Wall clock time and date at job start Mon Mar 30 2020 02:01:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42891 * 114.00202 * 2 1 4 4 C 1.52994 * 109.47403 * 180.02562 * 3 2 1 5 5 C 1.50694 * 109.47715 * 179.97438 * 4 3 2 6 6 C 1.38327 * 119.87866 * 89.99965 * 5 4 3 7 7 C 1.38008 * 120.12432 * 180.02562 * 6 5 4 8 8 C 1.39352 * 119.87729 * 359.97438 * 7 6 5 9 9 C 1.48400 * 120.12295 * 179.97438 * 8 7 6 10 10 C 1.41168 * 126.19899 * 0.02562 * 9 8 7 11 11 N 1.30739 * 108.28354 * 179.72380 * 10 9 8 12 12 N 1.40024 * 108.58995 * 0.41122 * 11 10 9 13 13 C 1.37315 * 125.96094 * 179.85386 * 12 11 10 14 14 H 1.07999 * 119.99871 * 179.69018 * 13 12 11 15 15 C 1.39001 * 120.00011 * 359.68513 * 13 12 11 16 16 N 1.31281 * 120.00357 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00021 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.46879 * 60.00278 * 17 15 13 19 19 H 1.48503 * 109.47151 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.47086 * 300.00221 * 17 15 13 21 21 C 1.36086 * 108.06876 * 359.58355 * 12 11 10 22 22 C 1.39351 * 119.75680 * 0.25378 * 8 7 6 23 23 C 1.38015 * 119.87138 * 359.47336 * 22 8 7 24 24 H 1.08997 * 109.47025 * 59.99450 * 1 2 3 25 25 H 1.09000 * 109.47329 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.46545 * 299.99677 * 1 2 3 27 27 H 1.09000 * 109.47262 * 60.00136 * 3 2 1 28 28 H 1.09001 * 109.47055 * 300.00326 * 3 2 1 29 29 H 1.09000 * 109.46872 * 59.99809 * 4 3 2 30 30 H 1.08996 * 109.47189 * 300.00630 * 4 3 2 31 31 H 1.08000 * 119.94024 * 0.02562 * 6 5 4 32 32 H 1.08006 * 120.06254 * 180.02562 * 7 6 5 33 33 H 1.08000 * 125.86085 * 0.02562 * 10 9 8 34 34 H 0.97000 * 120.00849 * 179.97438 * 16 15 13 35 35 H 1.08007 * 126.26668 * 180.22086 * 21 12 11 36 36 H 1.08003 * 120.06114 * 179.72349 * 22 8 7 37 37 H 1.08003 * 119.93116 * 180.24742 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 4.1485 2.5612 -0.0013 6 6 4.4294 3.1910 1.1978 7 6 4.9903 4.4519 1.2032 8 6 5.2743 5.0905 -0.0024 9 6 5.8770 6.4466 -0.0031 10 6 6.2161 7.2088 1.1358 11 7 6.7265 8.3430 0.7331 12 7 6.7276 8.3599 -0.6671 13 6 7.1833 9.3837 -1.4607 14 1 7.1428 9.2923 -2.5361 15 6 7.6965 10.5376 -0.8801 16 7 7.7460 10.6486 0.4271 17 14 8.3156 11.9306 -1.9598 18 1 7.2073 12.4227 -2.8169 19 1 8.8081 13.0394 -1.1034 20 1 9.4231 11.4374 -2.8174 21 6 6.2039 7.1823 -1.1038 22 6 4.9849 4.4533 -1.2075 23 6 4.4292 3.1900 -1.2010 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 1.6887 1.8463 0.8900 28 1 1.6886 1.8463 -0.8900 29 1 3.8567 0.6438 -0.8909 30 1 3.8574 0.6434 0.8890 31 1 4.2093 2.6951 2.1317 32 1 5.2096 4.9426 2.1400 33 1 6.0818 6.9049 2.1634 34 1 8.1045 11.4537 0.8323 35 1 6.0712 6.8850 -2.1336 36 1 5.1988 4.9455 -2.1447 37 1 4.2082 2.6937 -2.1344 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600779693.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:13 Heat of formation + Delta-G solvation = 42.643395 kcal Electronic energy + Delta-G solvation = -19201.357860 eV Core-core repulsion = 16137.930293 eV Total energy + Delta-G solvation = -3063.427566 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.74515 -38.74685 -37.75968 -33.98874 -33.13834 -30.74601 -30.40595 -29.64520 -27.46742 -26.22466 -24.97079 -23.10129 -22.38339 -20.89129 -20.25111 -19.03846 -17.54638 -16.67007 -16.12354 -15.77908 -15.37191 -15.06613 -14.57214 -14.52539 -14.15716 -13.47138 -13.21179 -13.11831 -12.80925 -12.65061 -12.46285 -11.82791 -11.72845 -11.67633 -11.32994 -11.28803 -11.21544 -11.02916 -10.78409 -10.53212 -10.31709 -9.79796 -9.64975 -8.87877 -8.68575 -8.45770 -8.22322 -6.82185 -6.68520 -4.37464 1.69739 1.91978 2.91740 2.98998 3.02621 3.46241 3.66264 3.74600 3.98064 4.59321 4.70554 4.93282 4.94238 5.03643 5.14462 5.18141 5.31548 5.36948 5.42545 5.44818 5.51280 5.68538 5.75461 5.96591 6.02247 6.15035 6.15532 6.32871 6.53134 6.65943 6.75696 6.90640 7.00043 7.02625 7.05181 7.13275 7.54895 7.59658 7.73229 8.04605 8.54232 9.23790 9.49155 10.27323 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.049835 B = 0.002942 C = 0.002865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 561.720968 B = 9514.534214 C = 9769.518811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.397 6.397 3 C 0.065 3.935 4 C -0.067 4.067 5 C -0.134 4.134 6 C -0.102 4.102 7 C -0.141 4.141 8 C 0.059 3.941 9 C -0.257 4.257 10 C -0.014 4.014 11 N -0.264 5.264 12 N -0.142 5.142 13 C -0.327 4.327 14 H 0.118 0.882 15 C 0.048 3.952 16 N -0.769 5.769 17 Si 0.936 3.064 18 H -0.265 1.265 19 H -0.276 1.276 20 H -0.265 1.265 21 C -0.040 4.040 22 C -0.143 4.143 23 C -0.102 4.102 24 H 0.040 0.960 25 H 0.083 0.917 26 H 0.040 0.960 27 H 0.050 0.950 28 H 0.050 0.950 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.112 0.888 32 H 0.117 0.883 33 H 0.155 0.845 34 H 0.277 0.723 35 H 0.148 0.852 36 H 0.116 0.884 37 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.483 -12.787 -1.688 15.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.316 6.316 3 C -0.011 4.011 4 C -0.105 4.105 5 C -0.134 4.134 6 C -0.120 4.120 7 C -0.160 4.160 8 C 0.057 3.943 9 C -0.270 4.270 10 C -0.192 4.192 11 N -0.091 5.091 12 N 0.095 4.905 13 C -0.459 4.459 14 H 0.136 0.864 15 C -0.170 4.170 16 N -0.395 5.395 17 Si 0.760 3.240 18 H -0.190 1.190 19 H -0.200 1.200 20 H -0.190 1.190 21 C -0.192 4.192 22 C -0.162 4.162 23 C -0.120 4.120 24 H 0.059 0.941 25 H 0.102 0.898 26 H 0.059 0.941 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.092 0.908 30 H 0.092 0.908 31 H 0.130 0.870 32 H 0.135 0.865 33 H 0.172 0.828 34 H 0.088 0.912 35 H 0.165 0.835 36 H 0.134 0.866 37 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -7.750 -11.560 -1.131 13.964 hybrid contribution -0.305 0.138 -0.707 0.782 sum -8.056 -11.421 -1.838 14.097 Atomic orbital electron populations 1.22715 0.81247 1.02473 1.00016 1.87843 1.19556 1.28701 1.95477 1.22614 0.93985 0.83969 1.00527 1.20314 0.92351 0.94446 1.03340 1.19364 1.04488 0.96030 0.93535 1.20808 0.99293 0.95087 0.96795 1.21031 1.02048 0.95143 0.97753 1.18304 0.92143 0.91576 0.92271 1.18282 1.19477 0.96463 0.92823 1.23691 1.03609 0.93941 0.97933 1.78115 1.23679 1.18748 0.88509 1.44822 1.32154 1.09340 1.04220 1.19942 1.41643 0.93920 0.90368 0.86409 1.25677 0.95924 0.99134 0.96276 1.70182 1.33148 1.26784 1.09385 0.85866 0.79568 0.79226 0.79389 1.19016 1.20034 1.19000 1.22007 1.09581 0.89519 0.98102 1.21055 1.02241 0.95173 0.97713 1.20805 0.99328 0.95064 0.96782 0.94134 0.89825 0.94137 0.93158 0.93176 0.90830 0.90815 0.86990 0.86458 0.82816 0.91245 0.83497 0.86582 0.87027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 101.05 1.11 1.38 16 2 O -0.40 -4.61 10.70 -35.23 -0.38 -4.99 16 3 C 0.07 0.74 5.92 37.15 0.22 0.96 16 4 C -0.07 -0.79 5.71 -27.89 -0.16 -0.95 16 5 C -0.13 -1.87 5.14 -104.56 -0.54 -2.41 16 6 C -0.10 -1.50 9.68 -39.63 -0.38 -1.88 16 7 C -0.14 -2.40 9.58 -39.25 -0.38 -2.78 16 8 C 0.06 1.13 5.88 -104.88 -0.62 0.51 16 9 C -0.26 -5.80 6.04 -105.27 -0.64 -6.44 16 10 C -0.01 -0.34 11.42 -16.91 -0.19 -0.53 16 11 N -0.26 -7.31 10.36 30.88 0.32 -6.99 16 12 N -0.14 -3.83 3.72 -11.34 -0.04 -3.87 16 13 C -0.33 -8.49 10.24 -14.81 -0.15 -8.64 16 14 H 0.12 2.73 7.83 -52.49 -0.41 2.32 16 15 C 0.05 1.20 5.50 -17.50 -0.10 1.10 16 16 N -0.77 -20.86 11.80 55.50 0.66 -20.20 16 17 Si 0.94 18.48 29.55 -169.99 -5.02 13.45 16 18 H -0.27 -5.10 7.11 56.52 0.40 -4.70 16 19 H -0.28 -5.37 7.11 56.52 0.40 -4.97 16 20 H -0.27 -5.10 7.11 56.52 0.40 -4.70 16 21 C -0.04 -0.95 10.84 -16.34 -0.18 -1.12 16 22 C -0.14 -2.43 9.57 -39.25 -0.38 -2.81 16 23 C -0.10 -1.50 9.68 -39.63 -0.38 -1.88 16 24 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 25 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 27 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.07 0.83 8.08 -51.93 -0.42 0.41 16 30 H 0.07 0.83 8.08 -51.93 -0.42 0.41 16 31 H 0.11 1.39 8.06 -52.49 -0.42 0.96 16 32 H 0.12 1.89 7.05 -52.48 -0.37 1.52 16 33 H 0.15 3.19 7.35 -52.49 -0.39 2.80 16 34 H 0.28 6.87 8.31 -40.82 -0.34 6.53 16 35 H 0.15 2.99 7.29 -52.48 -0.38 2.60 16 36 H 0.12 1.87 7.02 -52.48 -0.37 1.50 16 37 H 0.11 1.38 8.06 -52.48 -0.42 0.96 16 LS Contribution 321.50 15.07 4.84 4.84 Total: -1.00 -30.20 321.50 -7.23 -37.43 By element: Atomic # 1 Polarization: 10.66 SS G_CDS: -4.85 Total: 5.81 kcal Atomic # 6 Polarization: -22.73 SS G_CDS: -2.75 Total: -25.49 kcal Atomic # 7 Polarization: -31.99 SS G_CDS: 0.93 Total: -31.06 kcal Atomic # 8 Polarization: -4.61 SS G_CDS: -0.38 Total: -4.99 kcal Atomic # 14 Polarization: 18.48 SS G_CDS: -5.02 Total: 13.45 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -30.20 -7.23 -37.43 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600779693.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.071 kcal (2) G-P(sol) polarization free energy of solvation -30.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.427 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds