Wall clock time and date at job start Mon Mar 30 2020 02:02:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43207 * 179.97438 * 2 1 4 4 C 1.36488 * 126.56118 * 130.68990 * 3 2 1 5 5 C 1.50706 * 125.33306 * 0.05252 * 4 3 2 6 6 C 1.53003 * 117.49649 * 188.89263 * 5 4 3 7 7 C 1.53001 * 59.99977 * 252.51284 * 6 5 4 8 8 N 1.35654 * 109.33060 * 180.26578 * 4 3 2 9 9 H 0.97004 * 125.02900 * 179.76824 * 8 4 3 10 10 N 1.39902 * 109.93909 * 359.75552 * 8 4 3 11 11 H 0.97009 * 126.10645 * 180.02562 * 10 8 4 12 12 C 1.38222 * 107.78501 * 359.97438 * 10 8 4 13 13 N 1.30613 * 126.96961 * 179.97438 * 12 10 8 14 14 C 1.46501 * 119.99756 * 3.87139 * 13 12 10 15 15 C 1.53003 * 109.46814 * 114.98136 * 14 13 12 16 16 C 1.50703 * 115.55320 * 35.68095 * 15 14 13 17 17 H 1.08001 * 119.99784 * 264.69793 * 16 15 14 18 18 C 1.37880 * 119.99963 * 84.69742 * 16 15 14 19 19 N 1.31511 * 119.99938 * 351.03825 * 18 16 15 20 20 Si 1.86800 * 119.99887 * 171.03585 * 18 16 15 21 21 H 1.48505 * 109.46762 * 89.99971 * 20 18 16 22 22 H 1.48496 * 109.47138 * 209.99773 * 20 18 16 23 23 H 1.48494 * 109.47071 * 330.00200 * 20 18 16 24 24 C 1.53007 * 117.49749 * 249.97178 * 15 14 13 25 25 C 1.53003 * 117.49527 * 181.35200 * 15 14 13 26 26 H 1.08993 * 115.55002 * 334.60286 * 5 4 3 27 27 H 1.08998 * 117.49713 * 0.02562 * 6 5 4 28 28 H 1.09002 * 117.49367 * 145.02071 * 6 5 4 29 29 H 1.09002 * 117.49513 * 252.50835 * 7 6 5 30 30 H 1.08997 * 117.51785 * 107.48825 * 7 6 5 31 31 H 1.08993 * 109.47029 * 354.98363 * 14 13 12 32 32 H 1.08997 * 109.47147 * 234.97624 * 14 13 12 33 33 H 0.97003 * 120.00224 * 185.03443 * 19 18 16 34 34 H 1.08997 * 117.49857 * 359.97438 * 24 15 14 35 35 H 1.08996 * 117.49712 * 145.02759 * 24 15 14 36 36 H 1.09004 * 117.49437 * 214.98140 * 25 15 14 37 37 H 1.08999 * 117.49964 * 359.96927 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.3808 0.7158 -0.8313 5 6 2.9120 1.6503 -1.9167 6 6 3.9666 2.2010 -2.8787 7 6 3.3430 3.1153 -1.8222 8 7 4.6766 0.4499 -0.5305 9 1 5.4435 0.8339 -0.9836 10 7 4.7431 -0.4601 0.5301 11 1 5.5531 -0.8101 0.9331 12 6 3.4485 -0.7703 0.9021 13 7 3.0784 -1.5846 1.8539 14 6 4.0854 -2.2147 2.7114 15 6 3.9170 -1.7147 4.1476 16 6 2.4970 -1.4678 4.5877 17 1 2.0769 -0.4749 4.5240 18 6 1.7342 -2.5094 5.0717 19 7 2.1782 -3.7444 4.9867 20 14 0.0702 -2.1664 5.8481 21 1 -0.9826 -2.2092 4.8015 22 1 -0.2159 -3.1949 6.8803 23 1 0.0861 -0.8224 6.4794 24 6 5.0009 -0.7899 4.7053 25 6 4.9014 -2.2354 5.1968 26 1 1.9214 1.4422 -2.3207 27 1 4.9993 1.8871 -2.7269 28 1 3.6697 2.3552 -3.9162 29 1 2.6360 3.8710 -2.1647 30 1 3.9652 3.4033 -0.9749 31 1 5.0815 -1.9573 2.3516 32 1 3.9582 -3.2969 2.6863 33 1 1.6120 -4.4832 5.2598 34 1 5.8341 -0.5381 4.0493 35 1 4.6870 -0.0026 5.3907 36 1 4.5219 -2.3991 6.2055 37 1 5.6685 -2.9346 4.8640 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596271870.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:26 Heat of formation + Delta-G solvation = 182.691481 kcal Electronic energy + Delta-G solvation = -20143.786838 eV Core-core repulsion = 17118.724963 eV Total energy + Delta-G solvation = -3025.061874 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.133 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.83781 -37.54909 -36.61867 -35.77975 -33.79850 -31.68635 -31.24580 -29.36697 -25.88037 -25.03657 -23.93624 -22.83684 -22.22009 -21.06631 -19.60387 -18.87566 -18.55663 -16.50152 -16.04952 -15.88410 -15.42525 -14.87969 -14.56513 -14.31328 -13.78680 -13.54937 -12.74260 -12.66435 -12.60684 -12.42480 -12.32474 -12.03083 -11.74448 -11.37005 -11.35685 -10.86573 -10.76916 -10.76258 -10.39958 -10.22327 -10.02919 -9.48731 -8.93804 -8.88581 -8.28644 -8.21979 -7.94737 -6.68294 -5.79181 -3.78360 1.37312 1.99679 3.26815 3.31106 3.38514 3.48250 3.54511 3.57701 3.85696 4.04140 4.20026 4.31041 4.51125 4.63613 4.74585 5.04318 5.14730 5.31988 5.39108 5.45759 5.51495 5.58249 5.65078 5.76501 6.05738 6.25128 6.31530 6.49112 6.67258 6.73634 6.85093 7.10989 7.13946 7.32260 7.52149 7.62340 7.94117 8.14330 8.25350 8.61946 9.11277 9.20670 9.83330 11.30921 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.020550 B = 0.005372 C = 0.004596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1362.175463 B = 5210.804748 C = 6090.703847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.448 5.448 2 C 0.311 3.689 3 C -0.163 4.163 4 C 0.256 3.744 5 C -0.110 4.110 6 C -0.170 4.170 7 C -0.158 4.158 8 N -0.492 5.492 9 H 0.433 0.567 10 N -0.560 5.560 11 H 0.437 0.563 12 C 0.403 3.597 13 N -0.501 5.501 14 C 0.106 3.894 15 C 0.054 3.946 16 C -0.463 4.463 17 H 0.055 0.945 18 C 0.075 3.925 19 N -0.884 5.884 20 Si 0.883 3.117 21 H -0.280 1.280 22 H -0.289 1.289 23 H -0.276 1.276 24 C -0.217 4.217 25 C -0.160 4.160 26 H 0.139 0.861 27 H 0.095 0.905 28 H 0.108 0.892 29 H 0.109 0.891 30 H 0.102 0.898 31 H -0.005 1.005 32 H 0.079 0.921 33 H 0.256 0.744 34 H 0.057 0.943 35 H 0.075 0.925 36 H 0.081 0.919 37 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.939 11.464 -16.406 22.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.126 5.126 2 C -0.003 4.003 3 C -0.182 4.182 4 C 0.133 3.867 5 C -0.130 4.130 6 C -0.208 4.208 7 C -0.195 4.195 8 N -0.207 5.207 9 H 0.277 0.723 10 N -0.306 5.306 11 H 0.284 0.716 12 C 0.129 3.871 13 N -0.226 5.226 14 C -0.023 4.023 15 C 0.053 3.947 16 C -0.501 4.501 17 H 0.073 0.927 18 C -0.126 4.126 19 N -0.522 5.522 20 Si 0.711 3.289 21 H -0.206 1.206 22 H -0.215 1.215 23 H -0.201 1.201 24 C -0.254 4.254 25 C -0.198 4.198 26 H 0.156 0.844 27 H 0.113 0.887 28 H 0.127 0.873 29 H 0.127 0.873 30 H 0.121 0.879 31 H 0.014 0.986 32 H 0.097 0.903 33 H 0.066 0.934 34 H 0.075 0.925 35 H 0.094 0.906 36 H 0.099 0.901 37 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 7.684 10.785 -15.785 20.604 hybrid contribution 1.272 0.093 0.466 1.358 sum 8.956 10.877 -15.319 20.813 Atomic orbital electron populations 1.81173 1.11625 1.10285 1.09510 1.24043 0.90834 0.92628 0.92776 1.14982 0.85141 1.11796 1.06288 1.19350 0.82726 0.92239 0.92412 1.20891 1.01042 0.94006 0.97072 1.23045 0.97541 1.03386 0.96801 1.23129 1.03514 0.91580 1.01307 1.42957 1.05920 1.41973 1.29837 0.72293 1.45486 1.09295 1.44995 1.30801 0.71599 1.21053 0.79024 0.93706 0.93315 1.73052 1.30730 1.13197 1.05617 1.21456 0.88216 0.99174 0.93446 1.18905 0.91403 0.95646 0.88739 1.20097 0.95059 0.94755 1.40165 0.92682 1.24826 0.97223 0.95096 0.95500 1.69960 1.36190 0.97984 1.48100 0.86727 0.85224 0.77723 0.79204 1.20598 1.21493 1.20093 1.23064 1.02638 0.94195 1.05481 1.22537 1.02733 0.93451 1.01058 0.84354 0.88663 0.87313 0.87291 0.87919 0.98645 0.90333 0.93428 0.92461 0.90608 0.90064 0.92107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -9.23 18.54 41.84 0.78 -8.45 16 2 C 0.31 5.84 15.45 -22.47 -0.35 5.50 16 3 C -0.16 -2.65 6.13 -104.71 -0.64 -3.29 16 4 C 0.26 2.81 6.72 -81.53 -0.55 2.26 16 5 C -0.11 -0.82 5.93 -91.77 -0.54 -1.37 16 6 C -0.17 -0.74 10.12 -26.73 -0.27 -1.01 16 7 C -0.16 -0.87 10.23 -26.73 -0.27 -1.15 16 8 N -0.49 -4.55 7.14 33.81 0.24 -4.31 16 9 H 0.43 2.19 7.81 -182.74 -1.43 0.76 16 10 N -0.56 -7.41 7.24 32.55 0.24 -7.17 16 11 H 0.44 5.11 7.44 -182.74 -1.36 3.75 16 12 C 0.40 7.46 8.03 -153.72 -1.23 6.22 16 13 N -0.50 -11.71 9.86 -58.38 -0.58 -12.29 16 14 C 0.11 2.47 6.51 -4.04 -0.03 2.45 16 15 C 0.05 1.37 1.77 -155.65 -0.28 1.10 16 16 C -0.46 -13.43 8.05 -34.44 -0.28 -13.71 16 17 H 0.06 1.66 7.83 -52.49 -0.41 1.25 16 18 C 0.08 2.22 5.38 -17.82 -0.10 2.12 16 19 N -0.88 -26.49 13.02 55.43 0.72 -25.77 16 20 Si 0.88 23.15 29.55 -169.99 -5.02 18.13 16 21 H -0.28 -7.51 7.11 56.52 0.40 -7.10 16 22 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 23 H -0.28 -7.12 7.11 56.52 0.40 -6.72 16 24 C -0.22 -4.80 9.88 -26.73 -0.26 -5.06 16 25 C -0.16 -3.81 9.56 -26.73 -0.26 -4.06 16 26 H 0.14 1.05 8.05 -51.93 -0.42 0.64 16 27 H 0.09 0.28 7.05 -51.93 -0.37 -0.08 16 28 H 0.11 0.36 8.14 -51.93 -0.42 -0.07 16 29 H 0.11 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.00 -0.09 5.99 -51.93 -0.31 -0.40 16 32 H 0.08 2.01 8.14 -51.93 -0.42 1.59 16 33 H 0.26 7.41 8.32 -40.82 -0.34 7.07 16 34 H 0.06 1.10 8.06 -51.93 -0.42 0.68 16 35 H 0.08 1.70 8.14 -51.93 -0.42 1.28 16 36 H 0.08 2.07 8.14 -51.93 -0.42 1.65 16 37 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 LS Contribution 327.98 15.07 4.94 4.94 Total: -1.00 -35.95 327.98 -10.54 -46.50 By element: Atomic # 1 Polarization: 5.23 SS G_CDS: -6.81 Total: -1.57 kcal Atomic # 6 Polarization: -4.95 SS G_CDS: -5.05 Total: -10.00 kcal Atomic # 7 Polarization: -59.39 SS G_CDS: 1.40 Total: -57.99 kcal Atomic # 14 Polarization: 23.15 SS G_CDS: -5.02 Total: 18.13 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -35.95 -10.54 -46.50 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596271870.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 229.188 kcal (2) G-P(sol) polarization free energy of solvation -35.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 193.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.496 kcal (6) G-S(sol) free energy of system = (1) + (5) 182.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds