Wall clock time and date at job start Mon Mar 30 2020 02:04:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86800 * 120.00105 * 2 1 4 4 H 1.48501 * 109.47483 * 270.00407 * 3 2 1 5 5 H 1.48498 * 109.47011 * 30.00271 * 3 2 1 6 6 H 1.48502 * 109.47495 * 149.99894 * 3 2 1 7 7 C 1.38811 * 120.00081 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00195 * 0.02562 * 7 2 1 9 9 N 1.36943 * 120.00012 * 180.02562 * 7 2 1 10 10 C 1.46498 * 119.99752 * 180.27737 * 9 7 2 11 11 C 1.50700 * 109.46769 * 179.72432 * 10 9 7 12 12 C 1.35352 * 126.75361 * 94.71485 * 11 10 9 13 13 N 1.35317 * 106.17693 * 179.84844 * 12 11 10 14 14 C 1.46494 * 125.87155 * 180.11507 * 13 12 11 15 15 C 1.52996 * 109.47251 * 125.32590 * 14 13 12 16 16 C 1.50696 * 109.47118 * 180.02562 * 15 14 13 17 17 C 1.38232 * 120.00254 * 269.72751 * 16 15 14 18 18 C 1.38230 * 120.00377 * 179.76841 * 17 16 15 19 19 C 1.38241 * 119.99822 * 0.50245 * 18 17 16 20 20 C 1.38233 * 119.99910 * 359.75008 * 19 18 17 21 21 C 1.38234 * 120.00013 * 359.97438 * 20 19 18 22 22 N 1.28721 * 108.25949 * 0.41126 * 13 12 11 23 23 N 1.28636 * 110.17920 * 359.73997 * 22 13 12 24 24 H 0.97008 * 120.00329 * 359.97438 * 1 2 3 25 25 H 0.97001 * 119.99803 * 359.97438 * 9 7 2 26 26 H 1.09004 * 109.46963 * 299.72226 * 10 9 7 27 27 H 1.08994 * 109.47567 * 59.72378 * 10 9 7 28 28 H 1.08002 * 126.90994 * 359.97438 * 12 11 10 29 29 H 1.08998 * 109.46924 * 245.32891 * 14 13 12 30 30 H 1.09000 * 109.46687 * 5.32699 * 14 13 12 31 31 H 1.09006 * 109.46841 * 300.00288 * 15 14 13 32 32 H 1.08997 * 109.47339 * 59.99904 * 15 14 13 33 33 H 1.08006 * 119.99627 * 359.97438 * 17 16 15 34 34 H 1.08002 * 120.00350 * 180.22920 * 18 17 16 35 35 H 1.07999 * 120.00019 * 179.72962 * 19 18 17 36 36 H 1.07997 * 119.99951 * 179.97438 * 20 19 18 37 37 H 1.07994 * 119.99981 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2021 -0.0005 8 1 1.4702 -2.1375 -0.0014 9 7 3.3796 -1.2021 0.0000 10 6 4.1121 -2.4708 -0.0067 11 6 5.5937 -2.1954 -0.0115 12 6 6.4103 -2.1384 1.0664 13 7 7.6475 -1.8703 0.5883 14 6 8.8637 -1.7187 1.3908 15 6 9.9381 -2.6778 0.8747 16 6 11.1890 -2.5223 1.7006 17 6 12.1573 -1.6107 1.3236 18 6 13.3025 -1.4646 2.0839 19 6 13.4841 -2.2376 3.2155 20 6 12.5182 -3.1529 3.5896 21 6 11.3704 -3.2949 2.8325 22 7 7.5709 -1.7651 -0.6923 23 7 6.3594 -1.9536 -1.0814 24 1 -0.4851 0.8401 0.0004 25 1 3.8646 -0.3620 0.0004 26 1 3.8521 -3.0451 0.8825 27 1 3.8454 -3.0397 -0.8974 28 1 6.1310 -2.2805 2.1000 29 1 9.2245 -0.6931 1.3134 30 1 8.6421 -1.9482 2.4331 31 1 9.5771 -3.7034 0.9521 32 1 10.1597 -2.4483 -0.1676 33 1 12.0176 -1.0102 0.4369 34 1 14.0574 -0.7497 1.7914 35 1 14.3808 -2.1266 3.8071 36 1 12.6603 -3.7571 4.4735 37 1 10.6159 -4.0103 3.1246 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594649400.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:28 Heat of formation + Delta-G solvation = 136.286060 kcal Electronic energy + Delta-G solvation = -19134.142496 eV Core-core repulsion = 16107.068332 eV Total energy + Delta-G solvation = -3027.074164 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.133 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -43.04901 -39.74891 -36.00559 -34.83295 -32.81059 -31.85372 -31.32605 -30.29707 -29.05912 -26.10833 -25.02734 -23.02056 -22.41986 -21.83967 -21.40070 -20.43085 -17.87692 -17.40362 -16.90465 -16.38481 -15.68703 -15.45834 -14.70671 -14.52458 -14.28262 -14.03070 -13.76436 -13.64725 -13.38047 -12.99838 -12.71883 -12.52984 -12.18138 -11.87213 -11.56641 -11.48773 -11.33582 -11.04292 -10.85259 -10.51939 -10.14770 -9.94602 -9.56857 -9.35727 -9.17220 -8.97088 -8.87058 -7.20819 -5.73644 -3.09103 0.85675 0.96544 1.75974 2.37046 2.80246 3.32973 3.41813 3.46980 3.49587 4.17412 4.30603 4.41517 4.53605 4.60526 4.63646 4.67106 4.71507 4.83661 4.99072 5.07098 5.17722 5.30845 5.39540 5.43939 5.58378 5.61615 5.62820 5.76211 5.79624 6.02266 6.08978 6.15916 6.30681 6.55366 6.59545 6.67929 6.72408 8.01141 8.45152 8.74962 9.23386 9.96046 10.16295 11.44514 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.036322 B = 0.002981 C = 0.002921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.691217 B = 9390.613250 C = 9583.960264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.006 3.994 3 Si 0.884 3.116 4 H -0.283 1.283 5 H -0.291 1.291 6 H -0.280 1.280 7 C -0.243 4.243 8 H 0.093 0.907 9 N -0.750 5.750 10 C 0.238 3.762 11 C -0.013 4.013 12 C -0.043 4.043 13 N -0.300 5.300 14 C 0.125 3.875 15 C -0.092 4.092 16 C -0.085 4.085 17 C -0.111 4.111 18 C -0.119 4.119 19 C -0.121 4.121 20 C -0.119 4.119 21 C -0.113 4.113 22 N -0.095 5.095 23 N -0.256 5.256 24 H 0.259 0.741 25 H 0.362 0.638 26 H 0.046 0.954 27 H 0.047 0.953 28 H 0.190 0.810 29 H 0.098 0.902 30 H 0.105 0.895 31 H 0.082 0.918 32 H 0.093 0.907 33 H 0.125 0.875 34 H 0.123 0.877 35 H 0.122 0.878 36 H 0.123 0.877 37 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.879 -6.098 8.938 30.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.190 4.190 3 Si 0.715 3.285 4 H -0.210 1.210 5 H -0.217 1.217 6 H -0.206 1.206 7 C -0.372 4.372 8 H 0.111 0.889 9 N -0.396 5.396 10 C 0.109 3.891 11 C -0.151 4.151 12 C -0.194 4.194 13 N -0.094 5.094 14 C 0.003 3.997 15 C -0.130 4.130 16 C -0.085 4.085 17 C -0.129 4.129 18 C -0.137 4.137 19 C -0.139 4.139 20 C -0.137 4.137 21 C -0.132 4.132 22 N -0.074 5.074 23 N -0.123 5.123 24 H 0.070 0.930 25 H 0.195 0.805 26 H 0.064 0.936 27 H 0.065 0.935 28 H 0.207 0.793 29 H 0.116 0.884 30 H 0.123 0.877 31 H 0.101 0.899 32 H 0.111 0.889 33 H 0.143 0.857 34 H 0.141 0.859 35 H 0.140 0.860 36 H 0.141 0.859 37 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 29.428 -5.917 7.644 30.975 hybrid contribution 0.169 1.125 1.175 1.635 sum 29.597 -4.792 8.820 31.252 Atomic orbital electron populations 1.69696 1.05025 1.25818 1.57583 1.24630 0.95202 0.97138 1.01981 0.86547 0.79016 0.85020 0.77935 1.20958 1.21723 1.20610 1.19048 0.80233 0.94900 1.43058 0.88877 1.42667 1.03917 1.01833 1.91191 1.18908 0.80260 0.89827 1.00073 1.22532 0.99031 1.05030 0.88521 1.23481 0.84357 1.09404 1.02130 1.47333 1.08668 1.46550 1.06820 1.22026 0.81265 1.02085 0.94307 1.20839 0.91516 1.00161 1.00474 1.19655 0.95678 0.97233 0.95972 1.21149 0.93790 0.98034 0.99976 1.21191 0.97657 0.99498 0.95307 1.21213 0.99249 0.96339 0.97112 1.21175 0.94106 0.98602 0.99803 1.21118 0.97945 0.99365 0.94724 1.78224 1.16247 1.20273 0.92668 1.75107 0.95948 1.14935 1.26312 0.93045 0.80503 0.93636 0.93475 0.79303 0.88398 0.87653 0.89913 0.88893 0.85693 0.85892 0.86044 0.85905 0.85841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.69 13.97 55.49 0.78 -28.92 16 2 C 0.01 0.19 5.50 -17.43 -0.10 0.09 16 3 Si 0.88 23.00 27.74 -169.99 -4.71 18.28 16 4 H -0.28 -7.42 7.11 56.52 0.40 -7.02 16 5 H -0.29 -7.53 7.11 56.52 0.40 -7.13 16 6 H -0.28 -6.95 6.52 56.52 0.37 -6.58 16 7 C -0.24 -7.01 10.47 -15.06 -0.16 -7.17 16 8 H 0.09 2.82 8.06 -52.49 -0.42 2.39 16 9 N -0.75 -18.72 5.40 -61.09 -0.33 -19.05 16 10 C 0.24 4.85 6.82 -5.19 -0.04 4.82 16 11 C -0.01 -0.24 6.61 -82.78 -0.55 -0.79 16 12 C -0.04 -0.62 11.50 -17.04 -0.20 -0.81 16 13 N -0.30 -3.98 3.44 -61.27 -0.21 -4.19 16 14 C 0.12 1.05 6.44 -4.05 -0.03 1.03 16 15 C -0.09 -0.71 5.47 -27.89 -0.15 -0.87 16 16 C -0.08 -0.62 5.13 -104.63 -0.54 -1.15 16 17 C -0.11 -0.80 9.70 -39.59 -0.38 -1.18 16 18 C -0.12 -0.78 10.05 -39.58 -0.40 -1.18 16 19 C -0.12 -0.76 10.05 -39.58 -0.40 -1.16 16 20 C -0.12 -0.75 10.05 -39.58 -0.40 -1.15 16 21 C -0.11 -0.77 9.70 -39.58 -0.38 -1.15 16 22 N -0.09 -1.60 12.91 60.35 0.78 -0.82 16 23 N -0.26 -5.03 12.41 33.29 0.41 -4.61 16 24 H 0.26 7.85 8.31 -40.82 -0.34 7.51 16 25 H 0.36 9.14 5.52 -40.82 -0.23 8.92 16 26 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.19 2.03 8.06 -52.49 -0.42 1.60 16 29 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.11 0.64 8.07 -51.93 -0.42 0.22 16 31 H 0.08 0.65 8.09 -51.93 -0.42 0.23 16 32 H 0.09 0.82 8.06 -51.93 -0.42 0.40 16 33 H 0.13 0.78 8.06 -52.48 -0.42 0.36 16 34 H 0.12 0.59 8.06 -52.49 -0.42 0.17 16 35 H 0.12 0.53 8.06 -52.49 -0.42 0.11 16 36 H 0.12 0.55 8.06 -52.49 -0.42 0.13 16 37 H 0.12 0.66 8.06 -52.49 -0.42 0.24 16 LS Contribution 322.97 15.07 4.87 4.87 Total: -1.00 -35.19 322.97 -7.01 -42.20 By element: Atomic # 1 Polarization: 7.79 SS G_CDS: -4.88 Total: 2.91 kcal Atomic # 6 Polarization: -6.96 SS G_CDS: -3.71 Total: -10.67 kcal Atomic # 7 Polarization: -59.01 SS G_CDS: 1.43 Total: -57.59 kcal Atomic # 14 Polarization: 23.00 SS G_CDS: -4.71 Total: 18.28 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -35.19 -7.01 -42.20 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594649400.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 178.485 kcal (2) G-P(sol) polarization free energy of solvation -35.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 143.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.199 kcal (6) G-S(sol) free energy of system = (1) + (5) 136.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds