Wall clock time and date at job start Mon Mar 30 2020 02:02:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43207 * 179.97438 * 2 1 4 4 C 1.36488 * 126.56118 * 130.68990 * 3 2 1 5 5 C 1.50706 * 125.33306 * 0.05252 * 4 3 2 6 6 C 1.53003 * 117.49649 * 188.89263 * 5 4 3 7 7 C 1.53001 * 59.99977 * 252.51284 * 6 5 4 8 8 N 1.35654 * 109.33060 * 180.26578 * 4 3 2 9 9 H 0.97004 * 125.02900 * 179.76824 * 8 4 3 10 10 N 1.39902 * 109.93909 * 359.75552 * 8 4 3 11 11 H 0.97009 * 126.10645 * 180.02562 * 10 8 4 12 12 C 1.38222 * 107.78501 * 359.97438 * 10 8 4 13 13 N 1.30613 * 126.96961 * 179.97438 * 12 10 8 14 14 C 1.46501 * 119.99756 * 3.87139 * 13 12 10 15 15 C 1.53003 * 109.46814 * 114.98136 * 14 13 12 16 16 C 1.50703 * 115.55320 * 35.68095 * 15 14 13 17 17 H 1.08001 * 119.99784 * 264.69793 * 16 15 14 18 18 C 1.37880 * 119.99963 * 84.69742 * 16 15 14 19 19 N 1.31511 * 119.99938 * 351.03825 * 18 16 15 20 20 Si 1.86800 * 119.99887 * 171.03585 * 18 16 15 21 21 H 1.48505 * 109.46762 * 89.99971 * 20 18 16 22 22 H 1.48496 * 109.47138 * 209.99773 * 20 18 16 23 23 H 1.48494 * 109.47071 * 330.00200 * 20 18 16 24 24 C 1.53007 * 117.49749 * 249.97178 * 15 14 13 25 25 C 1.53003 * 117.49527 * 181.35200 * 15 14 13 26 26 H 1.08993 * 115.55002 * 334.60286 * 5 4 3 27 27 H 1.08998 * 117.49713 * 0.02562 * 6 5 4 28 28 H 1.09002 * 117.49367 * 145.02071 * 6 5 4 29 29 H 1.09002 * 117.49513 * 252.50835 * 7 6 5 30 30 H 1.08997 * 117.51785 * 107.48825 * 7 6 5 31 31 H 1.08993 * 109.47029 * 354.98363 * 14 13 12 32 32 H 1.08997 * 109.47147 * 234.97624 * 14 13 12 33 33 H 0.97003 * 120.00224 * 185.03443 * 19 18 16 34 34 H 1.08997 * 117.49857 * 359.97438 * 24 15 14 35 35 H 1.08996 * 117.49712 * 145.02759 * 24 15 14 36 36 H 1.09004 * 117.49437 * 214.98140 * 25 15 14 37 37 H 1.08999 * 117.49964 * 359.96927 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.3808 0.7158 -0.8313 5 6 2.9120 1.6503 -1.9167 6 6 3.9666 2.2010 -2.8787 7 6 3.3430 3.1153 -1.8222 8 7 4.6766 0.4499 -0.5305 9 1 5.4435 0.8339 -0.9836 10 7 4.7431 -0.4601 0.5301 11 1 5.5531 -0.8101 0.9331 12 6 3.4485 -0.7703 0.9021 13 7 3.0784 -1.5846 1.8539 14 6 4.0854 -2.2147 2.7114 15 6 3.9170 -1.7147 4.1476 16 6 2.4970 -1.4678 4.5877 17 1 2.0769 -0.4749 4.5240 18 6 1.7342 -2.5094 5.0717 19 7 2.1782 -3.7444 4.9867 20 14 0.0702 -2.1664 5.8481 21 1 -0.9826 -2.2092 4.8015 22 1 -0.2159 -3.1949 6.8803 23 1 0.0861 -0.8224 6.4794 24 6 5.0009 -0.7899 4.7053 25 6 4.9014 -2.2354 5.1968 26 1 1.9214 1.4422 -2.3207 27 1 4.9993 1.8871 -2.7269 28 1 3.6697 2.3552 -3.9162 29 1 2.6360 3.8710 -2.1647 30 1 3.9652 3.4033 -0.9749 31 1 5.0815 -1.9573 2.3516 32 1 3.9582 -3.2969 2.6863 33 1 1.6120 -4.4832 5.2598 34 1 5.8341 -0.5381 4.0493 35 1 4.6870 -0.0026 5.3907 36 1 4.5219 -2.3991 6.2055 37 1 5.6685 -2.9346 4.8640 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596271870.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:25 Heat of formation + Delta-G solvation = 158.065729 kcal Electronic energy + Delta-G solvation = -20144.854691 eV Core-core repulsion = 17118.724963 eV Total energy + Delta-G solvation = -3026.129727 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.133 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.96111 -38.70993 -37.93977 -37.20670 -35.23128 -33.87596 -32.37499 -30.68303 -27.69151 -26.84805 -24.92413 -23.43152 -23.19313 -22.90021 -21.13635 -20.12390 -19.90756 -17.96001 -17.57846 -16.71753 -16.62993 -16.52645 -16.02904 -15.83126 -15.23518 -14.99884 -14.44800 -14.19584 -14.03232 -13.76486 -13.59317 -13.37683 -12.93367 -12.90121 -12.72907 -12.38754 -12.35870 -12.19851 -11.96756 -11.67062 -11.36739 -11.09819 -10.84762 -10.38329 -10.04614 -9.88548 -9.80178 -8.03521 -8.01419 -6.03416 0.34414 0.96817 1.34121 1.38937 1.44867 1.81576 1.92112 2.46738 2.70917 2.77116 2.98579 3.22484 3.28516 3.50055 3.71257 3.87415 4.04541 4.10350 4.31920 4.39837 4.49422 4.61385 4.68787 4.76158 4.86566 4.96494 5.01229 5.11003 5.18231 5.23104 5.30066 5.37975 5.55547 5.65309 5.81504 5.87279 6.15393 6.49655 6.86743 6.91755 6.96417 7.58387 7.76246 9.07557 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.020550 B = 0.005372 C = 0.004596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1362.175463 B = 5210.804748 C = 6090.703847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C 0.326 3.674 3 C -0.237 4.237 4 C 0.317 3.683 5 C -0.143 4.143 6 C -0.140 4.140 7 C -0.151 4.151 8 N -0.452 5.452 9 H 0.461 0.539 10 N -0.550 5.550 11 H 0.448 0.552 12 C 0.417 3.583 13 N -0.585 5.585 14 C 0.125 3.875 15 C 0.017 3.983 16 C -0.465 4.465 17 H 0.031 0.969 18 C 0.030 3.970 19 N -0.908 5.908 20 Si 0.929 3.071 21 H -0.292 1.292 22 H -0.278 1.278 23 H -0.270 1.270 24 C -0.186 4.186 25 C -0.163 4.163 26 H 0.135 0.865 27 H 0.118 0.882 28 H 0.126 0.874 29 H 0.119 0.881 30 H 0.106 0.894 31 H 0.031 0.969 32 H 0.037 0.963 33 H 0.254 0.746 34 H 0.097 0.903 35 H 0.069 0.931 36 H 0.054 0.946 37 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.964 14.038 -18.904 26.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.185 5.185 2 C 0.014 3.986 3 C -0.256 4.256 4 C 0.188 3.812 5 C -0.163 4.163 6 C -0.177 4.177 7 C -0.189 4.189 8 N -0.167 5.167 9 H 0.311 0.689 10 N -0.294 5.294 11 H 0.298 0.702 12 C 0.144 3.856 13 N -0.314 5.314 14 C -0.004 4.004 15 C 0.016 3.984 16 C -0.504 4.504 17 H 0.050 0.950 18 C -0.169 4.169 19 N -0.548 5.548 20 Si 0.757 3.243 21 H -0.219 1.219 22 H -0.203 1.203 23 H -0.195 1.195 24 C -0.223 4.223 25 C -0.201 4.201 26 H 0.152 0.848 27 H 0.136 0.864 28 H 0.145 0.855 29 H 0.137 0.863 30 H 0.125 0.875 31 H 0.049 0.951 32 H 0.055 0.945 33 H 0.063 0.937 34 H 0.115 0.885 35 H 0.088 0.912 36 H 0.073 0.927 37 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 10.815 13.388 -18.296 25.119 hybrid contribution 0.510 -0.487 0.999 1.223 sum 11.324 12.901 -17.297 24.369 Atomic orbital electron populations 1.81146 1.13060 1.12647 1.11664 1.24507 0.91505 0.91198 0.91361 1.15029 0.84353 1.16331 1.09920 1.19751 0.82082 0.89137 0.90246 1.21017 1.02462 0.94930 0.97876 1.23283 0.97359 1.00033 0.97022 1.23283 1.03580 0.89961 1.02076 1.43103 1.06663 1.39363 1.27622 0.68883 1.45295 1.08272 1.44771 1.31063 0.70212 1.21158 0.81089 0.91661 0.91705 1.73007 1.31746 1.17569 1.09070 1.21010 0.90229 0.96753 0.92456 1.19071 0.90321 0.98469 0.90570 1.20256 0.97247 0.93475 1.39383 0.95046 1.25394 0.99902 0.95204 0.96423 1.70047 1.37008 0.98297 1.49428 0.86004 0.81919 0.78040 0.78363 1.21899 1.20319 1.19472 1.23044 1.01965 0.92730 1.04543 1.22442 1.02844 0.95453 0.99338 0.84768 0.86379 0.85546 0.86294 0.87520 0.95098 0.94506 0.93723 0.88507 0.91238 0.92716 0.90274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -21.96 18.54 19.01 0.35 -21.61 16 2 C 0.33 12.73 15.45 88.33 1.37 14.09 16 3 C -0.24 -7.58 6.13 -19.92 -0.12 -7.70 16 4 C 0.32 5.94 6.72 41.56 0.28 6.22 16 5 C -0.14 -1.61 5.93 -11.54 -0.07 -1.68 16 6 C -0.14 -0.40 10.12 30.60 0.31 -0.09 16 7 C -0.15 -0.96 10.23 30.59 0.31 -0.65 16 8 N -0.45 -6.20 7.14 -46.96 -0.34 -6.54 16 9 H 0.46 1.61 7.81 -213.44 -1.67 -0.06 16 10 N -0.55 -12.75 7.24 -50.94 -0.37 -13.12 16 11 H 0.45 8.69 7.44 -213.44 -1.59 7.10 16 12 C 0.42 15.18 8.03 136.16 1.09 16.28 16 13 N -0.58 -28.10 9.86 -338.61 -3.34 -31.44 16 14 C 0.13 5.90 6.51 86.38 0.56 6.46 16 15 C 0.02 0.85 1.77 -52.92 -0.09 0.76 16 16 C -0.47 -27.96 8.05 25.60 0.21 -27.75 16 17 H 0.03 1.97 7.83 -2.91 -0.02 1.95 16 18 C 0.03 1.80 5.38 84.66 0.46 2.26 16 19 N -0.91 -56.54 13.02 21.45 0.28 -56.26 16 20 Si 0.93 49.29 29.55 68.60 2.03 51.31 16 21 H -0.29 -15.96 7.11 99.48 0.71 -15.25 16 22 H -0.28 -14.09 7.11 99.48 0.71 -13.39 16 23 H -0.27 -13.88 7.11 99.48 0.71 -13.17 16 24 C -0.19 -7.93 9.88 30.60 0.30 -7.63 16 25 C -0.16 -7.76 9.56 30.60 0.29 -7.47 16 26 H 0.13 1.76 8.05 -2.39 -0.02 1.74 16 27 H 0.12 -0.17 7.05 -2.39 -0.02 -0.19 16 28 H 0.13 0.06 8.14 -2.39 -0.02 0.04 16 29 H 0.12 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.11 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.03 1.15 5.99 -2.39 -0.01 1.14 16 32 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 33 H 0.25 15.25 8.32 -92.71 -0.77 14.48 16 34 H 0.10 3.34 8.06 -2.39 -0.02 3.32 16 35 H 0.07 3.03 8.14 -2.39 -0.02 3.01 16 36 H 0.05 2.85 8.14 -2.38 -0.02 2.84 16 37 H 0.08 3.42 8.14 -2.39 -0.02 3.40 16 Total: -1.00 -85.80 327.98 1.37 -84.43 By element: Atomic # 1 Polarization: 2.27 SS G_CDS: -2.13 Total: 0.13 kcal Atomic # 6 Polarization: -11.80 SS G_CDS: 4.89 Total: -6.90 kcal Atomic # 7 Polarization: -125.56 SS G_CDS: -3.41 Total: -128.97 kcal Atomic # 14 Polarization: 49.29 SS G_CDS: 2.03 Total: 51.31 kcal Total: -85.80 1.37 -84.43 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596271870.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 242.493 kcal (2) G-P(sol) polarization free energy of solvation -85.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 156.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.428 kcal (6) G-S(sol) free energy of system = (1) + (5) 158.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds