Wall clock time and date at job start Mon Mar 30 2020 02:00:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42909 * 1 3 3 C 1.35980 * 116.99843 * 2 1 4 4 C 1.38718 * 119.98416 * 179.97438 * 3 2 1 5 5 C 1.38092 * 120.01997 * 179.97438 * 4 3 2 6 6 C 1.38857 * 119.97828 * 0.02562 * 5 4 3 7 7 N 1.40063 * 120.01251 * 179.97438 * 6 5 4 8 8 C 1.35495 * 120.00305 * 5.13681 * 7 6 5 9 9 N 7.10986 * 134.57474 * 357.82763 * 2 1 3 10 10 C 1.46497 * 119.99767 * 185.14114 * 7 6 5 11 11 C 1.53001 * 109.47623 * 89.96090 * 10 7 6 12 12 C 1.50694 * 115.54820 * 55.23489 * 11 10 7 13 13 H 1.08000 * 120.00507 * 264.85271 * 12 11 10 14 14 C 1.37883 * 119.99715 * 84.85605 * 12 11 10 15 15 N 1.31512 * 119.99791 * 181.85470 * 14 12 11 16 16 Si 1.86796 * 120.00064 * 1.85894 * 14 12 11 17 17 H 1.48504 * 109.47450 * 90.27626 * 16 14 12 18 18 H 1.48499 * 109.47084 * 210.27762 * 16 14 12 19 19 H 1.48504 * 109.47091 * 330.27779 * 16 14 12 20 20 C 1.53007 * 117.49501 * 269.57225 * 11 10 7 21 21 C 1.52996 * 117.49980 * 200.91301 * 11 10 7 22 22 C 1.38860 * 119.97087 * 0.24853 * 6 5 4 23 23 C 1.38087 * 119.97923 * 359.47372 * 22 6 5 24 24 H 1.09004 * 109.46847 * 300.00272 * 1 2 3 25 25 H 1.08994 * 109.46623 * 60.00314 * 1 2 3 26 26 H 1.08999 * 109.46765 * 180.02562 * 1 2 3 27 27 H 1.07999 * 119.98864 * 359.97438 * 4 3 2 28 28 H 1.07995 * 120.00738 * 179.97438 * 5 4 3 29 29 H 1.09006 * 109.46976 * 209.95561 * 10 7 6 30 30 H 1.09007 * 109.47289 * 329.95352 * 10 7 6 31 31 H 0.96999 * 119.99885 * 179.97438 * 15 14 12 32 32 H 1.09002 * 117.49904 * 359.97438 * 20 11 10 33 33 H 1.08997 * 117.49923 * 145.01954 * 20 11 10 34 34 H 1.09003 * 117.49946 * 214.97447 * 21 11 10 35 35 H 1.09005 * 117.50166 * 359.97040 * 21 11 10 36 36 H 1.08000 * 120.00716 * 179.72285 * 22 6 5 37 37 H 1.08004 * 119.99049 * 180.27680 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 3.4317 1.2839 0.0005 5 6 4.0593 2.5139 0.0000 6 6 3.3033 3.6786 -0.0005 7 7 3.9392 4.9266 -0.0005 8 6 5.2881 4.9997 -0.1051 9 7 6.4191 5.0610 -0.1920 10 6 3.1458 6.1529 0.1126 11 6 2.9833 6.5210 1.5887 12 6 4.2652 6.6643 2.3678 13 1 4.6470 5.8301 2.9377 14 6 4.9508 7.8605 2.3530 15 7 6.0884 7.9745 3.0031 16 14 4.2639 9.3191 1.4097 17 1 3.3924 10.1218 2.3051 18 1 5.3831 10.1639 0.9208 19 1 3.4700 8.8314 0.2533 20 6 1.7669 5.9586 2.3272 21 6 1.8222 7.4444 1.9629 22 6 1.9167 3.6055 0.0047 23 6 1.2905 2.3748 -0.0006 24 1 -0.3633 0.5139 0.8900 25 1 -0.3632 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 4.0195 0.3778 0.0014 28 1 5.1378 2.5699 0.0008 29 1 3.6534 6.9636 -0.4102 30 1 2.1636 5.9926 -0.3322 31 1 6.5709 8.8159 2.9924 32 1 1.0823 5.3268 1.7613 33 1 1.8938 5.6928 3.3766 34 1 1.9854 8.1554 2.7728 35 1 1.1743 7.7901 1.1573 36 1 1.3281 4.5111 0.0088 37 1 0.2120 2.3178 -0.0010 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596019873.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:43 Heat of formation + Delta-G solvation = 50.080948 kcal Electronic energy + Delta-G solvation = -20632.050089 eV Core-core repulsion = 17568.945039 eV Total energy + Delta-G solvation = -3063.105050 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.33089 -39.96308 -38.24600 -37.33172 -35.34027 -34.21794 -32.10300 -30.46005 -28.33896 -27.73687 -27.31851 -23.70344 -23.30145 -23.04441 -21.04092 -19.93329 -19.15546 -18.53107 -17.33718 -16.85511 -16.67771 -16.48206 -16.14215 -15.68496 -15.10245 -14.86674 -14.71056 -14.60624 -14.20253 -14.13561 -13.77758 -13.59686 -13.50305 -13.14386 -13.02016 -12.64821 -12.52616 -12.23205 -12.06007 -11.95908 -11.67057 -11.54165 -10.96817 -10.71043 -10.32447 -10.25978 -9.97076 -8.30144 -8.27361 -6.34589 0.37161 0.49924 1.33655 1.36325 1.40578 1.48407 1.81892 2.25916 2.36818 2.53652 2.90348 3.10551 3.29110 3.70129 3.94730 4.05301 4.15486 4.30119 4.31818 4.44851 4.48739 4.52676 4.56178 4.57225 4.73567 4.84965 4.94195 4.96579 5.02421 5.14677 5.17271 5.35132 5.40979 5.55637 5.58879 5.70350 5.72145 6.17830 6.33617 6.59997 6.74888 7.15491 7.34827 8.88951 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.025902 B = 0.005680 C = 0.005048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.720374 B = 4928.524844 C = 5545.541725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.337 6.337 3 C 0.084 3.916 4 C -0.117 4.117 5 C -0.152 4.152 6 C 0.149 3.851 7 N -0.484 5.484 8 C 0.440 3.560 9 N -0.485 5.485 10 C 0.153 3.847 11 C -0.057 4.057 12 C -0.471 4.471 13 H 0.013 0.987 14 C 0.016 3.984 15 N -0.953 5.953 16 Si 0.933 3.067 17 H -0.265 1.265 18 H -0.311 1.311 19 H -0.212 1.212 20 C -0.154 4.154 21 C -0.184 4.184 22 C -0.118 4.118 23 C -0.155 4.155 24 H 0.064 0.936 25 H 0.069 0.931 26 H 0.114 0.886 27 H 0.139 0.861 28 H 0.107 0.893 29 H 0.070 0.930 30 H 0.129 0.871 31 H 0.260 0.740 32 H 0.120 0.880 33 H 0.064 0.936 34 H 0.069 0.931 35 H 0.120 0.880 36 H 0.158 0.842 37 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.762 -10.929 -9.600 23.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.251 6.251 3 C 0.038 3.962 4 C -0.136 4.136 5 C -0.174 4.174 6 C 0.053 3.947 7 N -0.195 5.195 8 C 0.037 3.963 9 N -0.179 5.179 10 C 0.032 3.968 11 C -0.059 4.059 12 C -0.509 4.509 13 H 0.031 0.969 14 C -0.181 4.181 15 N -0.592 5.592 16 Si 0.757 3.243 17 H -0.190 1.190 18 H -0.239 1.239 19 H -0.135 1.135 20 C -0.191 4.191 21 C -0.221 4.221 22 C -0.139 4.139 23 C -0.174 4.174 24 H 0.083 0.917 25 H 0.087 0.913 26 H 0.132 0.868 27 H 0.157 0.843 28 H 0.126 0.874 29 H 0.089 0.911 30 H 0.147 0.853 31 H 0.069 0.931 32 H 0.138 0.862 33 H 0.083 0.917 34 H 0.087 0.913 35 H 0.138 0.862 36 H 0.176 0.824 37 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -16.934 -10.817 -9.688 22.307 hybrid contribution 0.517 1.079 0.602 1.339 sum -16.417 -9.738 -9.085 21.140 Atomic orbital electron populations 1.23341 0.76549 1.05382 1.02453 1.86047 1.23365 1.26427 1.89306 1.18936 0.91903 0.85129 1.00245 1.20206 0.92403 0.97202 1.03830 1.20568 0.99126 0.91552 1.06119 1.17964 0.92984 0.82578 1.01130 1.41883 0.96168 1.06686 1.74781 1.23531 0.87083 0.94867 0.90796 1.81741 1.07328 1.06735 1.22096 1.21767 0.95927 0.82977 0.96144 1.19779 0.89208 1.03738 0.93166 1.20236 1.05821 0.96759 1.28074 0.96913 1.25924 0.94398 1.01965 0.95843 1.70090 1.17204 1.26814 1.45133 0.86004 0.77963 0.78907 0.81435 1.18981 1.23924 1.13455 1.22930 1.00416 0.95477 1.00311 1.23078 1.01954 0.93544 1.03561 1.20779 0.90374 0.99600 1.03194 1.21319 1.01427 0.90236 1.04388 0.91708 0.91281 0.86753 0.84330 0.87448 0.91147 0.85347 0.93088 0.86216 0.91709 0.91255 0.86214 0.82421 0.81504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.81 113.37 1.11 1.30 16 2 O -0.34 -6.95 10.50 -93.32 -0.98 -7.93 16 3 C 0.08 1.95 6.69 22.50 0.15 2.10 16 4 C -0.12 -3.14 9.98 22.35 0.22 -2.92 16 5 C -0.15 -4.80 9.30 22.38 0.21 -4.59 16 6 C 0.15 4.63 6.51 38.12 0.25 4.88 16 7 N -0.48 -17.82 2.60 -390.06 -1.01 -18.83 16 8 C 0.44 19.64 13.20 184.39 2.43 22.07 16 9 N -0.49 -23.86 18.54 17.21 0.32 -23.54 16 10 C 0.15 5.13 4.93 86.38 0.43 5.55 16 11 C -0.06 -2.26 1.08 -52.93 -0.06 -2.31 16 12 C -0.47 -25.78 8.31 25.60 0.21 -25.57 16 13 H 0.01 0.82 8.06 -2.91 -0.02 0.80 16 14 C 0.02 0.90 5.47 84.66 0.46 1.36 16 15 N -0.95 -61.25 13.96 21.45 0.30 -60.95 16 16 Si 0.93 42.58 24.96 68.60 1.71 44.29 16 17 H -0.26 -11.49 7.11 99.48 0.71 -10.79 16 18 H -0.31 -15.05 7.11 99.48 0.71 -14.34 16 19 H -0.21 -8.01 5.55 99.48 0.55 -7.46 16 20 C -0.15 -5.00 9.71 30.62 0.30 -4.70 16 21 C -0.18 -6.08 7.61 30.62 0.23 -5.85 16 22 C -0.12 -2.72 8.46 22.38 0.19 -2.53 16 23 C -0.15 -3.01 9.03 22.35 0.20 -2.81 16 24 H 0.06 0.60 7.66 -2.39 -0.02 0.58 16 25 H 0.07 0.56 7.66 -2.39 -0.02 0.54 16 26 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 27 H 0.14 3.32 8.06 -2.91 -0.02 3.30 16 28 H 0.11 3.76 7.02 -2.91 -0.02 3.74 16 29 H 0.07 2.50 6.29 -2.38 -0.01 2.49 16 30 H 0.13 2.92 5.98 -2.38 -0.01 2.91 16 31 H 0.26 15.94 8.31 -92.71 -0.77 15.17 16 32 H 0.12 2.82 6.07 -2.39 -0.01 2.80 16 33 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 34 H 0.07 2.61 7.29 -2.39 -0.02 2.59 16 35 H 0.12 2.96 8.14 -2.38 -0.02 2.94 16 36 H 0.16 2.81 4.65 -2.91 -0.01 2.80 16 37 H 0.17 1.97 6.29 -2.91 -0.02 1.95 16 Total: -1.00 -75.40 308.16 7.62 -67.78 By element: Atomic # 1 Polarization: 12.26 SS G_CDS: 0.94 Total: 13.20 kcal Atomic # 6 Polarization: -20.35 SS G_CDS: 6.34 Total: -14.01 kcal Atomic # 7 Polarization: -102.93 SS G_CDS: -0.40 Total: -103.33 kcal Atomic # 8 Polarization: -6.95 SS G_CDS: -0.98 Total: -7.93 kcal Atomic # 14 Polarization: 42.58 SS G_CDS: 1.71 Total: 44.29 kcal Total: -75.40 7.62 -67.78 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596019873.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.862 kcal (2) G-P(sol) polarization free energy of solvation -75.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.781 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds