Wall clock time and date at job start Mon Mar 30 2020 02:01:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42898 * 113.99663 * 2 1 4 4 C 1.53002 * 109.46847 * 180.02562 * 3 2 1 5 5 C 1.50703 * 109.47424 * 180.02562 * 4 3 2 6 6 C 1.38349 * 119.93673 * 270.02194 * 5 4 3 7 7 C 1.38306 * 120.24418 * 179.97438 * 6 5 4 8 8 C 1.38036 * 120.12326 * 359.72866 * 7 6 5 9 9 C 1.39332 * 119.86965 * 0.52253 * 8 7 6 10 10 C 1.48412 * 120.11573 * 179.74354 * 9 8 7 11 11 C 1.41160 * 126.19990 * 179.70006 * 10 9 8 12 12 N 1.30729 * 108.28273 * 180.02562 * 11 10 9 13 13 N 1.40021 * 108.59649 * 0.02562 * 12 11 10 14 14 C 1.37307 * 125.96549 * 180.02562 * 13 12 11 15 15 H 1.08002 * 120.00270 * 180.02562 * 14 13 12 16 16 C 1.39014 * 119.99892 * 359.74959 * 14 13 12 17 17 N 1.31274 * 120.00077 * 0.27647 * 16 14 13 18 18 Si 1.86794 * 119.99756 * 180.27798 * 16 14 13 19 19 H 1.48506 * 109.47402 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.47356 * 120.00165 * 18 16 14 21 21 H 1.48498 * 109.46940 * 239.99945 * 18 16 14 22 22 C 1.36089 * 108.06559 * 0.26414 * 13 12 11 23 23 C 1.37988 * 119.93922 * 89.99356 * 5 4 3 24 24 H 1.09000 * 109.46767 * 299.99835 * 1 2 3 25 25 H 1.08992 * 109.47122 * 60.00148 * 1 2 3 26 26 H 1.09000 * 109.47017 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47505 * 60.00541 * 3 2 1 28 28 H 1.08993 * 109.47327 * 299.99754 * 3 2 1 29 29 H 1.08997 * 109.47453 * 59.99810 * 4 3 2 30 30 H 1.09010 * 109.47007 * 299.99781 * 4 3 2 31 31 H 1.08005 * 119.87679 * 0.02562 * 6 5 4 32 32 H 1.08002 * 119.93491 * 180.02562 * 7 6 5 33 33 H 1.07989 * 120.06340 * 180.29145 * 8 7 6 34 34 H 1.08005 * 125.85719 * 0.02562 * 11 10 9 35 35 H 0.96996 * 120.00251 * 179.97438 * 17 16 14 36 36 H 1.08008 * 126.26833 * 179.73725 * 22 13 12 37 37 H 1.07998 * 120.06307 * 359.97438 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 4.1485 2.5614 0.0000 6 6 4.4284 3.1930 -1.1986 7 6 4.9905 4.4567 -1.2055 8 6 5.2701 5.0970 -0.0150 9 6 4.9951 4.4633 1.1950 10 6 5.2987 5.1443 2.4782 11 6 5.0687 4.6272 3.7714 12 7 5.4642 5.5159 4.6448 13 7 5.9591 6.6298 3.9557 14 6 6.4671 7.7707 4.5262 15 1 6.8239 8.5750 3.8999 16 6 6.5169 7.8930 5.9101 17 7 6.0833 6.9154 6.6714 18 14 7.2009 9.4483 6.6862 19 1 7.6208 10.3911 5.6183 20 1 6.1539 10.0846 7.5253 21 1 8.3724 9.1056 7.5319 22 6 5.8438 6.3863 2.6217 23 6 4.4289 3.1898 1.1960 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 1.6887 1.8464 0.8900 28 1 1.6886 1.8463 -0.8899 29 1 3.8568 0.6439 -0.8908 30 1 3.8574 0.6436 0.8892 31 1 4.2065 2.6978 -2.1324 32 1 5.2067 4.9454 -2.1441 33 1 5.7047 6.0856 -0.0214 34 1 4.6396 3.6628 4.0000 35 1 6.1184 7.0006 7.6370 36 1 6.1338 7.0530 1.8231 37 1 4.2091 2.6962 2.1311 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600779438.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:10 Heat of formation + Delta-G solvation = 25.978465 kcal Electronic energy + Delta-G solvation = -19397.488910 eV Core-core repulsion = 16333.338698 eV Total energy + Delta-G solvation = -3064.150212 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.51856 -39.99272 -38.67989 -35.62660 -34.43929 -32.91418 -31.96556 -30.18509 -29.02488 -27.10331 -26.92862 -24.39189 -23.55075 -22.69757 -21.75569 -20.30929 -19.25009 -17.72843 -17.39968 -17.03999 -16.93879 -16.11820 -15.95085 -15.71353 -15.44714 -15.34483 -14.86951 -14.20697 -13.95875 -13.83196 -13.69602 -13.47837 -13.25770 -12.95869 -12.80220 -12.67921 -12.35724 -12.11878 -12.07783 -11.85626 -11.65931 -11.42886 -10.73249 -10.61244 -10.33658 -10.10537 -9.55615 -8.53055 -8.52151 -6.31668 0.40956 0.60557 1.30615 1.37494 1.56096 1.78017 2.09557 2.29876 2.77818 2.83941 3.02973 3.29132 3.93960 4.06775 4.16194 4.24832 4.26149 4.31992 4.49868 4.53475 4.54392 4.58271 4.65370 4.70032 4.73229 4.85890 4.91500 5.03489 5.06154 5.14576 5.26113 5.37060 5.48257 5.71654 5.81126 5.89053 6.04702 6.21901 6.22104 6.30961 6.69735 7.39518 7.60736 8.46546 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.029496 B = 0.003467 C = 0.003177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.066906 B = 8075.228298 C = 8811.640001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.414 6.414 3 C 0.069 3.931 4 C -0.070 4.070 5 C -0.076 4.076 6 C -0.142 4.142 7 C -0.106 4.106 8 C -0.149 4.149 9 C 0.022 3.978 10 C -0.246 4.246 11 C -0.033 4.033 12 N -0.313 5.313 13 N -0.172 5.172 14 C -0.362 4.362 15 H 0.136 0.864 16 C -0.003 4.003 17 N -0.821 5.821 18 Si 1.018 2.982 19 H -0.244 1.244 20 H -0.270 1.270 21 H -0.270 1.270 22 C -0.048 4.048 23 C -0.141 4.141 24 H 0.043 0.957 25 H 0.052 0.948 26 H 0.100 0.900 27 H 0.043 0.957 28 H 0.061 0.939 29 H 0.092 0.908 30 H 0.073 0.927 31 H 0.145 0.855 32 H 0.147 0.853 33 H 0.120 0.880 34 H 0.173 0.827 35 H 0.278 0.722 36 H 0.174 0.826 37 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.851 -6.239 -13.998 16.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.334 6.334 3 C -0.007 4.007 4 C -0.107 4.107 5 C -0.076 4.076 6 C -0.160 4.160 7 C -0.123 4.123 8 C -0.168 4.168 9 C 0.021 3.979 10 C -0.260 4.260 11 C -0.210 4.210 12 N -0.141 5.141 13 N 0.063 4.937 14 C -0.492 4.492 15 H 0.154 0.846 16 C -0.215 4.215 17 N -0.449 5.449 18 Si 0.837 3.163 19 H -0.167 1.167 20 H -0.195 1.195 21 H -0.195 1.195 22 C -0.199 4.199 23 C -0.160 4.160 24 H 0.061 0.939 25 H 0.070 0.930 26 H 0.118 0.882 27 H 0.061 0.939 28 H 0.079 0.921 29 H 0.111 0.889 30 H 0.091 0.909 31 H 0.162 0.838 32 H 0.165 0.835 33 H 0.138 0.862 34 H 0.190 0.810 35 H 0.088 0.912 36 H 0.192 0.808 37 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -5.633 -6.155 -12.451 14.988 hybrid contribution -0.046 0.591 0.095 0.601 sum -5.679 -5.564 -12.355 14.692 Atomic orbital electron populations 1.22926 0.79592 1.03878 1.00719 1.87807 1.21403 1.28581 1.95603 1.22494 0.93303 0.84216 1.00715 1.20388 0.93012 0.93048 1.04288 1.19648 0.99211 0.95914 0.92871 1.21212 1.01455 0.95668 0.97678 1.21274 0.98060 0.95192 0.97803 1.21262 1.03006 1.00609 0.91920 1.18279 0.95459 0.93294 0.90904 1.18678 1.17717 0.96776 0.92784 1.24077 1.05189 1.00272 0.91490 1.77979 1.20577 0.95231 1.20274 1.45069 1.34082 1.11160 1.03363 1.20661 1.42350 0.93563 0.92648 0.84619 1.26852 0.95593 1.02599 0.96467 1.70359 1.36149 1.32491 1.05899 0.84550 0.77820 0.75420 0.78527 1.16654 1.19528 1.19546 1.22617 1.10763 0.99587 0.86885 1.21012 1.02102 0.94816 0.98077 0.93871 0.92973 0.88184 0.93871 0.92109 0.88950 0.90866 0.83755 0.83546 0.86216 0.81014 0.91240 0.80841 0.86999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.40 11.01 113.37 1.25 1.65 16 2 O -0.41 -9.40 10.70 -148.98 -1.59 -11.00 16 3 C 0.07 1.52 5.92 71.98 0.43 1.94 16 4 C -0.07 -1.59 5.71 29.85 0.17 -1.42 16 5 C -0.08 -2.06 5.13 -19.90 -0.10 -2.16 16 6 C -0.14 -3.39 9.69 22.31 0.22 -3.17 16 7 C -0.11 -2.67 10.03 22.24 0.22 -2.45 16 8 C -0.15 -4.79 9.57 22.49 0.22 -4.58 16 9 C 0.02 0.84 5.88 -20.03 -0.12 0.72 16 10 C -0.25 -11.38 6.04 -20.28 -0.12 -11.50 16 11 C -0.03 -1.69 11.42 85.57 0.98 -0.71 16 12 N -0.31 -18.26 10.36 -56.21 -0.58 -18.84 16 13 N -0.17 -9.60 3.72 -189.78 -0.71 -10.30 16 14 C -0.36 -19.39 10.24 84.02 0.86 -18.53 16 15 H 0.14 6.43 7.83 -2.91 -0.02 6.41 16 16 C 0.00 -0.16 5.50 84.96 0.47 0.30 16 17 N -0.82 -46.73 11.80 21.67 0.26 -46.47 16 18 Si 1.02 38.57 29.55 68.60 2.03 40.59 16 19 H -0.24 -8.38 7.11 99.48 0.71 -7.68 16 20 H -0.27 -10.00 7.11 99.48 0.71 -9.30 16 21 H -0.27 -10.02 7.11 99.48 0.71 -9.31 16 22 C -0.05 -2.31 10.84 83.60 0.91 -1.41 16 23 C -0.14 -4.75 9.23 22.48 0.21 -4.54 16 24 H 0.04 0.67 8.14 -2.39 -0.02 0.65 16 25 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 26 H 0.10 1.24 8.14 -2.39 -0.02 1.23 16 27 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 28 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 29 H 0.09 1.80 8.08 -2.39 -0.02 1.78 16 30 H 0.07 1.74 8.08 -2.38 -0.02 1.72 16 31 H 0.14 2.52 8.06 -2.91 -0.02 2.50 16 32 H 0.15 2.73 8.06 -2.91 -0.02 2.71 16 33 H 0.12 3.65 7.02 -2.92 -0.02 3.63 16 34 H 0.17 7.57 7.35 -2.91 -0.02 7.54 16 35 H 0.28 14.43 8.31 -92.71 -0.77 13.66 16 36 H 0.17 7.06 7.29 -2.91 -0.02 7.04 16 37 H 0.11 3.76 7.05 -2.91 -0.02 3.74 16 Total: -1.00 -68.73 321.51 6.04 -62.69 By element: Atomic # 1 Polarization: 28.10 SS G_CDS: 1.06 Total: 29.16 kcal Atomic # 6 Polarization: -51.41 SS G_CDS: 5.58 Total: -45.84 kcal Atomic # 7 Polarization: -74.58 SS G_CDS: -1.03 Total: -75.62 kcal Atomic # 8 Polarization: -9.40 SS G_CDS: -1.59 Total: -11.00 kcal Atomic # 14 Polarization: 38.57 SS G_CDS: 2.03 Total: 40.59 kcal Total: -68.73 6.04 -62.69 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600779438.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.672 kcal (2) G-P(sol) polarization free energy of solvation -68.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.694 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds