Wall clock time and date at job start Mon Mar 30 2020 01:59:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35713 * 116.99554 * 2 1 4 4 C 1.38638 * 120.14938 * 0.24719 * 3 2 1 5 5 C 1.38108 * 120.08825 * 180.23468 * 4 3 2 6 6 C 1.50702 * 119.80703 * 179.76795 * 5 4 3 7 7 N 1.46902 * 109.47215 * 269.72898 * 6 5 4 8 8 C 1.47961 * 111.00005 * 169.99576 * 7 6 5 9 9 C 1.53934 * 86.17939 * 137.58072 * 8 7 6 10 10 C 1.50703 * 113.73399 * 221.81705 * 9 8 7 11 11 H 1.07999 * 119.99920 * 358.09577 * 10 9 8 12 12 C 1.37877 * 119.99669 * 178.10223 * 10 9 8 13 13 N 1.31510 * 120.00506 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 119.99624 * 179.97438 * 12 10 9 15 15 H 1.48499 * 109.47263 * 89.99888 * 14 12 10 16 16 H 1.48497 * 109.47123 * 209.99934 * 14 12 10 17 17 H 1.48502 * 109.47383 * 330.00011 * 14 12 10 18 18 C 1.48296 * 111.00409 * 269.34877 * 7 6 5 19 19 C 1.38515 * 120.39347 * 359.49557 * 5 4 3 20 20 C 1.37828 * 120.29128 * 0.27388 * 19 5 4 21 21 C 1.39708 * 119.90642 * 359.97438 * 20 19 5 22 22 C 1.43197 * 120.19418 * 180.02562 * 21 20 19 23 23 N 3.53302 * 165.92596 * 179.97438 * 2 1 3 24 24 H 1.08998 * 109.46957 * 60.00253 * 1 2 3 25 25 H 1.08996 * 109.47135 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.46897 * 300.00527 * 1 2 3 27 27 H 1.08000 * 119.96006 * 0.02562 * 4 3 2 28 28 H 1.09001 * 109.47251 * 149.72474 * 6 5 4 29 29 H 1.09004 * 109.46551 * 29.72840 * 6 5 4 30 30 H 1.09007 * 113.75652 * 23.26342 * 8 7 6 31 31 H 1.08993 * 113.76177 * 251.90248 * 8 7 6 32 32 H 1.09002 * 113.73279 * 90.64057 * 9 8 7 33 33 H 0.96995 * 120.00309 * 180.02562 * 13 12 10 34 34 H 1.09001 * 113.86054 * 108.14174 * 18 7 6 35 35 H 1.09000 * 113.76062 * 336.68481 * 18 7 6 36 36 H 1.07998 * 119.85831 * 180.25554 * 19 5 4 37 37 H 1.08008 * 120.04748 * 180.02562 * 20 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0451 1.2093 0.0000 4 6 1.2930 2.3739 0.0052 5 6 1.9211 3.6038 0.0003 6 6 1.0973 4.8657 0.0006 7 7 0.8300 5.2765 -1.3842 8 6 -0.1686 6.3673 -1.4304 9 6 0.7350 7.0101 -2.4981 10 6 0.8952 8.5002 -2.3398 11 1 0.3721 9.0187 -1.5498 12 6 1.7095 9.2016 -3.2035 13 7 2.3460 8.5704 -4.1658 14 14 1.9075 11.0488 -3.0077 15 1 3.0475 11.3308 -2.0989 16 1 2.1688 11.6620 -4.3347 17 1 0.6635 11.6219 -2.4339 18 6 1.8844 6.1942 -1.8794 19 6 3.3039 3.6845 0.0007 20 6 4.0673 2.5369 0.0003 21 6 3.4447 1.2862 0.0001 22 6 4.2317 0.0899 0.0002 23 7 4.8560 -0.8591 0.0004 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 0.2144 2.3193 0.0096 28 1 1.6438 5.6562 0.5151 29 1 0.1533 4.6831 0.5141 30 1 -0.2341 6.9420 -0.5066 31 1 -1.1421 6.0557 -1.8088 32 1 0.4871 6.7155 -3.5178 33 1 2.9191 9.0638 -4.7732 34 1 2.5500 5.7445 -2.6162 35 1 2.4180 6.7185 -1.0866 36 1 3.7862 4.6508 0.0010 37 1 5.1452 2.6043 0.0011 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597204222.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:23 Heat of formation + Delta-G solvation = 32.117807 kcal Electronic energy + Delta-G solvation = -19746.802034 eV Core-core repulsion = 16682.918044 eV Total energy + Delta-G solvation = -3063.883990 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.44218 -40.31837 -38.58733 -37.49466 -34.81338 -33.54444 -31.26076 -30.39823 -28.29901 -27.49663 -26.62163 -24.90101 -23.24472 -22.53207 -20.38118 -20.18921 -18.71204 -18.13883 -17.40137 -16.83535 -16.64688 -16.30126 -15.79299 -15.65764 -15.40848 -14.97832 -14.85945 -14.72395 -14.05533 -13.92071 -13.76313 -13.38220 -13.21495 -13.14925 -12.92503 -12.78797 -12.54474 -12.37972 -12.19181 -12.02982 -11.82529 -11.48674 -11.10399 -10.87179 -10.47906 -9.88153 -9.53772 -9.25331 -8.10423 -6.21399 -0.23855 0.40271 1.45109 1.47236 1.56350 1.62524 1.90178 2.20875 2.45973 2.78971 2.88842 3.19895 3.39887 3.69646 3.87215 4.11815 4.24851 4.32034 4.37132 4.43573 4.46273 4.50445 4.59006 4.70110 4.77585 4.84101 4.87849 4.94688 5.05682 5.11709 5.24504 5.35166 5.46320 5.65491 5.69384 5.70421 5.91710 6.23291 6.35190 6.42836 6.48497 6.88322 7.47343 8.98598 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.029288 B = 0.003743 C = 0.003475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.801748 B = 7478.300167 C = 8054.796779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.332 6.332 3 C 0.173 3.827 4 C -0.191 4.191 5 C 0.003 3.997 6 C 0.049 3.951 7 N -0.482 5.482 8 C 0.015 3.985 9 C 0.015 3.985 10 C -0.530 4.530 11 H 0.060 0.940 12 C 0.016 3.984 13 N -0.921 5.921 14 Si 0.952 3.048 15 H -0.274 1.274 16 H -0.288 1.288 17 H -0.266 1.266 18 C 0.028 3.972 19 C -0.155 4.155 20 C -0.022 4.022 21 C -0.091 4.091 22 C 0.289 3.711 23 N -0.469 5.469 24 H 0.067 0.933 25 H 0.119 0.881 26 H 0.075 0.925 27 H 0.156 0.844 28 H 0.058 0.942 29 H 0.099 0.901 30 H 0.068 0.932 31 H 0.080 0.920 32 H 0.021 0.979 33 H 0.261 0.739 34 H 0.048 0.952 35 H 0.056 0.944 36 H 0.138 0.862 37 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.702 -10.777 11.113 15.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.244 6.244 3 C 0.124 3.876 4 C -0.210 4.210 5 C 0.002 3.998 6 C -0.079 4.079 7 N -0.204 5.204 8 C -0.114 4.114 9 C -0.004 4.004 10 C -0.569 4.569 11 H 0.078 0.922 12 C -0.183 4.183 13 N -0.560 5.560 14 Si 0.778 3.222 15 H -0.200 1.200 16 H -0.214 1.214 17 H -0.190 1.190 18 C -0.101 4.101 19 C -0.174 4.174 20 C -0.043 4.043 21 C -0.095 4.095 22 C -0.025 4.025 23 N -0.146 5.146 24 H 0.085 0.915 25 H 0.137 0.863 26 H 0.094 0.906 27 H 0.174 0.826 28 H 0.076 0.924 29 H 0.117 0.883 30 H 0.087 0.913 31 H 0.099 0.901 32 H 0.040 0.960 33 H 0.070 0.930 34 H 0.067 0.933 35 H 0.075 0.925 36 H 0.156 0.844 37 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -2.701 -13.051 10.650 17.060 hybrid contribution 0.094 2.097 0.092 2.101 sum -2.607 -10.955 10.742 15.563 Atomic orbital electron populations 1.23460 0.75497 1.05847 1.03030 1.86046 1.24315 1.26433 1.87651 1.18952 0.90258 0.85218 0.93135 1.21138 1.01289 0.90159 1.08404 1.19908 0.93894 0.94403 0.91600 1.21775 0.99964 0.94104 0.92041 1.68532 1.06362 1.27953 1.17546 1.23950 0.96631 0.91424 0.99353 1.20309 0.92570 0.93664 0.93835 1.21457 1.27430 0.93568 1.14409 0.92173 1.25766 0.95467 1.02434 0.94651 1.70084 1.30354 1.37430 1.18111 0.85646 0.78713 0.80587 0.77248 1.20013 1.21413 1.19032 1.23891 0.95436 0.92595 0.98180 1.21088 0.93233 0.99076 1.04022 1.21148 1.01236 0.88690 0.93192 1.15412 0.88439 0.88260 1.17413 1.25590 0.92342 0.92492 0.92096 1.81186 1.10572 1.11245 1.11626 0.91453 0.86284 0.90596 0.82634 0.92388 0.88308 0.91342 0.90147 0.96033 0.93006 0.93337 0.92542 0.84441 0.82392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.81 113.37 1.11 1.31 16 2 O -0.33 -7.25 9.93 -90.34 -0.90 -8.15 16 3 C 0.17 3.97 6.69 22.83 0.15 4.12 16 4 C -0.19 -4.08 8.67 22.33 0.19 -3.88 16 5 C 0.00 0.08 5.44 -19.83 -0.11 -0.03 16 6 C 0.05 1.28 4.92 85.56 0.42 1.70 16 7 N -0.48 -16.56 6.15 -911.59 -5.61 -22.17 16 8 C 0.01 0.54 7.50 86.41 0.65 1.18 16 9 C 0.02 0.72 3.60 -10.89 -0.04 0.68 16 10 C -0.53 -27.37 8.77 25.60 0.22 -27.14 16 11 H 0.06 2.99 7.81 -2.91 -0.02 2.97 16 12 C 0.02 0.86 5.46 84.66 0.46 1.32 16 13 N -0.92 -52.16 13.29 21.45 0.28 -51.88 16 14 Si 0.95 41.52 29.54 68.60 2.03 43.55 16 15 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 16 H -0.29 -12.58 7.11 99.48 0.71 -11.88 16 17 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 18 C 0.03 1.17 7.53 86.34 0.65 1.82 16 19 C -0.16 -3.57 9.67 22.24 0.22 -3.36 16 20 C -0.02 -0.47 9.75 22.53 0.22 -0.25 16 21 C -0.09 -2.16 5.75 -21.21 -0.12 -2.28 16 22 C 0.29 7.87 14.87 88.33 1.31 9.18 16 23 N -0.47 -14.57 18.54 19.00 0.35 -14.22 16 24 H 0.07 0.84 7.67 -2.39 -0.02 0.82 16 25 H 0.12 1.08 8.14 -2.39 -0.02 1.06 16 26 H 0.08 0.75 7.65 -2.38 -0.02 0.73 16 27 H 0.16 2.67 6.30 -2.91 -0.02 2.65 16 28 H 0.06 1.52 7.32 -2.39 -0.02 1.50 16 29 H 0.10 2.13 8.02 -2.39 -0.02 2.11 16 30 H 0.07 2.33 7.88 -2.38 -0.02 2.32 16 31 H 0.08 2.71 8.14 -2.39 -0.02 2.69 16 32 H 0.02 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.26 14.11 8.31 -92.71 -0.77 13.34 16 34 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 35 H 0.06 2.33 7.43 -2.39 -0.02 2.32 16 36 H 0.14 3.05 8.06 -2.91 -0.02 3.03 16 37 H 0.16 2.58 8.06 -2.91 -0.02 2.56 16 Total: -1.00 -62.88 324.27 2.58 -60.30 By element: Atomic # 1 Polarization: 7.11 SS G_CDS: 1.07 Total: 8.18 kcal Atomic # 6 Polarization: -20.97 SS G_CDS: 5.34 Total: -15.62 kcal Atomic # 7 Polarization: -83.30 SS G_CDS: -4.97 Total: -88.27 kcal Atomic # 8 Polarization: -7.25 SS G_CDS: -0.90 Total: -8.15 kcal Atomic # 14 Polarization: 41.52 SS G_CDS: 2.03 Total: 43.55 kcal Total: -62.88 2.58 -60.30 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597204222.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.422 kcal (2) G-P(sol) polarization free energy of solvation -62.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.304 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds