Wall clock time and date at job start Mon Mar 30 2020 01:32:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.46952 * 2 1 4 4 C 1.53002 * 109.47004 * 239.99991 * 2 1 3 5 5 C 1.50695 * 109.46997 * 65.00154 * 4 2 1 6 6 C 1.38361 * 119.84824 * 89.99898 * 5 4 2 7 7 C 1.37951 * 120.15496 * 179.70345 * 6 5 4 8 8 C 1.39634 * 119.83982 * 0.26974 * 7 6 5 9 9 C 1.43202 * 120.14850 * 180.02562 * 8 7 6 10 10 N 7.49818 * 80.07624 * 292.28328 * 2 1 3 11 11 C 1.39626 * 119.70358 * 0.02562 * 8 7 6 12 12 C 1.37947 * 119.84436 * 359.97438 * 11 8 7 13 13 C 1.50703 * 109.47017 * 120.00083 * 2 1 3 14 14 O 1.21293 * 119.99559 * 119.99970 * 13 2 1 15 15 N 1.34774 * 119.99886 * 300.00047 * 13 2 1 16 16 C 1.46495 * 120.00217 * 0.02562 * 15 13 2 17 17 C 1.37104 * 119.99699 * 179.97438 * 15 13 2 18 18 H 1.07994 * 119.99860 * 22.61112 * 17 15 13 19 19 C 1.38945 * 119.99853 * 202.60174 * 17 15 13 20 20 N 1.31409 * 120.00319 * 10.42359 * 19 17 15 21 21 Si 1.86808 * 119.99939 * 190.42311 * 19 17 15 22 22 H 1.48499 * 109.47159 * 90.00371 * 21 19 17 23 23 H 1.48501 * 109.46979 * 210.00571 * 21 19 17 24 24 H 1.48496 * 109.47051 * 330.00105 * 21 19 17 25 25 H 1.08994 * 109.47035 * 299.99767 * 1 2 3 26 26 H 1.09000 * 109.46977 * 60.00418 * 1 2 3 27 27 H 1.09007 * 109.46670 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47132 * 304.99753 * 4 2 1 29 29 H 1.09006 * 109.46676 * 185.00068 * 4 2 1 30 30 H 1.08003 * 119.92427 * 359.97345 * 6 5 4 31 31 H 1.07994 * 120.08294 * 180.29401 * 7 6 5 32 32 H 1.08005 * 120.08063 * 179.97438 * 11 8 7 33 33 H 1.08003 * 119.92563 * 180.02562 * 12 11 8 34 34 H 1.09006 * 109.46939 * 93.38682 * 16 15 13 35 35 H 1.08998 * 109.47030 * 213.38910 * 16 15 13 36 36 H 1.08996 * 109.47301 * 333.38953 * 16 15 13 37 37 H 0.96995 * 120.00398 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.6414 0.0570 -2.4765 6 6 2.4846 1.0332 -2.9770 7 6 2.1288 1.7453 -4.1036 8 6 0.9117 1.4828 -4.7358 9 6 0.5360 2.2176 -5.9061 10 7 0.2378 2.8007 -6.8344 11 6 0.0628 0.5006 -4.2219 12 6 0.4312 -0.2039 -3.0945 13 6 2.0324 -0.7104 1.2305 14 8 2.7297 -1.6966 1.1191 15 7 1.7067 -0.2500 2.4546 16 6 0.8641 0.9408 2.5890 17 6 2.1633 -0.8967 3.5740 18 1 3.0437 -1.5195 3.5164 19 6 1.4935 -0.7505 4.7825 20 7 0.3169 -0.1662 4.8151 21 14 2.2655 -1.3845 6.3610 22 1 3.0910 -0.3127 6.9735 23 1 1.1953 -1.7875 7.3083 24 1 3.1239 -2.5572 6.0559 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0278 -0.0005 28 1 1.6054 -1.7198 -1.2951 29 1 3.1264 -0.7995 -1.2055 30 1 3.4257 1.2352 -2.4869 31 1 2.7900 2.5036 -4.4960 32 1 -0.8802 0.2929 -4.7058 33 1 -0.2242 -0.9642 -2.6961 34 1 -0.1791 0.6389 2.6830 35 1 1.1623 1.4986 3.4767 36 1 0.9819 1.5707 1.7074 37 1 -0.1509 -0.0645 5.6587 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594256843.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:55 Heat of formation + Delta-G solvation = 19.530126 kcal Electronic energy + Delta-G solvation = -19932.889938 eV Core-core repulsion = 16868.460105 eV Total energy + Delta-G solvation = -3064.429833 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.90931 -38.68733 -36.71844 -34.91683 -34.31636 -31.86353 -31.26784 -30.70445 -27.15434 -26.04870 -24.98264 -23.34387 -22.80636 -21.28838 -19.06536 -18.52230 -16.91092 -16.45881 -15.72021 -15.24894 -14.77046 -14.53603 -14.36151 -14.28681 -14.10726 -13.71547 -13.42743 -13.10454 -12.98583 -12.85149 -12.37389 -12.06422 -11.74295 -11.67695 -11.51420 -11.21621 -11.15843 -10.96520 -10.92669 -10.61635 -10.45585 -10.30373 -10.21979 -9.17426 -9.01578 -8.82019 -8.31261 -7.69070 -6.31544 -3.89104 0.62749 1.19395 2.48300 2.79223 3.15290 3.24202 3.29507 3.71045 3.72482 3.88855 4.12941 4.66373 4.67891 4.70671 5.06390 5.10605 5.21400 5.25657 5.35598 5.49784 5.56727 5.67806 5.79172 5.93983 6.04018 6.10173 6.12629 6.20779 6.25706 6.37200 6.51669 6.54503 6.68531 6.71654 6.88398 7.23565 7.29788 7.55591 8.12816 8.47796 9.18298 9.42845 9.98046 10.71595 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.046032 B = 0.003487 C = 0.003400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 608.131469 B = 8028.987577 C = 8233.218783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.093 4.093 3 H 0.081 0.919 4 C -0.066 4.066 5 C -0.034 4.034 6 C -0.120 4.120 7 C -0.067 4.067 8 C -0.048 4.048 9 C 0.261 3.739 10 N -0.431 5.431 11 C -0.068 4.068 12 C -0.117 4.117 13 C 0.450 3.550 14 O -0.592 6.592 15 N -0.445 5.445 16 C 0.112 3.888 17 C -0.305 4.305 18 H 0.098 0.902 19 C 0.030 3.970 20 N -0.885 5.885 21 Si 0.926 3.074 22 H -0.278 1.278 23 H -0.284 1.284 24 H -0.269 1.269 25 H 0.075 0.925 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.081 0.919 29 H 0.083 0.917 30 H 0.134 0.866 31 H 0.130 0.870 32 H 0.130 0.870 33 H 0.135 0.865 34 H 0.062 0.938 35 H 0.064 0.936 36 H 0.029 0.971 37 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.643 3.766 -12.011 12.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.115 4.115 3 H 0.099 0.901 4 C -0.104 4.104 5 C -0.035 4.035 6 C -0.138 4.138 7 C -0.088 4.088 8 C -0.051 4.051 9 C -0.054 4.054 10 N -0.106 5.106 11 C -0.089 4.089 12 C -0.135 4.135 13 C 0.238 3.762 14 O -0.477 6.477 15 N -0.164 5.164 16 C -0.032 4.032 17 C -0.434 4.434 18 H 0.116 0.884 19 C -0.173 4.173 20 N -0.524 5.524 21 Si 0.753 3.247 22 H -0.204 1.204 23 H -0.210 1.210 24 H -0.194 1.194 25 H 0.094 0.906 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.100 0.900 29 H 0.102 0.898 30 H 0.152 0.848 31 H 0.148 0.852 32 H 0.148 0.852 33 H 0.153 0.847 34 H 0.081 0.919 35 H 0.083 0.917 36 H 0.047 0.953 37 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -0.916 4.249 -13.321 14.012 hybrid contribution 0.227 -0.322 1.286 1.345 sum -0.689 3.927 -12.035 12.678 Atomic orbital electron populations 1.22113 0.93948 1.02581 1.02795 1.21055 0.97095 0.99900 0.93465 0.90052 1.20512 1.02500 0.98181 0.89197 1.20402 0.93260 0.94333 0.95480 1.21081 1.00592 0.96038 0.96072 1.21136 0.94274 0.98567 0.94791 1.15967 0.97362 0.99181 0.92633 1.25815 0.93419 0.93217 0.92930 1.81243 1.08287 1.09712 1.11362 1.21145 0.98526 0.93665 0.95517 1.21106 0.96647 1.00529 0.95230 1.19972 0.85766 0.86297 0.84173 1.90509 1.42502 1.28432 1.86285 1.43554 1.44362 1.23931 1.04505 1.21643 0.95899 0.87012 0.98615 1.19666 1.10438 1.27585 0.85663 0.88423 1.25331 0.94980 0.97225 0.99748 1.69981 1.12119 1.43379 1.26960 0.85926 0.78596 0.79228 0.80965 1.20424 1.20966 1.19396 0.90578 0.92527 0.92531 0.90026 0.89831 0.84786 0.85231 0.85215 0.84714 0.91935 0.91695 0.95262 0.92300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.32 8.35 37.16 0.31 -2.01 16 2 C -0.09 -1.53 1.90 -91.77 -0.17 -1.71 16 3 H 0.08 1.23 7.41 -51.93 -0.38 0.85 16 4 C -0.07 -0.93 4.18 -27.88 -0.12 -1.05 16 5 C -0.03 -0.37 4.73 -104.53 -0.49 -0.87 16 6 C -0.12 -1.16 9.68 -39.64 -0.38 -1.55 16 7 C -0.07 -0.59 9.76 -39.17 -0.38 -0.98 16 8 C -0.05 -0.46 5.73 -106.93 -0.61 -1.07 16 9 C 0.26 2.87 15.33 -22.47 -0.34 2.52 16 10 N -0.43 -5.66 18.54 41.84 0.78 -4.88 16 11 C -0.07 -0.60 9.76 -39.17 -0.38 -0.98 16 12 C -0.12 -1.13 7.92 -39.64 -0.31 -1.45 16 13 C 0.45 10.26 7.03 -10.98 -0.08 10.19 16 14 O -0.59 -15.54 15.61 5.55 0.09 -15.45 16 15 N -0.45 -10.94 3.02 -122.20 -0.37 -11.31 16 16 C 0.11 2.38 7.04 59.84 0.42 2.80 16 17 C -0.31 -8.31 9.29 -14.93 -0.14 -8.45 16 18 H 0.10 2.79 7.40 -52.49 -0.39 2.40 16 19 C 0.03 0.78 5.14 -17.47 -0.09 0.69 16 20 N -0.88 -22.97 10.55 55.50 0.59 -22.39 16 21 Si 0.93 20.42 29.57 -169.99 -5.03 15.39 16 22 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 23 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 24 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 25 H 0.08 1.21 4.59 -51.93 -0.24 0.97 16 26 H 0.06 0.68 6.25 -51.93 -0.32 0.35 16 27 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 28 H 0.08 1.20 8.08 -51.93 -0.42 0.78 16 29 H 0.08 1.24 7.90 -51.93 -0.41 0.83 16 30 H 0.13 1.16 8.06 -52.48 -0.42 0.73 16 31 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 32 H 0.13 0.91 8.06 -52.48 -0.42 0.49 16 33 H 0.14 1.18 8.02 -52.48 -0.42 0.76 16 34 H 0.06 1.38 6.50 -51.93 -0.34 1.04 16 35 H 0.06 1.48 7.12 -51.93 -0.37 1.11 16 36 H 0.03 0.51 5.75 -51.93 -0.30 0.21 16 37 H 0.27 6.59 8.31 -40.82 -0.34 6.25 16 LS Contribution 314.09 15.07 4.73 4.73 Total: -1.00 -30.68 314.09 -6.41 -37.09 By element: Atomic # 1 Polarization: 5.14 SS G_CDS: -4.42 Total: 0.72 kcal Atomic # 6 Polarization: -1.12 SS G_CDS: -2.78 Total: -3.90 kcal Atomic # 7 Polarization: -39.57 SS G_CDS: 0.99 Total: -38.58 kcal Atomic # 8 Polarization: -15.54 SS G_CDS: 0.09 Total: -15.45 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.03 Total: 15.39 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -30.68 -6.41 -37.09 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594256843.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.620 kcal (2) G-P(sol) polarization free energy of solvation -30.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.090 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds