Wall clock time and date at job start Mon Mar 30 2020 01:32:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08997 * 109.47109 * 2 1 4 4 C 1.52991 * 109.46898 * 120.00721 * 2 1 3 5 5 C 1.50703 * 109.47308 * 294.99811 * 4 2 1 6 6 C 1.38366 * 119.84295 * 269.72699 * 5 4 2 7 7 C 1.37951 * 120.14876 * 180.27300 * 6 5 4 8 8 C 1.39636 * 119.84432 * 0.02562 * 7 6 5 9 9 C 1.43201 * 120.14574 * 179.97438 * 8 7 6 10 10 N 7.49916 * 80.09699 * 67.75891 * 2 1 3 11 11 C 1.39632 * 119.70215 * 359.97438 * 8 7 6 12 12 C 1.37947 * 119.84492 * 359.97438 * 11 8 7 13 13 C 1.50704 * 109.46746 * 240.00601 * 2 1 3 14 14 O 1.21297 * 119.99667 * 247.62560 * 13 2 1 15 15 N 1.34776 * 119.99895 * 67.62443 * 13 2 1 16 16 C 1.46507 * 119.99461 * 183.60782 * 15 13 2 17 17 C 1.37087 * 120.00397 * 3.60669 * 15 13 2 18 18 H 1.08003 * 120.00003 * 346.95597 * 17 15 13 19 19 C 1.38956 * 119.99989 * 166.95562 * 17 15 13 20 20 N 1.31404 * 119.99843 * 8.54234 * 19 17 15 21 21 Si 1.86800 * 119.99716 * 188.53926 * 19 17 15 22 22 H 1.48501 * 109.47017 * 60.00347 * 21 19 17 23 23 H 1.48506 * 109.46963 * 180.02562 * 21 19 17 24 24 H 1.48498 * 109.47612 * 300.00312 * 21 19 17 25 25 H 1.09006 * 109.46921 * 64.67573 * 1 2 3 26 26 H 1.08998 * 109.47007 * 184.67387 * 1 2 3 27 27 H 1.08997 * 109.47189 * 304.67904 * 1 2 3 28 28 H 1.09001 * 109.47038 * 174.99685 * 4 2 1 29 29 H 1.09001 * 109.47703 * 54.99585 * 4 2 1 30 30 H 1.07998 * 119.92979 * 0.25249 * 6 5 4 31 31 H 1.07996 * 120.07665 * 180.02562 * 7 6 5 32 32 H 1.07993 * 120.07800 * 179.97438 * 11 8 7 33 33 H 1.07994 * 119.92609 * 180.02562 * 12 11 8 34 34 H 1.08999 * 109.47430 * 5.46772 * 16 15 13 35 35 H 1.08998 * 109.46949 * 125.47009 * 16 15 13 36 36 H 1.09003 * 109.46983 * 245.47054 * 16 15 13 37 37 H 0.97001 * 119.99822 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 1.2491 5 6 1.6413 0.0568 2.4766 6 6 2.4873 1.0289 2.9804 7 6 2.1312 1.7411 4.1069 8 6 0.9142 1.4786 4.7391 9 6 0.5383 2.2136 5.9092 10 7 0.2404 2.7962 6.8378 11 6 0.0653 0.4962 4.2253 12 6 0.4335 -0.2077 3.0974 13 6 2.0323 -0.7103 -1.2306 14 8 2.6114 -1.7708 -1.1247 15 7 1.8380 -0.1672 -2.4487 16 6 2.2555 -0.8945 -3.6500 17 6 1.2497 1.0657 -2.5636 18 1 0.7539 1.5089 -1.7125 19 6 1.2911 1.7451 -3.7750 20 7 1.7428 1.1419 -4.8514 21 14 0.7047 3.5160 -3.8731 22 1 1.5196 4.3585 -2.9612 23 1 0.8508 4.0093 -5.2662 24 1 -0.7227 3.5879 -3.4701 25 1 -0.3633 0.4396 -0.9290 26 1 -0.3633 -1.0242 0.0837 27 1 -0.3633 0.5847 0.8451 28 1 3.1263 -0.7996 1.2054 29 1 1.6053 -1.7199 1.2950 30 1 3.4286 1.2304 2.4909 31 1 2.7922 2.4999 4.4989 32 1 -0.8771 0.2879 4.7096 33 1 -0.2222 -0.9675 2.6986 34 1 2.6096 -1.8865 -3.3695 35 1 1.4088 -0.9896 -4.3297 36 1 3.0589 -0.3483 -4.1445 37 1 1.7714 1.6161 -5.6972 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594256844.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:58 Heat of formation + Delta-G solvation = 5.741120 kcal Electronic energy + Delta-G solvation = -20061.523307 eV Core-core repulsion = 16996.495539 eV Total energy + Delta-G solvation = -3065.027769 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.95218 -40.13747 -37.67576 -36.75745 -35.62516 -33.35592 -32.11662 -31.89574 -28.51777 -27.76736 -26.59831 -24.39349 -23.55296 -22.21787 -20.66916 -19.82059 -18.69664 -18.00472 -16.61218 -16.39312 -16.13508 -15.99256 -15.73946 -15.40409 -15.06795 -14.82236 -14.60807 -14.30665 -14.03612 -13.84850 -13.72015 -13.34498 -13.23279 -13.03779 -12.97199 -12.64805 -12.58160 -12.22013 -12.14622 -12.02537 -11.94950 -11.75640 -11.61017 -10.94440 -10.19037 -9.85450 -9.83476 -9.59982 -8.18545 -5.84138 -0.15173 0.50459 1.47774 1.50787 1.59838 1.63431 1.96299 2.10103 2.32396 2.89720 2.93249 3.12627 3.20923 3.93208 3.95055 4.06716 4.18810 4.30034 4.41569 4.51386 4.58983 4.67658 4.86852 4.90981 4.97895 5.07785 5.15604 5.18270 5.19277 5.35658 5.39899 5.42140 5.42768 5.47704 5.62053 5.77592 5.86802 5.95765 6.46508 6.47365 7.16598 7.67047 8.06016 8.77660 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.020871 B = 0.004574 C = 0.003989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.249466 B = 6120.310527 C = 7017.191338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.077 4.077 3 H 0.090 0.910 4 C -0.057 4.057 5 C -0.042 4.042 6 C -0.123 4.123 7 C -0.061 4.061 8 C -0.052 4.052 9 C 0.284 3.716 10 N -0.471 5.471 11 C -0.060 4.060 12 C -0.117 4.117 13 C 0.444 3.556 14 O -0.645 6.645 15 N -0.461 5.461 16 C 0.135 3.865 17 C -0.347 4.347 18 H 0.125 0.875 19 C -0.012 4.012 20 N -0.907 5.907 21 Si 0.989 3.011 22 H -0.265 1.265 23 H -0.288 1.288 24 H -0.261 1.261 25 H 0.058 0.942 26 H 0.053 0.947 27 H 0.085 0.915 28 H 0.067 0.933 29 H 0.074 0.926 30 H 0.140 0.860 31 H 0.148 0.852 32 H 0.151 0.849 33 H 0.147 0.853 34 H 0.030 0.970 35 H 0.047 0.953 36 H 0.052 0.948 37 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.720 1.541 12.667 13.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.098 4.098 3 H 0.108 0.892 4 C -0.094 4.094 5 C -0.043 4.043 6 C -0.141 4.141 7 C -0.081 4.081 8 C -0.055 4.055 9 C -0.030 4.030 10 N -0.147 5.147 11 C -0.080 4.080 12 C -0.135 4.135 13 C 0.234 3.766 14 O -0.535 6.535 15 N -0.178 5.178 16 C -0.008 4.008 17 C -0.474 4.474 18 H 0.143 0.857 19 C -0.213 4.213 20 N -0.547 5.547 21 Si 0.813 3.187 22 H -0.189 1.189 23 H -0.214 1.214 24 H -0.186 1.186 25 H 0.077 0.923 26 H 0.073 0.927 27 H 0.104 0.896 28 H 0.086 0.914 29 H 0.093 0.907 30 H 0.158 0.842 31 H 0.166 0.834 32 H 0.169 0.831 33 H 0.164 0.836 34 H 0.048 0.952 35 H 0.066 0.934 36 H 0.070 0.930 37 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -2.888 1.993 13.900 14.336 hybrid contribution 0.112 0.407 -1.208 1.280 sum -2.776 2.400 12.692 13.212 Atomic orbital electron populations 1.21873 0.92449 1.02283 1.03266 1.20887 0.98143 0.99896 0.90848 0.89181 1.20362 1.01319 0.98061 0.89703 1.20179 0.94422 0.94921 0.94771 1.21176 1.00805 0.95846 0.96275 1.21291 0.94262 0.98409 0.94134 1.16055 0.97824 0.99397 0.92236 1.25927 0.92269 0.92311 0.92524 1.81265 1.09677 1.11095 1.12702 1.21323 0.99017 0.92700 0.94948 1.21193 0.96221 1.00793 0.95286 1.20897 0.83424 0.86684 0.85607 1.90483 1.49403 1.26549 1.87111 1.43968 1.51640 1.17349 1.04883 1.21274 0.99887 0.93089 0.86581 1.20292 1.34460 0.93084 0.99562 0.85715 1.26247 0.96767 1.03573 0.94716 1.70321 1.46253 1.37760 1.00319 0.85038 0.79224 0.77229 0.77256 1.18937 1.21397 1.18581 0.92329 0.92741 0.89594 0.91423 0.90693 0.84178 0.83438 0.83109 0.83565 0.95152 0.93398 0.92983 0.92315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.16 8.19 71.98 0.59 -3.57 16 2 C -0.08 -2.59 1.87 -11.54 -0.02 -2.61 16 3 H 0.09 3.01 7.54 -2.39 -0.02 2.99 16 4 C -0.06 -1.58 4.14 29.85 0.12 -1.46 16 5 C -0.04 -0.88 4.72 -19.80 -0.09 -0.98 16 6 C -0.12 -2.29 9.68 22.23 0.22 -2.08 16 7 C -0.06 -0.99 9.76 22.54 0.22 -0.77 16 8 C -0.05 -0.89 5.73 -21.36 -0.12 -1.01 16 9 C 0.28 5.87 15.33 88.33 1.35 7.23 16 10 N -0.47 -12.08 18.54 19.00 0.35 -11.73 16 11 C -0.06 -0.91 9.76 22.54 0.22 -0.69 16 12 C -0.12 -2.02 8.06 22.23 0.18 -1.84 16 13 C 0.44 20.27 6.94 87.66 0.61 20.88 16 14 O -0.65 -32.90 15.36 -3.08 -0.05 -32.95 16 15 N -0.46 -22.89 3.03 -658.86 -1.99 -24.88 16 16 C 0.14 6.88 8.87 127.77 1.13 8.02 16 17 C -0.35 -16.53 8.34 84.04 0.70 -15.83 16 18 H 0.13 5.32 4.86 -2.91 -0.01 5.30 16 19 C -0.01 -0.60 5.46 84.93 0.46 -0.13 16 20 N -0.91 -46.72 9.57 21.66 0.21 -46.51 16 21 Si 0.99 37.67 29.56 68.60 2.03 39.70 16 22 H -0.26 -9.70 7.11 99.48 0.71 -8.99 16 23 H -0.29 -11.16 7.11 99.48 0.71 -10.45 16 24 H -0.26 -9.42 7.11 99.48 0.71 -8.72 16 25 H 0.06 1.99 5.68 -2.38 -0.01 1.97 16 26 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 27 H 0.09 1.98 6.58 -2.39 -0.02 1.96 16 28 H 0.07 2.04 8.01 -2.39 -0.02 2.02 16 29 H 0.07 2.15 8.07 -2.39 -0.02 2.13 16 30 H 0.14 2.42 8.06 -2.91 -0.02 2.39 16 31 H 0.15 1.84 8.06 -2.91 -0.02 1.82 16 32 H 0.15 1.65 8.06 -2.91 -0.02 1.63 16 33 H 0.15 2.17 8.02 -2.91 -0.02 2.14 16 34 H 0.03 1.51 6.94 -2.39 -0.02 1.49 16 35 H 0.05 2.49 7.30 -2.39 -0.02 2.47 16 36 H 0.05 2.76 6.87 -2.39 -0.02 2.75 16 37 H 0.27 13.12 8.31 -92.71 -0.77 12.35 16 Total: -1.00 -61.60 314.70 7.20 -54.40 By element: Atomic # 1 Polarization: 15.71 SS G_CDS: 1.09 Total: 16.80 kcal Atomic # 6 Polarization: -0.40 SS G_CDS: 5.57 Total: 5.17 kcal Atomic # 7 Polarization: -81.68 SS G_CDS: -1.43 Total: -83.12 kcal Atomic # 8 Polarization: -32.90 SS G_CDS: -0.05 Total: -32.95 kcal Atomic # 14 Polarization: 37.67 SS G_CDS: 2.03 Total: 39.70 kcal Total: -61.60 7.20 -54.40 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594256844.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.137 kcal (2) G-P(sol) polarization free energy of solvation -61.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.396 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds