Wall clock time and date at job start Mon Mar 30 2020 02:04:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86799 * 120.00267 * 2 1 4 4 H 1.48505 * 109.46703 * 269.99998 * 3 2 1 5 5 H 1.48497 * 109.47153 * 29.99437 * 3 2 1 6 6 H 1.48497 * 109.47261 * 150.00197 * 3 2 1 7 7 C 1.37881 * 119.99956 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99755 * 0.02562 * 7 2 1 9 9 C 1.50700 * 120.00174 * 179.97438 * 7 2 1 10 10 C 1.52997 * 109.47302 * 180.02562 * 9 7 2 11 11 N 1.46495 * 109.47125 * 180.02562 * 10 9 7 12 12 C 1.35313 * 125.86749 * 124.99924 * 11 10 9 13 13 C 1.35355 * 106.17637 * 179.97438 * 12 11 10 14 14 C 1.50694 * 126.75481 * 179.73261 * 13 12 11 15 15 H 1.08990 * 109.47690 * 245.00694 * 14 13 12 16 16 N 1.46905 * 109.47107 * 5.00983 * 14 13 12 17 17 C 1.50705 * 109.47243 * 125.00249 * 14 13 12 18 18 C 1.38230 * 120.00018 * 279.73298 * 17 14 13 19 19 C 1.38236 * 120.00342 * 179.78360 * 18 17 14 20 20 C 1.38241 * 119.99221 * 0.43884 * 19 18 17 21 21 C 1.38234 * 120.00344 * 359.81469 * 20 19 18 22 22 C 1.38234 * 119.99918 * 359.97438 * 21 20 19 23 23 N 1.33770 * 106.49598 * 0.02562 * 13 12 11 24 24 N 1.28636 * 108.88653 * 359.97438 * 23 13 12 25 25 H 0.96994 * 119.99435 * 0.02562 * 1 2 3 26 26 H 1.08997 * 109.46800 * 60.00329 * 9 7 2 27 27 H 1.09002 * 109.47044 * 300.00509 * 9 7 2 28 28 H 1.08998 * 109.47153 * 59.99666 * 10 9 7 29 29 H 1.09002 * 109.47158 * 300.00037 * 10 9 7 30 30 H 1.07998 * 126.91441 * 0.02562 * 12 11 10 31 31 H 1.00899 * 110.99379 * 296.04337 * 16 14 13 32 32 H 1.00895 * 111.00297 * 59.98969 * 16 14 13 33 33 H 1.08003 * 120.00172 * 359.97438 * 18 17 14 34 34 H 1.07993 * 120.00771 * 180.27470 * 19 18 17 35 35 H 1.08006 * 119.99707 * 179.83336 * 20 19 18 36 36 H 1.07996 * 120.00112 * 179.97438 * 21 20 19 37 37 H 1.08000 * 120.00322 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4002 5 1 1.4467 2.6527 0.6999 6 1 3.5468 1.4401 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5116 -1.1941 0.0000 10 6 4.0216 -2.6366 0.0001 11 7 5.4865 -2.6366 0.0001 12 6 6.2793 -3.2655 0.8984 13 6 7.5537 -3.0044 0.5245 14 6 8.8095 -3.4777 1.2100 15 1 9.3512 -2.6201 1.6087 16 7 8.4551 -4.3867 2.3083 17 6 9.6801 -4.2046 0.2176 18 6 9.4084 -5.5207 -0.1063 19 6 10.2042 -6.1862 -1.0199 20 6 11.2772 -5.5382 -1.6029 21 6 11.5521 -4.2237 -1.2750 22 6 10.7536 -3.5570 -0.3646 23 7 7.4792 -2.2382 -0.5695 24 7 6.2408 -2.0386 -0.8544 25 1 -0.4849 0.8400 -0.0004 26 1 3.8752 -0.6798 0.8895 27 1 3.8746 -0.6808 -0.8905 28 1 3.6578 -3.1507 -0.8896 29 1 3.6586 -3.1503 0.8903 30 1 5.9596 -3.8574 1.7433 31 1 7.9251 -3.9053 3.0192 32 1 7.9516 -5.1905 1.9642 33 1 8.5725 -6.0282 0.3521 34 1 9.9894 -7.2130 -1.2764 35 1 11.9007 -6.0589 -2.3147 36 1 12.3906 -3.7176 -1.7301 37 1 10.9680 -2.5299 -0.1088 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594649996.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:34 Heat of formation + Delta-G solvation = 117.133470 kcal Electronic energy + Delta-G solvation = -19736.136175 eV Core-core repulsion = 16708.231492 eV Total energy + Delta-G solvation = -3027.904683 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.133 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.02288 -39.42856 -36.10945 -34.93798 -32.86109 -31.06932 -30.74293 -30.30844 -30.07093 -26.09079 -25.37839 -22.62361 -22.39645 -21.97660 -20.89608 -19.99624 -17.61589 -17.32600 -16.36941 -16.23146 -15.80726 -15.23391 -14.97226 -14.71288 -14.45856 -14.23107 -13.72156 -13.41722 -13.16574 -12.92770 -12.73000 -12.34720 -11.97360 -11.67701 -11.37850 -11.22942 -11.06863 -10.73025 -10.69437 -10.35532 -10.04812 -9.59364 -9.52395 -9.25163 -9.04416 -8.93270 -8.74879 -8.72536 -6.26387 -4.29307 1.29988 1.38206 1.87780 2.70902 2.77365 3.21068 3.28562 3.32932 3.72943 4.26327 4.28193 4.50275 4.65108 4.80149 4.85581 4.94396 5.05300 5.06649 5.18003 5.18295 5.42864 5.46025 5.63172 5.64186 5.89991 5.94436 5.99088 6.06527 6.24645 6.38756 6.45780 6.54341 6.71863 6.80954 6.94375 6.96325 7.00415 7.13202 7.47438 8.21524 8.72280 8.80825 9.33459 10.85669 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.035614 B = 0.003549 C = 0.003484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.019491 B = 7886.650087 C = 8034.152713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.077 3.923 3 Si 0.879 3.121 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.267 1.267 7 C -0.533 4.533 8 H 0.077 0.923 9 C -0.019 4.019 10 C 0.120 3.880 11 N -0.269 5.269 12 C -0.059 4.059 13 C -0.065 4.065 14 C 0.222 3.778 15 H 0.104 0.896 16 N -0.830 5.830 17 C -0.058 4.058 18 C -0.103 4.103 19 C -0.123 4.123 20 C -0.125 4.125 21 C -0.120 4.120 22 C -0.100 4.100 23 N -0.270 5.270 24 N -0.075 5.075 25 H 0.267 0.733 26 H 0.023 0.977 27 H 0.032 0.968 28 H 0.097 0.903 29 H 0.100 0.900 30 H 0.180 0.820 31 H 0.348 0.652 32 H 0.343 0.657 33 H 0.116 0.884 34 H 0.119 0.881 35 H 0.118 0.882 36 H 0.120 0.880 37 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.294 -11.174 2.761 22.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.127 4.127 3 Si 0.706 3.294 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.191 1.191 7 C -0.571 4.571 8 H 0.095 0.905 9 C -0.058 4.058 10 C 0.001 3.999 11 N -0.062 5.062 12 C -0.212 4.212 13 C -0.206 4.206 14 C 0.108 3.892 15 H 0.121 0.879 16 N -0.360 5.360 17 C -0.059 4.059 18 C -0.122 4.122 19 C -0.141 4.141 20 C -0.143 4.143 21 C -0.138 4.138 22 C -0.118 4.118 23 N -0.135 5.135 24 N -0.054 5.054 25 H 0.077 0.923 26 H 0.042 0.958 27 H 0.051 0.949 28 H 0.115 0.885 29 H 0.118 0.882 30 H 0.197 0.803 31 H 0.161 0.839 32 H 0.157 0.843 33 H 0.134 0.866 34 H 0.137 0.863 35 H 0.136 0.864 36 H 0.138 0.862 37 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 19.884 -10.243 1.613 22.425 hybrid contribution -1.067 0.419 0.661 1.323 sum 18.817 -9.824 2.275 21.348 Atomic orbital electron populations 1.69880 1.06260 1.27424 1.49473 1.24916 0.94743 0.99206 0.93816 0.86781 0.80202 0.83384 0.79030 1.19789 1.21016 1.19136 1.20777 0.87947 0.95084 1.53281 0.90453 1.19859 0.98024 0.89570 0.98300 1.22545 0.69261 1.03603 1.04474 1.47928 1.10596 1.30568 1.17122 1.23172 0.90760 1.06528 1.00698 1.22844 0.95430 1.03987 0.98386 1.18448 0.88693 0.94085 0.87974 0.87862 1.59060 1.53258 1.10750 1.12934 1.19482 0.95337 0.94009 0.97055 1.20828 0.99442 0.94273 0.97623 1.21071 0.95789 0.99857 0.97383 1.21111 0.97856 0.95175 1.00132 1.21087 0.99784 0.94862 0.98101 1.20971 0.94497 0.99653 0.96707 1.75029 1.10184 1.15095 1.13214 1.78326 0.95864 1.16398 1.14860 0.92264 0.95846 0.94920 0.88526 0.88155 0.80267 0.83852 0.84346 0.86611 0.86336 0.86396 0.86153 0.85954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.29 13.96 55.43 0.77 -25.51 16 2 C 0.08 2.13 5.47 -17.82 -0.10 2.03 16 3 Si 0.88 21.30 27.47 -169.99 -4.67 16.63 16 4 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.27 -6.36 6.54 56.52 0.37 -5.99 16 7 C -0.53 -14.12 9.66 -34.44 -0.33 -14.45 16 8 H 0.08 2.14 7.99 -52.48 -0.42 1.72 16 9 C -0.02 -0.44 4.17 -27.88 -0.12 -0.55 16 10 C 0.12 2.13 6.39 -4.05 -0.03 2.11 16 11 N -0.27 -4.68 3.44 -61.27 -0.21 -4.89 16 12 C -0.06 -0.82 10.61 -17.05 -0.18 -1.00 16 13 C -0.06 -0.94 6.41 -82.78 -0.53 -1.47 16 14 C 0.22 2.54 3.53 -70.01 -0.25 2.29 16 15 H 0.10 1.16 8.00 -51.93 -0.42 0.75 16 16 N -0.83 -7.34 8.54 -6.65 -0.06 -7.40 16 17 C -0.06 -0.69 4.94 -104.62 -0.52 -1.21 16 18 C -0.10 -1.16 9.29 -39.58 -0.37 -1.53 16 19 C -0.12 -1.28 10.05 -39.58 -0.40 -1.68 16 20 C -0.12 -1.26 10.05 -39.58 -0.40 -1.65 16 21 C -0.12 -1.26 10.05 -39.58 -0.40 -1.66 16 22 C -0.10 -1.16 9.67 -39.58 -0.38 -1.54 16 23 N -0.27 -4.94 12.40 33.29 0.41 -4.53 16 24 N -0.07 -1.48 12.91 60.35 0.78 -0.70 16 25 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 26 H 0.02 0.54 7.20 -51.93 -0.37 0.17 16 27 H 0.03 0.78 7.55 -51.93 -0.39 0.38 16 28 H 0.10 1.67 8.14 -51.93 -0.42 1.24 16 29 H 0.10 1.53 8.07 -51.93 -0.42 1.11 16 30 H 0.18 1.74 7.77 -52.49 -0.41 1.33 16 31 H 0.35 2.59 8.75 -39.29 -0.34 2.25 16 32 H 0.34 2.70 7.15 -39.29 -0.28 2.42 16 33 H 0.12 1.13 6.65 -52.48 -0.35 0.78 16 34 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 35 H 0.12 0.92 8.06 -52.48 -0.42 0.49 16 36 H 0.12 1.00 8.06 -52.49 -0.42 0.57 16 37 H 0.12 1.29 8.04 -52.49 -0.42 0.86 16 LS Contribution 317.54 15.07 4.79 4.79 Total: -1.00 -31.91 317.54 -6.86 -38.77 By element: Atomic # 1 Polarization: 7.83 SS G_CDS: -4.68 Total: 3.15 kcal Atomic # 6 Polarization: -16.32 SS G_CDS: -3.99 Total: -20.31 kcal Atomic # 7 Polarization: -44.72 SS G_CDS: 1.70 Total: -43.02 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -4.67 Total: 16.63 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -31.91 -6.86 -38.77 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594649996.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.903 kcal (2) G-P(sol) polarization free energy of solvation -31.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.770 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds