 * 16 15 14 18 18 C 1.39937 * 119.99865 * 208.87443 * 16 15 14 19 19 N 1.30830 * 119.99946 * 10.24387 * 18 16 15 20 20 Si 1.86798 * 120.00138 * 190.24636 * 18 16 15 21 21 H 1.48498 * 109.46956 * 359.97438 * 20 18 16 22 22 H 1.48505 * 109.47431 * 119.99736 * 20 18 16 23 23 H 1.48497 * 109.47258 * 239.99974 * 20 18 16 24 24 C 1.38996 * 120.02818 * 202.33550 * 11 9 7 25 25 H 1.09005 * 109.47251 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47213 * 299.99742 * 1 2 3 27 27 H 1.08997 * 109.47189 * 60.00266 * 1 2 3 28 28 H 1.08998 * 109.47456 * 239.99763 * 2 1 3 29 29 H 1.09006 * 109.47259 * 119.99912 * 2 1 3 30 30 H 1.08997 * 109.47401 * 84.51487 * 8 7 3 31 31 H 1.08999 * 109.47194 * 204.51583 * 8 7 3 32 32 H 1.09000 * 109.47571 * 324.51038 * 8 7 3 33 33 H 1.07999 * 119.81876 * 359.97288 * 12 11 9 34 34 H 1.08001 * 119.78994 * 180.25465 * 13 12 11 35 35 H 1.07995 * 119.98181 * 179.73757 * 14 13 12 36 36 H 0.97004 * 119.99894 * 180.02562 * 19 18 16 37 37 H 1.08004 * 120.19815 * 359.97438 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5070 1.4443 0.1210 6 7 4.6391 1.4457 0.2144 7 7 1.6523 2.0974 -1.2518 8 6 2.1138 1.5589 -2.5337 9 6 0.8713 3.1954 -1.2241 10 8 0.5589 3.6924 -0.1598 11 6 0.3944 3.7957 -2.4888 12 6 0.3404 3.0228 -3.6540 13 6 -0.1102 3.5756 -4.8393 14 6 -0.4999 4.8959 -4.8892 15 6 -0.4471 5.6905 -3.7286 16 6 -0.8471 7.0463 -3.7764 17 1 -1.5931 7.3644 -4.4897 18 6 -0.2764 7.9755 -2.8995 19 7 0.7620 7.6412 -2.1772 20 14 -0.9972 9.6932 -2.7600 21 1 -2.1590 9.8183 -3.6763 22 1 -1.4400 9.9323 -1.3628 23 1 0.0348 10.6946 -3.1304 24 6 0.0047 5.1295 -2.5221 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.4431 0.7624 -2.8558 31 1 2.1198 2.3529 -3.2804 32 1 3.1220 1.1607 -2.4188 33 1 0.6482 1.9879 -3.6267 34 1 -0.1520 2.9696 -5.7322 35 1 -0.8465 5.3214 -5.8193 36 1 1.1574 8.2853 -1.5691 37 1 0.0484 5.7308 -1.6260 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594089933.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:48 Heat of formation + Delta-G solvation = 13.086897 kcal Electronic energy + Delta-G solvation = -20491.376095 eV Core-core repulsion = 17426.666863 eV Total energy + Delta-G solvation = -3064.709232 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.50011 -39.11533 -38.21731 -36.71542 -35.61807 -34.15309 -31.83740 -31.25850 -29.19067 -27.79420 -27.03177 -24.15627 -22.78741 -22.56358 -20.84941 -19.38154 -18.97780 -17.84702 -17.46818 -16.68682 -16.61261 -16.23804 -15.43248 -15.14768 -14.97125 -14.77613 -14.50529 -14.45779 -14.19839 -13.88763 -13.79641 -13.59526 -13.22264 -13.04458 -12.88012 -12.77610 -12.56540 -12.29319 -12.14494 -11.95959 -11.90134 -11.76837 -11.33172 -11.09746 -10.70281 -9.95602 -9.41605 -9.26153 -8.59689 -6.37777 0.41209 1.03686 1.18462 1.37424 1.46921 1.52450 1.56899 2.00437 2.20607 2.25472 2.71735 2.82271 3.67223 3.74142 3.86828 4.11495 4.13833 4.43337 4.51514 4.58358 4.63714 4.72040 4.86715 4.92101 4.93957 5.11569 5.12134 5.17930 5.22901 5.34231 5.43901 5.50474 5.56678 5.84556 5.97180 6.08950 6.21798 6.32080 6.35336 6.63989 6.92365 6.97587 7.14302 8.36303 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.022815 B = 0.005087 C = 0.004656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1226.962963 B = 5502.450995 C = 6011.952484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.113 4.113 3 C 0.234 3.766 4 H 0.130 0.870 5 C 0.222 3.778 6 N -0.459 5.459 7 N -0.599 5.599 8 C 0.054 3.946 9 C 0.571 3.429 10 O -0.578 6.578 11 C -0.140 4.140 12 C -0.201 4.201 13 C -0.103 4.103 14 C -0.208 4.208 15 C 0.063 3.937 16 C -0.499 4.499 17 H 0.080 0.920 18 C 0.027 3.973 19 N -0.839 5.839 20 Si 0.982 3.018 21 H -0.252 1.252 22 H -0.271 1.271 23 H -0.267 1.267 24 C -0.123 4.123 25 H 0.084 0.916 26 H 0.049 0.951 27 H 0.045 0.955 28 H 0.095 0.905 29 H 0.104 0.896 30 H 0.103 0.897 31 H 0.093 0.907 32 H 0.072 0.928 33 H 0.168 0.832 34 H 0.141 0.859 35 H 0.106 0.894 36 H 0.283 0.717 37 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.358 -14.457 -0.069 14.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.152 4.152 3 C 0.127 3.873 4 H 0.147 0.853 5 C -0.097 4.097 6 N -0.136 5.136 7 N -0.333 5.333 8 C -0.087 4.087 9 C 0.364 3.636 10 O -0.458 6.458 11 C -0.144 4.144 12 C -0.220 4.220 13 C -0.120 4.120 14 C -0.228 4.228 15 C 0.061 3.939 16 C -0.529 4.529 17 H 0.099 0.901 18 C -0.185 4.185 19 N -0.467 5.467 20 Si 0.803 3.197 21 H -0.175 1.175 22 H -0.196 1.196 23 H -0.192 1.192 24 C -0.143 4.143 25 H 0.103 0.897 26 H 0.068 0.932 27 H 0.064 0.936 28 H 0.113 0.887 29 H 0.122 0.878 30 H 0.121 0.879 31 H 0.111 0.889 32 H 0.090 0.910 33 H 0.185 0.815 34 H 0.159 0.841 35 H 0.124 0.876 36 H 0.093 0.907 37 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 1.354 -14.105 0.782 14.191 hybrid contribution -0.424 1.492 0.278 1.576 sum 0.930 -12.612 1.060 12.691 Atomic orbital electron populations 1.21715 0.93951 1.03069 1.01868 1.21852 0.97343 0.90353 1.05667 1.18821 0.80054 0.98521 0.89911 0.85295 1.29849 0.95448 0.91887 0.92541 1.81188 1.13871 1.09770 1.08757 1.47643 1.50228 1.27947 1.07442 1.22798 1.00353 1.01174 0.84325 1.18811 0.77131 0.78614 0.89060 1.90677 1.59638 1.62262 1.33234 1.19651 1.06138 0.95093 0.93471 1.21883 1.07357 1.01414 0.91353 1.21013 0.98357 0.94438 0.98237 1.21504 1.08533 0.96018 0.96767 1.17931 0.90989 0.93835 0.91141 1.19867 1.21910 0.93290 1.17843 0.90148 1.26767 0.93568 1.05173 0.93034 1.69865 1.18153 1.37943 1.20694 0.85146 0.79314 0.76180 0.79016 1.17544 1.19623 1.19190 1.21444 1.01761 0.93018 0.98117 0.89704 0.93156 0.93607 0.88683 0.87789 0.87941 0.88850 0.90978 0.81533 0.84118 0.87608 0.90686 0.88544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.41 9.80 71.98 0.71 -1.70 16 2 C -0.11 -1.66 5.32 30.59 0.16 -1.49 16 3 C 0.23 5.51 2.49 43.19 0.11 5.62 16 4 H 0.13 3.43 6.91 -2.39 -0.02 3.41 16 5 C 0.22 5.89 13.91 89.44 1.24 7.14 16 6 N -0.46 -14.21 18.54 20.01 0.37 -13.84 16 7 N -0.60 -17.08 2.19 -836.21 -1.83 -18.91 16 8 C 0.05 1.16 7.65 127.77 0.98 2.14 16 9 C 0.57 22.96 7.52 86.80 0.65 23.61 16 10 O -0.58 -27.37 15.89 -3.87 -0.06 -27.44 16 11 C -0.14 -6.18 5.56 -20.13 -0.11 -6.29 16 12 C -0.20 -7.08 7.56 22.70 0.17 -6.91 16 13 C -0.10 -3.73 10.01 22.18 0.22 -3.50 16 14 C -0.21 -9.32 9.78 22.77 0.22 -9.10 16 15 C 0.06 3.34 5.55 -21.32 -0.12 3.22 16 16 C -0.50 -26.95 9.06 23.47 0.21 -26.73 16 17 H 0.08 4.13 7.87 -2.91 -0.02 4.10 16 18 C 0.03 1.42 5.26 85.25 0.45 1.87 16 19 N -0.84 -46.63 10.82 21.82 0.24 -46.40 16 20 Si 0.98 39.86 29.57 68.60 2.03 41.88 16 21 H -0.25 -9.73 7.11 99.48 0.71 -9.03 16 22 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 23 H -0.27 -10.39 7.11 99.48 0.71 -9.68 16 24 C -0.12 -6.58 8.19 23.01 0.19 -6.39 16 25 H 0.08 0.98 8.14 -2.38 -0.02 0.96 16 26 H 0.05 0.92 8.14 -2.39 -0.02 0.91 16 27 H 0.04 0.92 7.75 -2.39 -0.02 0.90 16 28 H 0.09 1.07 7.50 -2.39 -0.02 1.05 16 29 H 0.10 1.12 8.14 -2.38 -0.02 1.10 16 30 H 0.10 1.47 7.18 -2.39 -0.02 1.46 16 31 H 0.09 2.39 4.95 -2.39 -0.01 2.38 16 32 H 0.07 1.35 7.28 -2.39 -0.02 1.33 16 33 H 0.17 4.19 4.13 -2.91 -0.01 4.18 16 34 H 0.14 3.86 8.06 -2.91 -0.02 3.83 16 35 H 0.11 4.40 8.06 -2.91 -0.02 4.38 16 36 H 0.28 14.53 8.30 -92.71 -0.77 13.77 16 37 H 0.10 5.84 5.95 -2.91 -0.02 5.83 16 Total: -1.00 -69.40 314.35 6.92 -62.48 By element: Atomic # 1 Polarization: 19.64 SS G_CDS: 1.10 Total: 20.73 kcal Atomic # 6 Polarization: -23.61 SS G_CDS: 5.09 Total: -18.52 kcal Atomic # 7 Polarization: -77.92 SS G_CDS: -1.23 Total: -79.14 kcal Atomic # 8 Polarization: -27.37 SS G_CDS: -0.06 Total: -27.44 kcal Atomic # 14 Polarization: 39.86 SS G_CDS: 2.03 Total: 41.88 kcal Total: -69.40 6.92 -62.48 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594089933.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.569 kcal (2) G-P(sol) polarization free energy of solvation -69.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.482 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds