Wall clock time and date at job start Mon Mar 30 2020 02:00:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42909 * 1 3 3 C 1.35980 * 116.99843 * 2 1 4 4 C 1.38718 * 119.98416 * 179.97438 * 3 2 1 5 5 C 1.38092 * 120.01997 * 179.97438 * 4 3 2 6 6 C 1.38857 * 119.97828 * 0.02562 * 5 4 3 7 7 N 1.40063 * 120.01251 * 179.97438 * 6 5 4 8 8 C 1.35495 * 120.00305 * 5.13681 * 7 6 5 9 9 N 7.10986 * 134.57474 * 357.82763 * 2 1 3 10 10 C 1.46497 * 119.99767 * 185.14114 * 7 6 5 11 11 C 1.53001 * 109.47623 * 89.96090 * 10 7 6 12 12 C 1.50694 * 115.54820 * 55.23489 * 11 10 7 13 13 H 1.08000 * 120.00507 * 264.85271 * 12 11 10 14 14 C 1.37883 * 119.99715 * 84.85605 * 12 11 10 15 15 N 1.31512 * 119.99791 * 181.85470 * 14 12 11 16 16 Si 1.86796 * 120.00064 * 1.85894 * 14 12 11 17 17 H 1.48504 * 109.47450 * 90.27626 * 16 14 12 18 18 H 1.48499 * 109.47084 * 210.27762 * 16 14 12 19 19 H 1.48504 * 109.47091 * 330.27779 * 16 14 12 20 20 C 1.53007 * 117.49501 * 269.57225 * 11 10 7 21 21 C 1.52996 * 117.49980 * 200.91301 * 11 10 7 22 22 C 1.38860 * 119.97087 * 0.24853 * 6 5 4 23 23 C 1.38087 * 119.97923 * 359.47372 * 22 6 5 24 24 H 1.09004 * 109.46847 * 300.00272 * 1 2 3 25 25 H 1.08994 * 109.46623 * 60.00314 * 1 2 3 26 26 H 1.08999 * 109.46765 * 180.02562 * 1 2 3 27 27 H 1.07999 * 119.98864 * 359.97438 * 4 3 2 28 28 H 1.07995 * 120.00738 * 179.97438 * 5 4 3 29 29 H 1.09006 * 109.46976 * 209.95561 * 10 7 6 30 30 H 1.09007 * 109.47289 * 329.95352 * 10 7 6 31 31 H 0.96999 * 119.99885 * 179.97438 * 15 14 12 32 32 H 1.09002 * 117.49904 * 359.97438 * 20 11 10 33 33 H 1.08997 * 117.49923 * 145.01954 * 20 11 10 34 34 H 1.09003 * 117.49946 * 214.97447 * 21 11 10 35 35 H 1.09005 * 117.50166 * 359.97040 * 21 11 10 36 36 H 1.08000 * 120.00716 * 179.72285 * 22 6 5 37 37 H 1.08004 * 119.99049 * 180.27680 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 3.4317 1.2839 0.0005 5 6 4.0593 2.5139 0.0000 6 6 3.3033 3.6786 -0.0005 7 7 3.9392 4.9266 -0.0005 8 6 5.2881 4.9997 -0.1051 9 7 6.4191 5.0610 -0.1920 10 6 3.1458 6.1529 0.1126 11 6 2.9833 6.5210 1.5887 12 6 4.2652 6.6643 2.3678 13 1 4.6470 5.8301 2.9377 14 6 4.9508 7.8605 2.3530 15 7 6.0884 7.9745 3.0031 16 14 4.2639 9.3191 1.4097 17 1 3.3924 10.1218 2.3051 18 1 5.3831 10.1639 0.9208 19 1 3.4700 8.8314 0.2533 20 6 1.7669 5.9586 2.3272 21 6 1.8222 7.4444 1.9629 22 6 1.9167 3.6055 0.0047 23 6 1.2905 2.3748 -0.0006 24 1 -0.3633 0.5139 0.8900 25 1 -0.3632 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 4.0195 0.3778 0.0014 28 1 5.1378 2.5699 0.0008 29 1 3.6534 6.9636 -0.4102 30 1 2.1636 5.9926 -0.3322 31 1 6.5709 8.8159 2.9924 32 1 1.0823 5.3268 1.7613 33 1 1.8938 5.6928 3.3766 34 1 1.9854 8.1554 2.7728 35 1 1.1743 7.7901 1.1573 36 1 1.3281 4.5111 0.0088 37 1 0.2120 2.3178 -0.0010 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596019873.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:44 Heat of formation + Delta-G solvation = 67.528043 kcal Electronic energy + Delta-G solvation = -20631.293526 eV Core-core repulsion = 17568.945039 eV Total energy + Delta-G solvation = -3062.348487 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.21489 -38.76697 -36.88472 -35.85528 -33.85889 -32.15254 -31.03535 -29.35062 -27.28510 -26.49969 -25.47709 -22.54619 -22.09083 -21.65537 -19.37810 -18.58957 -18.12897 -16.90595 -15.88516 -15.70300 -15.59306 -15.05821 -14.61831 -14.57491 -13.66015 -13.55719 -13.37603 -12.91299 -12.84212 -12.59268 -12.55227 -12.41666 -12.04048 -11.86603 -11.51932 -11.26021 -11.16646 -10.75814 -10.69442 -10.54313 -10.33151 -9.81290 -9.20833 -9.15003 -8.90043 -8.66254 -8.58045 -7.06461 -6.14911 -4.19062 1.43775 1.61967 2.82899 3.21617 3.30014 3.33323 3.36244 3.45899 3.72354 4.18677 4.34550 4.79217 4.82144 4.94091 5.00757 5.07575 5.12353 5.30880 5.35221 5.40263 5.51106 5.66818 5.73120 5.88702 5.95484 6.00002 6.06604 6.19231 6.33843 6.41476 6.44762 6.59650 6.68760 6.88575 6.95422 7.03465 7.37579 7.56823 7.67367 8.44468 8.76657 8.89409 9.46393 10.96831 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.025902 B = 0.005680 C = 0.005048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.720374 B = 4928.524844 C = 5545.541725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.322 6.322 3 C 0.077 3.923 4 C -0.106 4.106 5 C -0.136 4.136 6 C 0.181 3.819 7 N -0.484 5.484 8 C 0.434 3.566 9 N -0.435 5.435 10 C 0.151 3.849 11 C -0.022 4.022 12 C -0.486 4.486 13 H 0.075 0.925 14 C 0.081 3.919 15 N -0.888 5.888 16 Si 0.876 3.124 17 H -0.276 1.276 18 H -0.293 1.293 19 H -0.260 1.260 20 C -0.174 4.174 21 C -0.196 4.196 22 C -0.129 4.129 23 C -0.164 4.164 24 H 0.053 0.947 25 H 0.052 0.948 26 H 0.094 0.906 27 H 0.131 0.869 28 H 0.129 0.871 29 H 0.081 0.919 30 H 0.074 0.926 31 H 0.265 0.735 32 H 0.075 0.925 33 H 0.086 0.914 34 H 0.089 0.911 35 H 0.074 0.926 36 H 0.134 0.866 37 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.492 -10.497 -7.668 18.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.236 6.236 3 C 0.032 3.968 4 C -0.125 4.125 5 C -0.158 4.158 6 C 0.083 3.917 7 N -0.193 5.193 8 C 0.031 3.969 9 N -0.127 5.127 10 C 0.030 3.970 11 C -0.024 4.024 12 C -0.523 4.523 13 H 0.093 0.907 14 C -0.123 4.123 15 N -0.524 5.524 16 Si 0.704 3.296 17 H -0.202 1.202 18 H -0.220 1.220 19 H -0.184 1.184 20 C -0.211 4.211 21 C -0.234 4.234 22 C -0.151 4.151 23 C -0.184 4.184 24 H 0.072 0.928 25 H 0.071 0.929 26 H 0.113 0.887 27 H 0.149 0.851 28 H 0.147 0.853 29 H 0.099 0.901 30 H 0.092 0.908 31 H 0.075 0.925 32 H 0.094 0.906 33 H 0.105 0.895 34 H 0.108 0.892 35 H 0.092 0.908 36 H 0.152 0.848 37 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -11.583 -10.329 -7.746 17.345 hybrid contribution -1.030 1.226 -0.096 1.605 sum -12.613 -9.103 -7.842 17.420 Atomic orbital electron populations 1.22974 0.79025 1.03411 1.01188 1.86043 1.20812 1.27057 1.89720 1.18803 0.92143 0.84008 1.01865 1.20095 0.91258 0.97636 1.03556 1.20604 0.99865 0.90431 1.04939 1.17673 0.91691 0.83732 0.98567 1.41641 0.97716 1.05344 1.74592 1.23149 0.86002 0.96134 0.91644 1.81779 1.05727 1.05208 1.19944 1.21700 0.93698 0.83329 0.98300 1.19855 0.90932 0.99817 0.91846 1.20122 1.03688 0.99249 1.29226 0.90667 1.24982 0.94287 0.98444 0.94573 1.69884 1.14644 1.26172 1.41689 0.86933 0.78499 0.83069 0.81144 1.20232 1.22021 1.18443 1.22891 1.02076 0.94904 1.01234 1.22995 1.03625 0.93700 1.03113 1.20523 0.91867 0.98026 1.04671 1.20940 0.99627 0.91508 1.06297 0.92803 0.92939 0.88742 0.85149 0.85314 0.90083 0.90765 0.92482 0.90624 0.89544 0.89208 0.90786 0.84796 0.85349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 9.81 101.05 0.99 1.22 16 2 O -0.32 -3.89 10.50 -19.68 -0.21 -4.09 16 3 C 0.08 1.02 6.69 -39.23 -0.26 0.76 16 4 C -0.11 -1.47 9.98 -39.46 -0.39 -1.87 16 5 C -0.14 -2.14 9.30 -39.41 -0.37 -2.50 16 6 C 0.18 2.97 6.51 -83.64 -0.54 2.43 16 7 N -0.48 -9.12 2.60 -74.64 -0.19 -9.31 16 8 C 0.43 9.33 13.20 -102.20 -1.35 7.98 16 9 N -0.43 -10.06 18.54 41.27 0.76 -9.29 16 10 C 0.15 2.80 4.93 -4.04 -0.02 2.78 16 11 C -0.02 -0.47 1.08 -155.66 -0.17 -0.64 16 12 C -0.49 -12.88 8.31 -34.44 -0.29 -13.16 16 13 H 0.08 2.28 8.06 -52.49 -0.42 1.86 16 14 C 0.08 2.24 5.47 -17.82 -0.10 2.15 16 15 N -0.89 -26.84 13.96 55.43 0.77 -26.07 16 16 Si 0.88 20.81 24.96 -169.99 -4.24 16.57 16 17 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 18 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 19 H -0.26 -5.58 5.55 56.52 0.31 -5.27 16 20 C -0.17 -3.16 9.71 -26.69 -0.26 -3.42 16 21 C -0.20 -3.71 7.61 -26.69 -0.20 -3.92 16 22 C -0.13 -1.79 8.46 -39.41 -0.33 -2.12 16 23 C -0.16 -2.02 9.03 -39.46 -0.36 -2.37 16 24 H 0.05 0.39 7.66 -51.93 -0.40 -0.01 16 25 H 0.05 0.36 7.66 -51.93 -0.40 -0.04 16 26 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.13 1.58 8.06 -52.49 -0.42 1.15 16 28 H 0.13 2.09 7.02 -52.49 -0.37 1.72 16 29 H 0.08 1.58 6.29 -51.93 -0.33 1.25 16 30 H 0.07 1.10 5.98 -51.93 -0.31 0.79 16 31 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 32 H 0.08 1.15 6.07 -51.93 -0.32 0.83 16 33 H 0.09 1.67 8.14 -51.93 -0.42 1.25 16 34 H 0.09 1.84 7.29 -51.93 -0.38 1.46 16 35 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 36 H 0.13 1.69 4.65 -52.49 -0.24 1.44 16 37 H 0.13 1.22 6.29 -52.48 -0.33 0.89 16 LS Contribution 308.16 15.07 4.64 4.64 Total: -1.00 -31.08 308.16 -6.51 -37.59 By element: Atomic # 1 Polarization: 7.06 SS G_CDS: -4.41 Total: 2.66 kcal Atomic # 6 Polarization: -9.04 SS G_CDS: -3.65 Total: -12.69 kcal Atomic # 7 Polarization: -46.02 SS G_CDS: 1.34 Total: -44.67 kcal Atomic # 8 Polarization: -3.89 SS G_CDS: -0.21 Total: -4.09 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -4.24 Total: 16.57 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -31.08 -6.51 -37.59 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596019873.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.117 kcal (2) G-P(sol) polarization free energy of solvation -31.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.589 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds