Wall clock time and date at job start Mon Mar 30 2020 01:59:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35713 * 116.99554 * 2 1 4 4 C 1.38638 * 120.14938 * 0.24719 * 3 2 1 5 5 C 1.38108 * 120.08825 * 180.23468 * 4 3 2 6 6 C 1.50702 * 119.80703 * 179.76795 * 5 4 3 7 7 N 1.46902 * 109.47215 * 269.72898 * 6 5 4 8 8 C 1.47961 * 111.00005 * 169.99576 * 7 6 5 9 9 C 1.53934 * 86.17939 * 137.58072 * 8 7 6 10 10 C 1.50703 * 113.73399 * 221.81705 * 9 8 7 11 11 H 1.07999 * 119.99920 * 358.09577 * 10 9 8 12 12 C 1.37877 * 119.99669 * 178.10223 * 10 9 8 13 13 N 1.31510 * 120.00506 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 119.99624 * 179.97438 * 12 10 9 15 15 H 1.48499 * 109.47263 * 89.99888 * 14 12 10 16 16 H 1.48497 * 109.47123 * 209.99934 * 14 12 10 17 17 H 1.48502 * 109.47383 * 330.00011 * 14 12 10 18 18 C 1.48296 * 111.00409 * 269.34877 * 7 6 5 19 19 C 1.38515 * 120.39347 * 359.49557 * 5 4 3 20 20 C 1.37828 * 120.29128 * 0.27388 * 19 5 4 21 21 C 1.39708 * 119.90642 * 359.97438 * 20 19 5 22 22 C 1.43197 * 120.19418 * 180.02562 * 21 20 19 23 23 N 3.53302 * 165.92596 * 179.97438 * 2 1 3 24 24 H 1.08998 * 109.46957 * 60.00253 * 1 2 3 25 25 H 1.08996 * 109.47135 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.46897 * 300.00527 * 1 2 3 27 27 H 1.08000 * 119.96006 * 0.02562 * 4 3 2 28 28 H 1.09001 * 109.47251 * 149.72474 * 6 5 4 29 29 H 1.09004 * 109.46551 * 29.72840 * 6 5 4 30 30 H 1.09007 * 113.75652 * 23.26342 * 8 7 6 31 31 H 1.08993 * 113.76177 * 251.90248 * 8 7 6 32 32 H 1.09002 * 113.73279 * 90.64057 * 9 8 7 33 33 H 0.96995 * 120.00309 * 180.02562 * 13 12 10 34 34 H 1.09001 * 113.86054 * 108.14174 * 18 7 6 35 35 H 1.09000 * 113.76062 * 336.68481 * 18 7 6 36 36 H 1.07998 * 119.85831 * 180.25554 * 19 5 4 37 37 H 1.08008 * 120.04748 * 180.02562 * 20 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0451 1.2093 0.0000 4 6 1.2930 2.3739 0.0052 5 6 1.9211 3.6038 0.0003 6 6 1.0973 4.8657 0.0006 7 7 0.8300 5.2765 -1.3842 8 6 -0.1686 6.3673 -1.4304 9 6 0.7350 7.0101 -2.4981 10 6 0.8952 8.5002 -2.3398 11 1 0.3721 9.0187 -1.5498 12 6 1.7095 9.2016 -3.2035 13 7 2.3460 8.5704 -4.1658 14 14 1.9075 11.0488 -3.0077 15 1 3.0475 11.3308 -2.0989 16 1 2.1688 11.6620 -4.3347 17 1 0.6635 11.6219 -2.4339 18 6 1.8844 6.1942 -1.8794 19 6 3.3039 3.6845 0.0007 20 6 4.0673 2.5369 0.0003 21 6 3.4447 1.2862 0.0001 22 6 4.2317 0.0899 0.0002 23 7 4.8560 -0.8591 0.0004 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 0.2144 2.3193 0.0096 28 1 1.6438 5.6562 0.5151 29 1 0.1533 4.6831 0.5141 30 1 -0.2341 6.9420 -0.5066 31 1 -1.1421 6.0557 -1.8088 32 1 0.4871 6.7155 -3.5178 33 1 2.9191 9.0638 -4.7732 34 1 2.5500 5.7445 -2.6162 35 1 2.4180 6.7185 -1.0866 36 1 3.7862 4.6508 0.0010 37 1 5.1452 2.6043 0.0011 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597204222.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:24 Heat of formation + Delta-G solvation = 50.051391 kcal Electronic energy + Delta-G solvation = -19746.024375 eV Core-core repulsion = 16682.918044 eV Total energy + Delta-G solvation = -3063.106331 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.49908 -38.88901 -37.61047 -36.35650 -33.14394 -32.15272 -30.35995 -29.01499 -27.50794 -25.93184 -25.02910 -23.45087 -22.34128 -21.30373 -19.26110 -18.65224 -17.46973 -16.58899 -16.45116 -16.01160 -14.99686 -14.88985 -14.53613 -14.46005 -14.18083 -13.92734 -13.78073 -13.48381 -12.86194 -12.64438 -12.39041 -12.31263 -11.95545 -11.77417 -11.58917 -11.43393 -11.23304 -11.07551 -10.94215 -10.64333 -10.36710 -9.83941 -9.39678 -9.09551 -8.85850 -8.50528 -8.31923 -8.00279 -6.10304 -4.15500 0.75410 1.31399 2.71820 2.95665 2.98351 3.24730 3.32727 3.34952 3.80162 3.91480 4.35767 4.60087 4.71084 4.86362 4.97345 4.99791 5.12272 5.20389 5.26116 5.32028 5.38108 5.49288 5.63831 5.86406 5.99519 6.07297 6.17501 6.29102 6.37183 6.52579 6.55677 6.58657 6.68973 7.07012 7.08854 7.12583 7.55211 7.66711 7.83159 7.96609 8.29950 8.87176 9.50062 10.98939 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.029288 B = 0.003743 C = 0.003475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.801748 B = 7478.300167 C = 8054.796779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.314 6.314 3 C 0.173 3.827 4 C -0.195 4.195 5 C 0.015 3.985 6 C 0.048 3.952 7 N -0.485 5.485 8 C -0.002 4.002 9 C 0.039 3.961 10 C -0.521 4.521 11 H 0.057 0.943 12 C 0.067 3.933 13 N -0.885 5.885 14 Si 0.890 3.110 15 H -0.280 1.280 16 H -0.286 1.286 17 H -0.274 1.274 18 C 0.014 3.986 19 C -0.147 4.147 20 C -0.031 4.031 21 C -0.078 4.078 22 C 0.272 3.728 23 N -0.434 5.434 24 H 0.063 0.937 25 H 0.100 0.900 26 H 0.059 0.941 27 H 0.137 0.863 28 H 0.056 0.944 29 H 0.074 0.926 30 H 0.056 0.944 31 H 0.066 0.934 32 H 0.059 0.941 33 H 0.262 0.738 34 H 0.069 0.931 35 H 0.056 0.944 36 H 0.135 0.865 37 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.802 -10.888 9.609 14.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.227 6.227 3 C 0.125 3.875 4 C -0.214 4.214 5 C 0.013 3.987 6 C -0.081 4.081 7 N -0.208 5.208 8 C -0.130 4.130 9 C 0.020 3.980 10 C -0.559 4.559 11 H 0.076 0.924 12 C -0.136 4.136 13 N -0.522 5.522 14 Si 0.717 3.283 15 H -0.206 1.206 16 H -0.212 1.212 17 H -0.199 1.199 18 C -0.115 4.115 19 C -0.166 4.166 20 C -0.052 4.052 21 C -0.083 4.083 22 C -0.042 4.042 23 N -0.110 5.110 24 H 0.082 0.918 25 H 0.119 0.881 26 H 0.078 0.922 27 H 0.155 0.845 28 H 0.074 0.926 29 H 0.093 0.907 30 H 0.075 0.925 31 H 0.085 0.915 32 H 0.077 0.923 33 H 0.072 0.928 34 H 0.088 0.912 35 H 0.075 0.925 36 H 0.153 0.847 37 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -1.780 -13.155 9.128 16.110 hybrid contribution -0.112 2.195 0.549 2.266 sum -1.892 -10.959 9.677 14.742 Atomic orbital electron populations 1.23154 0.77563 1.04164 1.02088 1.86052 1.22111 1.26612 1.87885 1.18871 0.90302 0.84734 0.93625 1.21016 1.00374 0.90883 1.09138 1.19925 0.93679 0.94529 0.90565 1.21742 0.98375 0.93553 0.94389 1.68639 1.08175 1.29299 1.14655 1.24102 0.96553 0.91697 1.00651 1.20301 0.89314 0.94134 0.94261 1.21079 1.28048 0.92089 1.14679 0.92449 1.25003 0.95527 0.98232 0.94799 1.69956 1.29313 1.35871 1.17075 0.86636 0.78501 0.85621 0.77493 1.20645 1.21152 1.19854 1.24215 0.95979 0.92532 0.98745 1.20982 0.93194 0.98643 1.03785 1.20971 1.00178 0.89526 0.94494 1.15243 0.88123 0.88461 1.16459 1.25393 0.93038 0.92671 0.93128 1.81178 1.09442 1.10224 1.10177 0.91823 0.88145 0.92209 0.84485 0.92600 0.90720 0.92524 0.91505 0.92312 0.92818 0.91246 0.92546 0.84711 0.84449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.81 101.05 0.99 1.19 16 2 O -0.31 -3.71 9.93 -18.84 -0.19 -3.90 16 3 C 0.17 2.14 6.69 -38.71 -0.26 1.88 16 4 C -0.19 -2.32 8.67 -39.48 -0.34 -2.66 16 5 C 0.01 0.19 5.44 -104.57 -0.57 -0.38 16 6 C 0.05 0.68 4.92 -4.97 -0.02 0.66 16 7 N -0.48 -8.72 6.15 -239.48 -1.47 -10.19 16 8 C 0.00 -0.03 7.50 -2.76 -0.02 -0.05 16 9 C 0.04 0.91 3.60 -90.84 -0.33 0.59 16 10 C -0.52 -13.45 8.77 -34.44 -0.30 -13.75 16 11 H 0.06 1.46 7.81 -52.49 -0.41 1.05 16 12 C 0.07 1.78 5.46 -17.82 -0.10 1.69 16 13 N -0.88 -24.58 13.29 55.43 0.74 -23.84 16 14 Si 0.89 20.28 29.54 -169.99 -5.02 15.26 16 15 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 16 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 17 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 18 C 0.01 0.29 7.53 -2.57 -0.02 0.27 16 19 C -0.15 -1.81 9.67 -39.63 -0.38 -2.19 16 20 C -0.03 -0.35 9.75 -39.18 -0.38 -0.74 16 21 C -0.08 -0.99 5.75 -106.70 -0.61 -1.60 16 22 C 0.27 3.82 14.87 -22.48 -0.33 3.49 16 23 N -0.43 -6.82 18.54 41.84 0.78 -6.04 16 24 H 0.06 0.47 7.67 -51.93 -0.40 0.07 16 25 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.06 0.38 7.65 -51.93 -0.40 -0.01 16 27 H 0.14 1.40 6.30 -52.49 -0.33 1.07 16 28 H 0.06 0.80 7.32 -51.93 -0.38 0.42 16 29 H 0.07 0.95 8.02 -51.93 -0.42 0.53 16 30 H 0.06 1.04 7.88 -51.92 -0.41 0.63 16 31 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 32 H 0.06 1.53 8.14 -51.93 -0.42 1.11 16 33 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 34 H 0.07 1.54 8.14 -51.93 -0.42 1.12 16 35 H 0.06 1.18 7.43 -51.93 -0.39 0.79 16 36 H 0.14 1.58 8.06 -52.49 -0.42 1.16 16 37 H 0.14 1.25 8.06 -52.48 -0.42 0.83 16 LS Contribution 324.27 15.07 4.89 4.89 Total: -1.00 -29.19 324.27 -7.76 -36.95 By element: Atomic # 1 Polarization: 3.30 SS G_CDS: -4.80 Total: -1.50 kcal Atomic # 6 Polarization: -8.94 SS G_CDS: -2.68 Total: -11.63 kcal Atomic # 7 Polarization: -40.12 SS G_CDS: 0.04 Total: -40.08 kcal Atomic # 8 Polarization: -3.71 SS G_CDS: -0.19 Total: -3.90 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.02 Total: 15.26 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -29.19 -7.76 -36.95 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597204222.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.001 kcal (2) G-P(sol) polarization free energy of solvation -29.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.950 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds