Wall clock time and date at job start Mon Mar 30 2020 02:00:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35865 * 117.00155 * 2 1 4 4 C 1.38739 * 119.93080 * 0.02562 * 3 2 1 5 5 C 1.37851 * 120.18005 * 180.02562 * 4 3 2 6 6 C 1.39734 * 120.02836 * 359.97438 * 5 4 3 7 7 C 1.43195 * 120.07230 * 179.97438 * 6 5 4 8 8 N 6.70188 * 116.90815 * 359.96409 * 2 1 3 9 9 C 1.39736 * 119.85971 * 0.02562 * 6 5 4 10 10 C 1.38339 * 119.81989 * 359.97438 * 9 6 5 11 11 N 1.39987 * 120.00965 * 179.97438 * 10 9 6 12 12 C 1.46497 * 120.00539 * 354.94026 * 11 10 9 13 13 C 1.52997 * 109.47645 * 184.87905 * 12 11 10 14 14 C 1.50702 * 115.54857 * 279.18588 * 13 12 11 15 15 H 1.07995 * 120.00200 * 95.27837 * 14 13 12 16 16 C 1.37877 * 119.99497 * 275.27850 * 14 13 12 17 17 N 1.31511 * 120.00250 * 7.71248 * 16 14 13 18 18 Si 1.86799 * 119.99881 * 187.71712 * 16 14 13 19 19 H 1.48501 * 109.47233 * 359.97438 * 18 16 14 20 20 H 1.48497 * 109.47505 * 119.99728 * 18 16 14 21 21 H 1.48504 * 109.47178 * 240.00093 * 18 16 14 22 22 C 1.52998 * 117.50020 * 133.46935 * 13 12 11 23 23 C 1.52997 * 60.00248 * 252.51402 * 22 13 12 24 24 H 1.09001 * 109.46938 * 299.99901 * 1 2 3 25 25 H 1.08997 * 109.47211 * 59.99245 * 1 2 3 26 26 H 1.08991 * 109.47433 * 180.02562 * 1 2 3 27 27 H 1.08010 * 119.90881 * 0.02562 * 4 3 2 28 28 H 1.08004 * 119.99114 * 179.97438 * 5 4 3 29 29 H 1.07990 * 120.08946 * 179.72179 * 9 6 5 30 30 H 0.97004 * 119.99902 * 174.94908 * 11 10 9 31 31 H 1.09004 * 109.46684 * 304.88032 * 12 11 10 32 32 H 1.09002 * 109.47062 * 64.87525 * 12 11 10 33 33 H 0.97007 * 120.00323 * 185.00218 * 17 16 14 34 34 H 1.09000 * 117.50141 * 0.02562 * 22 13 12 35 35 H 1.08999 * 117.49279 * 145.02223 * 22 13 12 36 36 H 1.09006 * 117.49869 * 252.51417 * 23 22 13 37 37 H 1.08992 * 117.51758 * 107.47972 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2106 0.0000 4 6 1.2889 2.3732 0.0005 5 6 1.9094 3.6042 0.0000 6 6 3.3044 3.6840 -0.0005 7 6 3.9500 4.9622 -0.0016 8 7 4.4620 5.9763 -0.0037 9 6 4.0683 2.5139 -0.0011 10 6 3.4393 1.2818 -0.0005 11 7 4.2006 0.1070 -0.0016 12 6 5.6593 0.1795 -0.1152 13 6 6.2342 -1.2349 -0.2139 14 6 6.3846 -1.9681 1.0941 15 1 5.6096 -2.6422 1.4275 16 6 7.5118 -1.7781 1.8652 17 7 8.3827 -0.8484 1.5388 18 14 7.8018 -2.8414 3.3734 19 1 6.6822 -3.8056 3.5220 20 1 9.0780 -3.5843 3.2174 21 1 7.8752 -1.9792 4.5802 22 6 7.2835 -1.4971 -1.2961 23 6 5.8695 -2.0611 -1.4490 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 0.2104 2.3137 0.0014 28 1 1.3171 4.5073 0.0000 29 1 5.1466 2.5713 -0.0060 30 1 3.7622 -0.7551 0.0727 31 1 5.9265 0.7435 -1.0089 32 1 6.0680 0.6773 0.7642 33 1 9.2103 -0.7624 2.0376 34 1 7.5646 -0.6618 -1.9375 35 1 8.0831 -2.1999 -1.0619 36 1 5.7388 -3.1350 -1.3154 37 1 5.2198 -1.5971 -2.1909 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594700438.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:41 Heat of formation + Delta-G solvation = 27.712513 kcal Electronic energy + Delta-G solvation = -20056.895769 eV Core-core repulsion = 16992.820751 eV Total energy + Delta-G solvation = -3064.075018 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.21850 -39.00401 -38.60136 -37.22419 -35.55824 -33.97064 -31.45431 -30.61887 -28.12874 -27.77343 -26.62235 -24.21463 -23.00716 -22.59731 -21.02137 -19.82256 -18.86823 -18.19016 -17.40418 -16.65580 -16.54670 -16.26987 -15.87168 -15.51703 -15.26295 -14.94854 -14.72665 -14.62140 -14.39244 -14.23434 -13.49692 -13.44909 -13.15950 -13.13240 -13.01205 -12.81709 -12.57510 -12.34194 -12.04901 -11.85470 -11.79527 -11.43673 -11.09457 -10.58450 -10.44832 -10.03971 -9.47991 -8.12180 -8.01277 -6.21778 -0.06858 0.60792 1.39917 1.44248 1.53231 1.65409 2.02092 2.40684 2.43600 2.66218 3.00077 3.02449 3.18746 3.57445 3.94557 4.15674 4.23791 4.35485 4.52229 4.58122 4.58359 4.60146 4.65163 4.81557 4.84191 4.89224 4.98297 5.00679 5.07350 5.27529 5.31552 5.46387 5.63529 5.66602 5.72428 5.79027 6.29979 6.39881 6.48972 6.67496 6.84171 7.08097 7.47198 8.96979 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.015446 B = 0.005308 C = 0.004661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1812.344659 B = 5274.119859 C = 6005.885412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.335 6.335 3 C 0.081 3.919 4 C -0.157 4.157 5 C -0.080 4.080 6 C -0.032 4.032 7 C 0.286 3.714 8 N -0.473 5.473 9 C -0.141 4.141 10 C 0.182 3.818 11 N -0.724 5.724 12 C 0.186 3.814 13 C 0.006 3.994 14 C -0.502 4.502 15 H 0.053 0.947 16 C 0.028 3.972 17 N -0.905 5.905 18 Si 0.943 3.057 19 H -0.267 1.267 20 H -0.282 1.282 21 H -0.287 1.287 22 C -0.159 4.159 23 C -0.177 4.177 24 H 0.069 0.931 25 H 0.073 0.927 26 H 0.110 0.890 27 H 0.172 0.828 28 H 0.159 0.841 29 H 0.118 0.882 30 H 0.404 0.596 31 H 0.037 0.963 32 H 0.031 0.969 33 H 0.259 0.741 34 H 0.074 0.926 35 H 0.061 0.939 36 H 0.080 0.920 37 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.513 2.935 -4.164 18.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.249 6.249 3 C 0.031 3.969 4 C -0.176 4.176 5 C -0.103 4.103 6 C -0.036 4.036 7 C -0.028 4.028 8 N -0.150 5.150 9 C -0.167 4.167 10 C 0.077 3.923 11 N -0.352 5.352 12 C 0.061 3.939 13 C 0.005 3.995 14 C -0.540 4.540 15 H 0.072 0.928 16 C -0.173 4.173 17 N -0.543 5.543 18 Si 0.769 3.231 19 H -0.191 1.191 20 H -0.208 1.208 21 H -0.213 1.213 22 C -0.197 4.197 23 C -0.214 4.214 24 H 0.088 0.912 25 H 0.091 0.909 26 H 0.129 0.871 27 H 0.190 0.810 28 H 0.177 0.823 29 H 0.136 0.864 30 H 0.240 0.760 31 H 0.055 0.945 32 H 0.049 0.951 33 H 0.068 0.932 34 H 0.093 0.907 35 H 0.079 0.921 36 H 0.098 0.902 37 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -16.284 4.429 -4.085 17.363 hybrid contribution 0.576 -1.153 0.937 1.593 sum -15.709 3.275 -3.148 16.352 Atomic orbital electron populations 1.23365 0.76061 1.05378 1.02712 1.86014 1.23742 1.26360 1.88791 1.18849 0.89722 0.86167 1.02152 1.21179 1.01357 0.89816 1.05277 1.20912 0.90794 0.98940 0.99630 1.15650 0.93415 0.84383 1.10163 1.25908 0.92265 0.92610 0.92003 1.81215 1.09350 1.12964 1.11429 1.20357 0.99543 0.89593 1.07227 1.17297 0.88297 0.87548 0.99175 1.44646 1.05206 1.05500 1.79864 1.20617 0.78974 0.96659 0.97614 1.19073 0.99090 0.92063 0.89261 1.20697 1.04616 1.25066 1.03616 0.92840 1.25593 0.96521 0.95541 0.99628 1.70114 1.09841 1.31850 1.42470 0.85743 0.78104 0.79173 0.80035 1.19110 1.20760 1.21315 1.22465 0.91961 1.01993 1.03316 1.22910 0.97823 0.99171 1.01515 0.91212 0.90894 0.87146 0.81030 0.82327 0.86378 0.76030 0.94497 0.95051 0.93201 0.90748 0.92078 0.90166 0.89280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.81 113.37 1.11 1.35 16 2 O -0.34 -7.97 9.73 -92.03 -0.90 -8.86 16 3 C 0.08 2.04 6.71 22.70 0.15 2.19 16 4 C -0.16 -2.82 9.01 22.30 0.20 -2.62 16 5 C -0.08 -1.52 9.74 22.54 0.22 -1.30 16 6 C -0.03 -0.82 5.74 -21.31 -0.12 -0.94 16 7 C 0.29 8.29 15.32 88.33 1.35 9.64 16 8 N -0.47 -15.60 18.54 19.00 0.35 -15.25 16 9 C -0.14 -4.36 9.00 22.66 0.20 -4.15 16 10 C 0.18 5.74 6.66 38.17 0.25 6.00 16 11 N -0.72 -26.51 5.68 -339.11 -1.93 -28.44 16 12 C 0.19 7.95 4.82 86.38 0.42 8.36 16 13 C 0.01 0.27 1.33 -52.93 -0.07 0.20 16 14 C -0.50 -26.12 8.82 25.60 0.23 -25.89 16 15 H 0.05 2.79 7.83 -2.91 -0.02 2.76 16 16 C 0.03 1.48 5.38 84.66 0.46 1.93 16 17 N -0.90 -50.56 12.99 21.45 0.28 -50.29 16 18 Si 0.94 42.61 29.55 68.60 2.03 44.63 16 19 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 20 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 21 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 22 C -0.16 -7.12 9.45 30.59 0.29 -6.83 16 23 C -0.18 -7.04 9.91 30.59 0.30 -6.74 16 24 H 0.07 0.68 7.65 -2.39 -0.02 0.67 16 25 H 0.07 0.66 7.65 -2.39 -0.02 0.64 16 26 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 27 H 0.17 1.74 6.27 -2.91 -0.02 1.72 16 28 H 0.16 2.02 8.06 -2.91 -0.02 2.00 16 29 H 0.12 4.06 6.75 -2.92 -0.02 4.04 16 30 H 0.40 14.90 7.84 -92.70 -0.73 14.17 16 31 H 0.04 1.51 7.70 -2.39 -0.02 1.50 16 32 H 0.03 1.55 7.97 -2.39 -0.02 1.53 16 33 H 0.26 13.93 8.32 -92.70 -0.77 13.16 16 34 H 0.07 3.12 8.08 -2.39 -0.02 3.11 16 35 H 0.06 2.96 8.14 -2.39 -0.02 2.94 16 36 H 0.08 3.15 8.14 -2.38 -0.02 3.13 16 37 H 0.09 3.15 8.14 -2.39 -0.02 3.13 16 Total: -1.00 -61.71 326.19 5.20 -56.51 By element: Atomic # 1 Polarization: 20.12 SS G_CDS: 0.37 Total: 20.48 kcal Atomic # 6 Polarization: -23.79 SS G_CDS: 4.99 Total: -18.80 kcal Atomic # 7 Polarization: -92.68 SS G_CDS: -1.29 Total: -93.97 kcal Atomic # 8 Polarization: -7.97 SS G_CDS: -0.90 Total: -8.86 kcal Atomic # 14 Polarization: 42.61 SS G_CDS: 2.03 Total: 44.63 kcal Total: -61.71 5.20 -56.51 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594700438.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.226 kcal (2) G-P(sol) polarization free energy of solvation -61.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.513 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds