Wall clock time and date at job start Mon Mar 30 2020 02:04:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86800 * 120.00105 * 2 1 4 4 H 1.48501 * 109.47483 * 270.00407 * 3 2 1 5 5 H 1.48498 * 109.47011 * 30.00271 * 3 2 1 6 6 H 1.48502 * 109.47495 * 149.99894 * 3 2 1 7 7 C 1.38811 * 120.00081 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00195 * 0.02562 * 7 2 1 9 9 N 1.36943 * 120.00012 * 180.02562 * 7 2 1 10 10 C 1.46498 * 119.99752 * 180.27737 * 9 7 2 11 11 C 1.50700 * 109.46769 * 179.72432 * 10 9 7 12 12 C 1.35352 * 126.75361 * 94.71485 * 11 10 9 13 13 N 1.35317 * 106.17693 * 179.84844 * 12 11 10 14 14 C 1.46494 * 125.87155 * 180.11507 * 13 12 11 15 15 C 1.52996 * 109.47251 * 125.32590 * 14 13 12 16 16 C 1.50696 * 109.47118 * 180.02562 * 15 14 13 17 17 C 1.38232 * 120.00254 * 269.72751 * 16 15 14 18 18 C 1.38230 * 120.00377 * 179.76841 * 17 16 15 19 19 C 1.38241 * 119.99822 * 0.50245 * 18 17 16 20 20 C 1.38233 * 119.99910 * 359.75008 * 19 18 17 21 21 C 1.38234 * 120.00013 * 359.97438 * 20 19 18 22 22 N 1.28721 * 108.25949 * 0.41126 * 13 12 11 23 23 N 1.28636 * 110.17920 * 359.73997 * 22 13 12 24 24 H 0.97008 * 120.00329 * 359.97438 * 1 2 3 25 25 H 0.97001 * 119.99803 * 359.97438 * 9 7 2 26 26 H 1.09004 * 109.46963 * 299.72226 * 10 9 7 27 27 H 1.08994 * 109.47567 * 59.72378 * 10 9 7 28 28 H 1.08002 * 126.90994 * 359.97438 * 12 11 10 29 29 H 1.08998 * 109.46924 * 245.32891 * 14 13 12 30 30 H 1.09000 * 109.46687 * 5.32699 * 14 13 12 31 31 H 1.09006 * 109.46841 * 300.00288 * 15 14 13 32 32 H 1.08997 * 109.47339 * 59.99904 * 15 14 13 33 33 H 1.08006 * 119.99627 * 359.97438 * 17 16 15 34 34 H 1.08002 * 120.00350 * 180.22920 * 18 17 16 35 35 H 1.07999 * 120.00019 * 179.72962 * 19 18 17 36 36 H 1.07997 * 119.99951 * 179.97438 * 20 19 18 37 37 H 1.07994 * 119.99981 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2021 -0.0005 8 1 1.4702 -2.1375 -0.0014 9 7 3.3796 -1.2021 0.0000 10 6 4.1121 -2.4708 -0.0067 11 6 5.5937 -2.1954 -0.0115 12 6 6.4103 -2.1384 1.0664 13 7 7.6475 -1.8703 0.5883 14 6 8.8637 -1.7187 1.3908 15 6 9.9381 -2.6778 0.8747 16 6 11.1890 -2.5223 1.7006 17 6 12.1573 -1.6107 1.3236 18 6 13.3025 -1.4646 2.0839 19 6 13.4841 -2.2376 3.2155 20 6 12.5182 -3.1529 3.5896 21 6 11.3704 -3.2949 2.8325 22 7 7.5709 -1.7651 -0.6923 23 7 6.3594 -1.9536 -1.0814 24 1 -0.4851 0.8401 0.0004 25 1 3.8646 -0.3620 0.0004 26 1 3.8521 -3.0451 0.8825 27 1 3.8454 -3.0397 -0.8974 28 1 6.1310 -2.2805 2.1000 29 1 9.2245 -0.6931 1.3134 30 1 8.6421 -1.9482 2.4331 31 1 9.5771 -3.7034 0.9521 32 1 10.1597 -2.4483 -0.1676 33 1 12.0176 -1.0102 0.4369 34 1 14.0574 -0.7497 1.7914 35 1 14.3808 -2.1266 3.8071 36 1 12.6603 -3.7571 4.4735 37 1 10.6159 -4.0103 3.1246 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594649400.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:28 Heat of formation + Delta-G solvation = 113.366620 kcal Electronic energy + Delta-G solvation = -19135.136357 eV Core-core repulsion = 16107.068332 eV Total energy + Delta-G solvation = -3028.068026 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.133 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -44.25018 -40.23128 -37.23813 -36.33152 -33.97494 -33.46444 -31.94922 -31.77740 -29.80565 -27.82160 -25.79487 -24.35498 -23.47800 -22.85084 -22.34522 -21.51689 -19.85790 -18.31103 -17.68712 -17.34032 -16.59158 -16.28470 -16.06986 -15.96578 -15.66167 -15.06085 -14.72958 -14.47103 -14.27302 -14.20519 -14.01923 -13.76693 -13.39530 -13.09386 -12.91332 -12.69221 -12.40287 -12.12717 -11.99852 -11.86922 -11.81754 -11.74871 -11.08031 -11.01866 -10.24247 -9.82622 -9.67118 -9.32059 -8.02632 -5.35955 0.35035 0.49652 0.64309 1.34511 1.39936 1.41681 1.44939 1.48047 2.47382 2.84302 3.28057 3.34145 3.58763 3.75881 3.83827 3.86285 3.98773 4.05879 4.17200 4.23282 4.24584 4.31809 4.40100 4.60162 4.62843 4.79991 4.85144 4.92087 5.10485 5.13255 5.16363 5.19861 5.56280 5.63725 5.66291 5.67589 5.75448 6.10666 6.21025 7.05461 7.50386 7.80557 8.00348 9.18535 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.036322 B = 0.002981 C = 0.002921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.691217 B = 9390.613250 C = 9583.960264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.980 5.980 2 C -0.059 4.059 3 Si 0.951 3.049 4 H -0.287 1.287 5 H -0.289 1.289 6 H -0.259 1.259 7 C -0.231 4.231 8 H 0.068 0.932 9 N -0.753 5.753 10 C 0.239 3.761 11 C -0.045 4.045 12 C -0.017 4.017 13 N -0.284 5.284 14 C 0.116 3.884 15 C -0.082 4.082 16 C -0.092 4.092 17 C -0.125 4.125 18 C -0.129 4.129 19 C -0.128 4.128 20 C -0.127 4.127 21 C -0.120 4.120 22 N -0.110 5.110 23 N -0.299 5.299 24 H 0.259 0.741 25 H 0.362 0.638 26 H 0.069 0.931 27 H 0.033 0.967 28 H 0.231 0.769 29 H 0.107 0.893 30 H 0.139 0.861 31 H 0.083 0.917 32 H 0.077 0.923 33 H 0.127 0.873 34 H 0.136 0.864 35 H 0.139 0.861 36 H 0.140 0.860 37 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 31.480 -5.856 10.954 33.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.630 5.630 2 C -0.251 4.251 3 Si 0.779 3.221 4 H -0.214 1.214 5 H -0.215 1.215 6 H -0.184 1.184 7 C -0.361 4.361 8 H 0.086 0.914 9 N -0.399 5.399 10 C 0.112 3.888 11 C -0.184 4.184 12 C -0.168 4.168 13 N -0.078 5.078 14 C -0.003 4.003 15 C -0.120 4.120 16 C -0.092 4.092 17 C -0.144 4.144 18 C -0.147 4.147 19 C -0.146 4.146 20 C -0.145 4.145 21 C -0.138 4.138 22 N -0.089 5.089 23 N -0.166 5.166 24 H 0.068 0.932 25 H 0.195 0.805 26 H 0.087 0.913 27 H 0.051 0.949 28 H 0.248 0.752 29 H 0.125 0.875 30 H 0.157 0.843 31 H 0.101 0.899 32 H 0.096 0.904 33 H 0.145 0.855 34 H 0.154 0.846 35 H 0.157 0.843 36 H 0.158 0.842 37 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 32.105 -5.700 9.660 34.008 hybrid contribution -0.517 0.927 0.593 1.216 sum 31.588 -4.773 10.253 33.551 Atomic orbital electron populations 1.69855 1.06816 1.26639 1.59712 1.25391 0.96043 1.00837 1.02787 0.85470 0.78494 0.80411 0.77717 1.21371 1.21526 1.18380 1.19063 0.82083 0.93908 1.41082 0.91417 1.42700 1.02587 1.03603 1.91020 1.18912 0.81746 0.87862 1.00270 1.22266 0.98199 1.08021 0.89877 1.23950 0.83728 1.06342 1.02827 1.47700 1.09803 1.44216 1.06086 1.22505 0.79644 1.02913 0.95211 1.20700 0.91647 0.99917 0.99729 1.19611 0.95473 0.97813 0.96337 1.21309 0.94264 0.98397 1.00380 1.21435 0.97825 0.99939 0.95451 1.21516 0.99934 0.96023 0.97113 1.21467 0.93915 0.98720 1.00353 1.21331 0.98551 0.99434 0.94511 1.78140 1.15222 1.21023 0.94481 1.75047 0.97113 1.16556 1.27915 0.93235 0.80543 0.91349 0.94880 0.75218 0.87491 0.84317 0.89882 0.90402 0.85486 0.84588 0.84336 0.84186 0.84502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -63.39 13.97 21.65 0.30 -63.09 16 2 C -0.06 -3.54 5.50 84.86 0.47 -3.07 16 3 Si 0.95 47.40 27.74 68.60 1.90 49.30 16 4 H -0.29 -14.39 7.11 99.48 0.71 -13.69 16 5 H -0.29 -14.21 7.11 99.48 0.71 -13.50 16 6 H -0.26 -11.86 6.52 99.48 0.65 -11.21 16 7 C -0.23 -13.40 10.47 84.03 0.88 -12.52 16 8 H 0.07 4.20 8.06 -2.91 -0.02 4.18 16 9 N -0.75 -36.96 5.40 -347.18 -1.87 -38.83 16 10 C 0.24 9.56 6.82 85.63 0.58 10.14 16 11 C -0.04 -1.57 6.61 41.60 0.28 -1.30 16 12 C -0.02 -0.42 11.50 83.49 0.96 0.54 16 13 N -0.28 -6.75 3.44 -347.75 -1.20 -7.94 16 14 C 0.12 1.59 6.44 86.38 0.56 2.14 16 15 C -0.08 -1.10 5.47 29.85 0.16 -0.94 16 16 C -0.09 -1.15 5.13 -19.87 -0.10 -1.25 16 17 C -0.13 -1.61 9.70 22.27 0.22 -1.40 16 18 C -0.13 -1.46 10.05 22.27 0.22 -1.24 16 19 C -0.13 -1.32 10.05 22.27 0.22 -1.09 16 20 C -0.13 -1.29 10.05 22.27 0.22 -1.06 16 21 C -0.12 -1.32 9.70 22.27 0.22 -1.10 16 22 N -0.11 -3.55 12.91 37.02 0.48 -3.07 16 23 N -0.30 -11.58 12.41 -48.60 -0.60 -12.18 16 24 H 0.26 15.93 8.31 -92.70 -0.77 15.15 16 25 H 0.36 17.67 5.52 -92.71 -0.51 17.16 16 26 H 0.07 2.43 8.14 -2.38 -0.02 2.41 16 27 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 28 H 0.23 3.70 8.06 -2.91 -0.02 3.68 16 29 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.14 1.03 8.07 -2.39 -0.02 1.01 16 31 H 0.08 1.11 8.09 -2.38 -0.02 1.09 16 32 H 0.08 1.29 8.06 -2.39 -0.02 1.27 16 33 H 0.13 1.47 8.06 -2.91 -0.02 1.45 16 34 H 0.14 1.08 8.06 -2.91 -0.02 1.05 16 35 H 0.14 0.86 8.06 -2.91 -0.02 0.84 16 36 H 0.14 0.86 8.06 -2.91 -0.02 0.84 16 37 H 0.14 1.05 8.06 -2.91 -0.02 1.03 16 Total: -1.00 -76.87 322.97 4.40 -72.47 By element: Atomic # 1 Polarization: 14.98 SS G_CDS: 0.50 Total: 15.48 kcal Atomic # 6 Polarization: -17.02 SS G_CDS: 4.89 Total: -12.14 kcal Atomic # 7 Polarization: -122.23 SS G_CDS: -2.89 Total: -125.12 kcal Atomic # 14 Polarization: 47.40 SS G_CDS: 1.90 Total: 49.30 kcal Total: -76.87 4.40 -72.47 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594649400.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 185.840 kcal (2) G-P(sol) polarization free energy of solvation -76.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.474 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds