Wall clock time and date at job start Mon Mar 30 2020 02:00:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35865 * 117.00155 * 2 1 4 4 C 1.38739 * 119.93080 * 0.02562 * 3 2 1 5 5 C 1.37851 * 120.18005 * 180.02562 * 4 3 2 6 6 C 1.39734 * 120.02836 * 359.97438 * 5 4 3 7 7 C 1.43195 * 120.07230 * 179.97438 * 6 5 4 8 8 N 6.70188 * 116.90815 * 359.96409 * 2 1 3 9 9 C 1.39736 * 119.85971 * 0.02562 * 6 5 4 10 10 C 1.38339 * 119.81989 * 359.97438 * 9 6 5 11 11 N 1.39987 * 120.00965 * 179.97438 * 10 9 6 12 12 C 1.46497 * 120.00539 * 354.94026 * 11 10 9 13 13 C 1.52997 * 109.47645 * 184.87905 * 12 11 10 14 14 C 1.50702 * 115.54857 * 279.18588 * 13 12 11 15 15 H 1.07995 * 120.00200 * 95.27837 * 14 13 12 16 16 C 1.37877 * 119.99497 * 275.27850 * 14 13 12 17 17 N 1.31511 * 120.00250 * 7.71248 * 16 14 13 18 18 Si 1.86799 * 119.99881 * 187.71712 * 16 14 13 19 19 H 1.48501 * 109.47233 * 359.97438 * 18 16 14 20 20 H 1.48497 * 109.47505 * 119.99728 * 18 16 14 21 21 H 1.48504 * 109.47178 * 240.00093 * 18 16 14 22 22 C 1.52998 * 117.50020 * 133.46935 * 13 12 11 23 23 C 1.52997 * 60.00248 * 252.51402 * 22 13 12 24 24 H 1.09001 * 109.46938 * 299.99901 * 1 2 3 25 25 H 1.08997 * 109.47211 * 59.99245 * 1 2 3 26 26 H 1.08991 * 109.47433 * 180.02562 * 1 2 3 27 27 H 1.08010 * 119.90881 * 0.02562 * 4 3 2 28 28 H 1.08004 * 119.99114 * 179.97438 * 5 4 3 29 29 H 1.07990 * 120.08946 * 179.72179 * 9 6 5 30 30 H 0.97004 * 119.99902 * 174.94908 * 11 10 9 31 31 H 1.09004 * 109.46684 * 304.88032 * 12 11 10 32 32 H 1.09002 * 109.47062 * 64.87525 * 12 11 10 33 33 H 0.97007 * 120.00323 * 185.00218 * 17 16 14 34 34 H 1.09000 * 117.50141 * 0.02562 * 22 13 12 35 35 H 1.08999 * 117.49279 * 145.02223 * 22 13 12 36 36 H 1.09006 * 117.49869 * 252.51417 * 23 22 13 37 37 H 1.08992 * 117.51758 * 107.47972 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2106 0.0000 4 6 1.2889 2.3732 0.0005 5 6 1.9094 3.6042 0.0000 6 6 3.3044 3.6840 -0.0005 7 6 3.9500 4.9622 -0.0016 8 7 4.4620 5.9763 -0.0037 9 6 4.0683 2.5139 -0.0011 10 6 3.4393 1.2818 -0.0005 11 7 4.2006 0.1070 -0.0016 12 6 5.6593 0.1795 -0.1152 13 6 6.2342 -1.2349 -0.2139 14 6 6.3846 -1.9681 1.0941 15 1 5.6096 -2.6422 1.4275 16 6 7.5118 -1.7781 1.8652 17 7 8.3827 -0.8484 1.5388 18 14 7.8018 -2.8414 3.3734 19 1 6.6822 -3.8056 3.5220 20 1 9.0780 -3.5843 3.2174 21 1 7.8752 -1.9792 4.5802 22 6 7.2835 -1.4971 -1.2961 23 6 5.8695 -2.0611 -1.4490 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 0.2104 2.3137 0.0014 28 1 1.3171 4.5073 0.0000 29 1 5.1466 2.5713 -0.0060 30 1 3.7622 -0.7551 0.0727 31 1 5.9265 0.7435 -1.0089 32 1 6.0680 0.6773 0.7642 33 1 9.2103 -0.7624 2.0376 34 1 7.5646 -0.6618 -1.9375 35 1 8.0831 -2.1999 -1.0619 36 1 5.7388 -3.1350 -1.3154 37 1 5.2198 -1.5971 -2.1909 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594700438.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:41 Heat of formation + Delta-G solvation = 42.908664 kcal Electronic energy + Delta-G solvation = -20056.236814 eV Core-core repulsion = 16992.820751 eV Total energy + Delta-G solvation = -3063.416063 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.17644 -37.81417 -37.13785 -35.97822 -34.24433 -32.00638 -30.41317 -29.41926 -27.33968 -25.99323 -25.00874 -23.15973 -21.62554 -21.11555 -19.33274 -18.57658 -17.91488 -16.71827 -15.93542 -15.70691 -15.11471 -14.68568 -14.47078 -14.20770 -13.96311 -13.73894 -13.65472 -13.42790 -12.98327 -12.66907 -12.35995 -12.13768 -11.95825 -11.72660 -11.53740 -11.10248 -10.98194 -10.91478 -10.86663 -10.53108 -10.28632 -9.78775 -9.62605 -8.83857 -8.50453 -8.42965 -8.27992 -6.77620 -6.12522 -4.18789 1.02246 1.64393 2.83973 3.16686 3.24397 3.30922 3.33937 3.36793 3.92469 4.09924 4.18617 4.35508 4.86521 5.01484 5.12845 5.17493 5.18236 5.30119 5.38311 5.45364 5.68777 5.89166 5.92456 6.06934 6.28737 6.30519 6.33985 6.50566 6.56075 6.63832 6.69027 6.79573 7.02504 7.32293 7.36481 7.45089 7.66161 7.79727 7.93267 8.31848 8.40015 8.83493 9.48489 10.96469 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.015446 B = 0.005308 C = 0.004661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1812.344659 B = 5274.119859 C = 6005.885412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.314 6.314 3 C 0.072 3.928 4 C -0.166 4.166 5 C -0.107 4.107 6 C -0.018 4.018 7 C 0.268 3.732 8 N -0.437 5.437 9 C -0.132 4.132 10 C 0.213 3.787 11 N -0.715 5.715 12 C 0.163 3.837 13 C 0.030 3.970 14 C -0.495 4.495 15 H 0.060 0.940 16 C 0.073 3.927 17 N -0.876 5.876 18 Si 0.887 3.113 19 H -0.272 1.272 20 H -0.283 1.283 21 H -0.284 1.284 22 C -0.150 4.150 23 C -0.207 4.207 24 H 0.053 0.947 25 H 0.053 0.947 26 H 0.097 0.903 27 H 0.132 0.868 28 H 0.125 0.875 29 H 0.139 0.861 30 H 0.407 0.593 31 H 0.034 0.966 32 H 0.069 0.931 33 H 0.261 0.739 34 H 0.065 0.935 35 H 0.082 0.918 36 H 0.078 0.922 37 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.370 2.861 -3.877 15.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.227 6.227 3 C 0.022 3.978 4 C -0.186 4.186 5 C -0.131 4.131 6 C -0.023 4.023 7 C -0.047 4.047 8 N -0.113 5.113 9 C -0.159 4.159 10 C 0.105 3.895 11 N -0.340 5.340 12 C 0.039 3.961 13 C 0.029 3.971 14 C -0.533 4.533 15 H 0.079 0.921 16 C -0.131 4.131 17 N -0.513 5.513 18 Si 0.715 3.285 19 H -0.197 1.197 20 H -0.209 1.209 21 H -0.210 1.210 22 C -0.189 4.189 23 C -0.244 4.244 24 H 0.072 0.928 25 H 0.071 0.929 26 H 0.115 0.885 27 H 0.149 0.851 28 H 0.143 0.857 29 H 0.157 0.843 30 H 0.243 0.757 31 H 0.053 0.947 32 H 0.087 0.913 33 H 0.071 0.929 34 H 0.083 0.917 35 H 0.101 0.899 36 H 0.096 0.904 37 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -13.095 4.339 -3.795 14.307 hybrid contribution -0.221 -1.133 0.862 1.441 sum -13.316 3.206 -2.933 14.007 Atomic orbital electron populations 1.22998 0.78672 1.03705 1.01043 1.86021 1.21020 1.26505 1.89121 1.18704 0.90480 0.84845 1.03766 1.20769 0.99551 0.91235 1.07045 1.20481 0.91895 0.97354 1.03323 1.15623 0.92369 0.85749 1.08525 1.25765 0.93044 0.92777 0.93079 1.81201 1.08483 1.11728 1.09890 1.20454 1.00185 0.88739 1.06520 1.17115 0.87077 0.88367 0.96949 1.44975 1.06569 1.04843 1.77661 1.21172 0.77183 0.98438 0.99285 1.18995 0.97775 0.90775 0.89550 1.20434 1.05007 1.25394 1.02447 0.92137 1.24951 0.96409 0.94470 0.97235 1.70012 1.09492 1.30539 1.41210 0.86617 0.78221 0.80614 0.83063 1.19701 1.20946 1.21031 1.22529 0.91671 1.01764 1.02892 1.22956 0.99242 0.99327 1.02896 0.92812 0.92857 0.88506 0.85063 0.85704 0.84348 0.75688 0.94739 0.91276 0.92943 0.91692 0.89923 0.90362 0.91487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 9.81 101.05 0.99 1.25 16 2 O -0.31 -4.12 9.73 -19.32 -0.19 -4.31 16 3 C 0.07 0.99 6.71 -38.92 -0.26 0.73 16 4 C -0.17 -1.86 9.01 -39.54 -0.36 -2.21 16 5 C -0.11 -1.23 9.74 -39.16 -0.38 -1.61 16 6 C -0.02 -0.25 5.74 -106.85 -0.61 -0.86 16 7 C 0.27 3.98 15.32 -22.47 -0.34 3.64 16 8 N -0.44 -7.27 18.54 41.84 0.78 -6.49 16 9 C -0.13 -2.03 9.00 -38.98 -0.35 -2.38 16 10 C 0.21 3.41 6.66 -83.62 -0.56 2.85 16 11 N -0.72 -12.91 5.68 -58.54 -0.33 -13.24 16 12 C 0.16 3.35 4.82 -4.04 -0.02 3.33 16 13 C 0.03 0.68 1.33 -155.66 -0.21 0.47 16 14 C -0.50 -12.63 8.82 -34.44 -0.30 -12.93 16 15 H 0.06 1.56 7.83 -52.49 -0.41 1.15 16 16 C 0.07 1.91 5.38 -17.82 -0.10 1.81 16 17 N -0.88 -23.73 12.99 55.43 0.72 -23.01 16 18 Si 0.89 20.42 29.55 -169.99 -5.02 15.39 16 19 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 20 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 21 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 22 C -0.15 -3.31 9.45 -26.73 -0.25 -3.56 16 23 C -0.21 -4.18 9.91 -26.73 -0.26 -4.44 16 24 H 0.05 0.39 7.65 -51.93 -0.40 -0.01 16 25 H 0.05 0.37 7.65 -51.93 -0.40 -0.03 16 26 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 27 H 0.13 1.08 6.27 -52.48 -0.33 0.75 16 28 H 0.12 1.14 8.06 -52.48 -0.42 0.71 16 29 H 0.14 2.22 6.75 -52.49 -0.35 1.87 16 30 H 0.41 7.46 7.84 -40.82 -0.32 7.14 16 31 H 0.03 0.68 7.70 -51.93 -0.40 0.28 16 32 H 0.07 1.60 7.97 -51.93 -0.41 1.19 16 33 H 0.26 6.81 8.32 -40.82 -0.34 6.47 16 34 H 0.06 1.34 8.08 -51.93 -0.42 0.93 16 35 H 0.08 1.95 8.14 -51.93 -0.42 1.52 16 36 H 0.08 1.57 8.14 -51.93 -0.42 1.15 16 37 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 LS Contribution 326.19 15.07 4.92 4.92 Total: -1.00 -27.78 326.19 -6.84 -34.62 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: -4.69 Total: 6.05 kcal Atomic # 6 Polarization: -10.91 SS G_CDS: -3.02 Total: -13.93 kcal Atomic # 7 Polarization: -43.91 SS G_CDS: 1.16 Total: -42.74 kcal Atomic # 8 Polarization: -4.12 SS G_CDS: -0.19 Total: -4.31 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.39 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -27.78 -6.84 -34.62 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594700438.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.526 kcal (2) G-P(sol) polarization free energy of solvation -27.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.617 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds