Wall clock time and date at job start Mon Mar 30 2020 01:42:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46497 * 109.46845 * 2 1 4 4 C 1.46507 * 119.99882 * 274.94660 * 3 2 1 5 5 C 1.53001 * 109.46945 * 270.00059 * 4 3 2 6 6 C 1.47195 * 109.46971 * 179.97438 * 5 4 3 7 7 N 5.65201 * 113.83867 * 307.91329 * 2 1 3 8 8 C 1.34777 * 120.00403 * 94.94924 * 3 2 1 9 9 O 1.21609 * 120.00177 * 185.85434 * 8 3 2 10 10 C 1.47434 * 119.99743 * 5.84559 * 8 3 2 11 11 C 1.39224 * 120.28069 * 55.09908 * 10 8 3 12 12 C 1.38222 * 120.09220 * 180.27786 * 11 10 8 13 13 C 1.38825 * 120.67433 * 359.69682 * 12 11 10 14 14 C 1.37602 * 120.57192 * 0.02562 * 13 12 11 15 15 C 1.40701 * 119.87842 * 0.02562 * 14 13 12 16 16 C 1.40891 * 120.32766 * 179.97438 * 15 14 13 17 17 H 1.07997 * 120.00477 * 214.97785 * 16 15 14 18 18 C 1.40277 * 120.00001 * 34.97652 * 16 15 14 19 19 N 1.30628 * 120.00175 * 185.74570 * 18 16 15 20 20 Si 1.86798 * 119.99813 * 5.75179 * 18 16 15 21 21 H 1.48505 * 109.47195 * 265.24239 * 20 18 16 22 22 H 1.48498 * 109.47453 * 25.23891 * 20 18 16 23 23 H 1.48496 * 109.47579 * 145.24267 * 20 18 16 24 24 H 1.09001 * 109.46917 * 60.01051 * 1 2 3 25 25 H 1.09004 * 109.46615 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47541 * 299.99775 * 1 2 3 27 27 H 1.09001 * 109.47320 * 239.99581 * 2 1 3 28 28 H 1.09007 * 109.47130 * 119.99304 * 2 1 3 29 29 H 1.08992 * 109.47047 * 29.99685 * 4 3 2 30 30 H 1.08999 * 109.46914 * 150.00607 * 4 3 2 31 31 H 1.09003 * 109.47393 * 299.99881 * 5 4 3 32 32 H 1.09001 * 109.47168 * 59.99613 * 5 4 3 33 33 H 1.07994 * 119.95834 * 0.02562 * 11 10 8 34 34 H 1.08000 * 119.66844 * 179.72055 * 12 11 10 35 35 H 1.08002 * 119.71611 * 180.02562 * 13 12 11 36 36 H 1.08003 * 120.05852 * 180.02562 * 14 13 12 37 37 H 0.97000 * 119.99753 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1592 2.1083 -1.2641 5 6 3.5633 1.8824 -1.8285 6 6 3.7048 2.6124 -3.0988 7 7 3.8143 3.1767 -4.0787 8 6 2.3378 1.9831 1.1628 9 8 2.6409 3.1607 1.1748 10 6 2.3198 1.2137 2.4203 11 6 3.0643 0.0432 2.5379 12 6 3.0401 -0.6782 3.7167 13 6 2.2824 -0.2452 4.7965 14 6 1.5407 0.9107 4.7124 15 6 1.5473 1.6628 3.5233 16 6 0.7910 2.8476 3.4267 17 1 0.3272 3.1173 2.4894 18 6 0.6402 3.6769 4.5479 19 7 -0.1510 4.7147 4.4911 20 14 1.5712 3.2972 6.1223 21 1 0.7056 2.5018 7.0297 22 1 2.7948 2.5206 5.7988 23 1 1.9532 4.5673 6.7901 24 1 -0.3633 0.5137 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 1.8934 -0.5139 -0.8899 28 1 1.8934 -0.5138 0.8901 29 1 1.4186 1.7453 -1.9765 30 1 2.0047 3.1731 -1.0899 31 1 4.3041 2.2454 -1.1160 32 1 3.7179 0.8175 -2.0025 33 1 3.6584 -0.3040 1.7056 34 1 3.6167 -1.5877 3.7989 35 1 2.2751 -0.8207 5.7104 36 1 0.9546 1.2401 5.5577 37 1 -0.2555 5.2879 5.2667 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601009340.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:46 Heat of formation + Delta-G solvation = 11.331474 kcal Electronic energy + Delta-G solvation = -20697.915635 eV Core-core repulsion = 17633.130282 eV Total energy + Delta-G solvation = -3064.785353 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.64653 -37.49938 -36.67547 -35.46357 -33.69529 -32.39301 -30.63405 -30.18371 -29.26793 -25.61770 -24.30695 -23.29694 -21.77700 -21.01806 -18.61938 -17.68704 -17.49060 -16.83440 -15.86888 -15.48176 -14.92477 -14.64632 -14.31496 -13.95969 -13.89381 -13.48891 -13.16344 -12.86785 -12.65713 -12.58158 -12.46489 -12.19907 -12.00397 -11.83908 -11.70388 -11.48283 -11.00896 -10.98712 -10.90887 -10.82970 -10.33297 -10.00799 -9.78736 -9.34230 -8.90329 -8.33190 -7.76831 -7.72049 -6.98066 -4.59231 2.16027 2.52570 2.68172 2.76009 3.05419 3.16872 3.26912 3.37220 3.62697 3.92699 4.15810 4.44393 4.91304 5.04050 5.21070 5.26784 5.35315 5.46267 5.57121 5.72326 5.76305 5.84325 5.93880 5.96592 6.05241 6.17775 6.27405 6.43759 6.53561 6.71741 6.93483 7.03785 7.16326 7.35101 7.47892 7.52247 7.65230 7.90220 7.98051 8.26436 8.48112 8.66732 9.00961 10.03180 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.019379 B = 0.006129 C = 0.005368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.508543 B = 4567.494448 C = 5214.427034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.100 3.900 3 N -0.622 5.622 4 C 0.122 3.878 5 C -0.045 4.045 6 C 0.217 3.783 7 N -0.445 5.445 8 C 0.585 3.415 9 O -0.526 6.526 10 C -0.235 4.235 11 C -0.050 4.050 12 C -0.247 4.247 13 C -0.068 4.068 14 C -0.223 4.223 15 C 0.122 3.878 16 C -0.416 4.416 17 H 0.091 0.909 18 C 0.083 3.917 19 N -0.801 5.801 20 Si 0.909 3.091 21 H -0.270 1.270 22 H -0.235 1.235 23 H -0.290 1.290 24 H 0.050 0.950 25 H 0.060 0.940 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.098 0.902 29 H 0.079 0.921 30 H 0.092 0.908 31 H 0.113 0.887 32 H 0.108 0.892 33 H 0.100 0.900 34 H 0.098 0.902 35 H 0.096 0.904 36 H 0.101 0.899 37 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.817 -10.392 -4.621 11.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.022 4.022 3 N -0.357 5.357 4 C -0.003 4.003 5 C -0.087 4.087 6 C -0.101 4.101 7 N -0.122 5.122 8 C 0.377 3.623 9 O -0.401 6.401 10 C -0.239 4.239 11 C -0.069 4.069 12 C -0.266 4.266 13 C -0.086 4.086 14 C -0.242 4.242 15 C 0.117 3.883 16 C -0.444 4.444 17 H 0.109 0.891 18 C -0.137 4.137 19 N -0.425 5.425 20 Si 0.736 3.264 21 H -0.197 1.197 22 H -0.158 1.158 23 H -0.218 1.218 24 H 0.069 0.931 25 H 0.079 0.921 26 H 0.085 0.915 27 H 0.085 0.915 28 H 0.116 0.884 29 H 0.097 0.903 30 H 0.110 0.890 31 H 0.131 0.869 32 H 0.126 0.874 33 H 0.118 0.882 34 H 0.116 0.884 35 H 0.114 0.886 36 H 0.119 0.881 37 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 2.992 -8.627 -5.999 10.926 hybrid contribution 0.144 -0.302 1.113 1.162 sum 3.136 -8.929 -4.886 10.650 Atomic orbital electron populations 1.22162 0.96263 1.01677 1.02686 1.21719 0.94538 0.82596 1.03380 1.48002 1.67631 1.14589 1.05435 1.21121 0.93329 0.99807 0.86035 1.19779 1.01763 0.99639 0.87499 1.29085 0.93132 0.93492 0.94406 1.81210 1.08724 1.09818 1.12460 1.18487 0.74641 0.86361 0.82857 1.90733 1.47237 1.15845 1.86266 1.19367 1.08610 1.00352 0.95607 1.20643 0.96798 0.92854 0.96559 1.20282 1.08512 1.02733 0.95100 1.20703 0.95313 0.95652 0.96956 1.20981 1.06334 0.97728 0.99164 1.17455 0.88897 0.92159 0.89759 1.19480 1.24159 1.02406 0.98377 0.89100 1.26208 0.93171 0.93980 1.00363 1.69529 1.28486 1.12281 1.32159 0.86361 0.82520 0.77656 0.79864 1.19669 1.15824 1.21772 0.93109 0.92098 0.91501 0.91529 0.88375 0.90254 0.89003 0.86932 0.87387 0.88203 0.88411 0.88562 0.88150 0.90195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.14 10.24 37.16 0.38 -1.76 16 2 C 0.10 1.24 5.95 -4.04 -0.02 1.21 16 3 N -0.62 -9.40 2.47 -174.95 -0.43 -9.83 16 4 C 0.12 1.54 5.43 -4.04 -0.02 1.52 16 5 C -0.05 -0.46 6.03 -29.52 -0.18 -0.63 16 6 C 0.22 2.65 15.43 -20.76 -0.32 2.33 16 7 N -0.44 -6.64 18.54 42.16 0.78 -5.86 16 8 C 0.58 11.94 6.33 -12.52 -0.08 11.86 16 9 O -0.53 -12.79 15.89 5.27 0.08 -12.71 16 10 C -0.23 -4.99 4.94 -104.37 -0.52 -5.51 16 11 C -0.05 -0.90 7.47 -39.22 -0.29 -1.19 16 12 C -0.25 -4.42 10.03 -39.37 -0.39 -4.82 16 13 C -0.07 -1.31 10.01 -39.60 -0.40 -1.71 16 14 C -0.22 -4.95 6.71 -38.88 -0.26 -5.21 16 15 C 0.12 2.91 5.13 -106.54 -0.55 2.36 16 16 C -0.42 -11.05 8.44 -37.81 -0.32 -11.37 16 17 H 0.09 2.62 7.63 -52.49 -0.40 2.22 16 18 C 0.08 2.15 5.51 -17.30 -0.10 2.05 16 19 N -0.80 -21.34 13.92 55.56 0.77 -20.57 16 20 Si 0.91 20.32 24.43 -169.99 -4.15 16.17 16 21 H -0.27 -5.72 6.91 56.52 0.39 -5.33 16 22 H -0.24 -5.35 6.20 56.52 0.35 -5.00 16 23 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 24 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 27 H 0.07 0.59 8.11 -51.93 -0.42 0.17 16 28 H 0.10 1.31 4.45 -51.92 -0.23 1.08 16 29 H 0.08 0.81 8.07 -51.93 -0.42 0.39 16 30 H 0.09 1.39 7.35 -51.93 -0.38 1.01 16 31 H 0.11 1.22 8.14 -51.93 -0.42 0.80 16 32 H 0.11 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.10 1.49 7.59 -52.49 -0.40 1.09 16 34 H 0.10 1.48 8.06 -52.49 -0.42 1.06 16 35 H 0.10 1.60 8.06 -52.49 -0.42 1.17 16 36 H 0.10 2.22 4.54 -52.48 -0.24 1.98 16 37 H 0.29 6.92 8.29 -40.82 -0.34 6.59 16 LS Contribution 315.97 15.07 4.76 4.76 Total: -1.00 -30.35 315.97 -5.90 -36.25 By element: Atomic # 1 Polarization: 7.29 SS G_CDS: -4.65 Total: 2.64 kcal Atomic # 6 Polarization: -7.80 SS G_CDS: -3.07 Total: -10.86 kcal Atomic # 7 Polarization: -37.38 SS G_CDS: 1.12 Total: -36.26 kcal Atomic # 8 Polarization: -12.79 SS G_CDS: 0.08 Total: -12.71 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -4.15 Total: 16.17 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -30.35 -5.90 -36.25 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601009340.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.578 kcal (2) G-P(sol) polarization free energy of solvation -30.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.247 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds