Wall clock time and date at job start Mon Mar 30 2020 01:42:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46497 * 109.46845 * 2 1 4 4 C 1.46507 * 119.99882 * 274.94660 * 3 2 1 5 5 C 1.53001 * 109.46945 * 270.00059 * 4 3 2 6 6 C 1.47195 * 109.46971 * 179.97438 * 5 4 3 7 7 N 5.65201 * 113.83867 * 307.91329 * 2 1 3 8 8 C 1.34777 * 120.00403 * 94.94924 * 3 2 1 9 9 O 1.21609 * 120.00177 * 185.85434 * 8 3 2 10 10 C 1.47434 * 119.99743 * 5.84559 * 8 3 2 11 11 C 1.39224 * 120.28069 * 55.09908 * 10 8 3 12 12 C 1.38222 * 120.09220 * 180.27786 * 11 10 8 13 13 C 1.38825 * 120.67433 * 359.69682 * 12 11 10 14 14 C 1.37602 * 120.57192 * 0.02562 * 13 12 11 15 15 C 1.40701 * 119.87842 * 0.02562 * 14 13 12 16 16 C 1.40891 * 120.32766 * 179.97438 * 15 14 13 17 17 H 1.07997 * 120.00477 * 214.97785 * 16 15 14 18 18 C 1.40277 * 120.00001 * 34.97652 * 16 15 14 19 19 N 1.30628 * 120.00175 * 185.74570 * 18 16 15 20 20 Si 1.86798 * 119.99813 * 5.75179 * 18 16 15 21 21 H 1.48505 * 109.47195 * 265.24239 * 20 18 16 22 22 H 1.48498 * 109.47453 * 25.23891 * 20 18 16 23 23 H 1.48496 * 109.47579 * 145.24267 * 20 18 16 24 24 H 1.09001 * 109.46917 * 60.01051 * 1 2 3 25 25 H 1.09004 * 109.46615 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47541 * 299.99775 * 1 2 3 27 27 H 1.09001 * 109.47320 * 239.99581 * 2 1 3 28 28 H 1.09007 * 109.47130 * 119.99304 * 2 1 3 29 29 H 1.08992 * 109.47047 * 29.99685 * 4 3 2 30 30 H 1.08999 * 109.46914 * 150.00607 * 4 3 2 31 31 H 1.09003 * 109.47393 * 299.99881 * 5 4 3 32 32 H 1.09001 * 109.47168 * 59.99613 * 5 4 3 33 33 H 1.07994 * 119.95834 * 0.02562 * 11 10 8 34 34 H 1.08000 * 119.66844 * 179.72055 * 12 11 10 35 35 H 1.08002 * 119.71611 * 180.02562 * 13 12 11 36 36 H 1.08003 * 120.05852 * 180.02562 * 14 13 12 37 37 H 0.97000 * 119.99753 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1592 2.1083 -1.2641 5 6 3.5633 1.8824 -1.8285 6 6 3.7048 2.6124 -3.0988 7 7 3.8143 3.1767 -4.0787 8 6 2.3378 1.9831 1.1628 9 8 2.6409 3.1607 1.1748 10 6 2.3198 1.2137 2.4203 11 6 3.0643 0.0432 2.5379 12 6 3.0401 -0.6782 3.7167 13 6 2.2824 -0.2452 4.7965 14 6 1.5407 0.9107 4.7124 15 6 1.5473 1.6628 3.5233 16 6 0.7910 2.8476 3.4267 17 1 0.3272 3.1173 2.4894 18 6 0.6402 3.6769 4.5479 19 7 -0.1510 4.7147 4.4911 20 14 1.5712 3.2972 6.1223 21 1 0.7056 2.5018 7.0297 22 1 2.7948 2.5206 5.7988 23 1 1.9532 4.5673 6.7901 24 1 -0.3633 0.5137 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 1.8934 -0.5139 -0.8899 28 1 1.8934 -0.5138 0.8901 29 1 1.4186 1.7453 -1.9765 30 1 2.0047 3.1731 -1.0899 31 1 4.3041 2.2454 -1.1160 32 1 3.7179 0.8175 -2.0025 33 1 3.6584 -0.3040 1.7056 34 1 3.6167 -1.5877 3.7989 35 1 2.2751 -0.8207 5.7104 36 1 0.9546 1.2401 5.5577 37 1 -0.2555 5.2879 5.2667 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601009340.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:46 Heat of formation + Delta-G solvation = -7.900033 kcal Electronic energy + Delta-G solvation = -20698.749575 eV Core-core repulsion = 17633.130282 eV Total energy + Delta-G solvation = -3065.619294 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.12109 -39.00483 -37.86481 -36.83596 -35.48831 -33.46916 -32.35295 -31.66445 -30.45232 -27.29118 -25.59110 -24.54205 -23.27449 -22.57068 -20.05667 -19.27010 -18.67531 -18.23653 -17.36079 -16.95893 -16.19608 -15.99083 -15.76475 -15.46488 -15.22698 -14.64659 -14.60240 -14.43533 -14.06210 -13.90187 -13.65112 -13.61530 -13.37464 -13.31779 -12.76283 -12.73570 -12.65929 -12.58036 -12.14370 -11.86728 -11.85591 -11.67607 -11.52957 -11.06993 -10.51334 -9.67238 -9.40824 -9.30054 -8.84207 -6.50202 0.55408 0.87996 1.25458 1.39178 1.48161 1.65518 1.78568 1.97337 2.11422 2.28310 2.68465 3.17371 3.49025 3.87346 4.07326 4.23641 4.29154 4.33491 4.46367 4.49150 4.55780 4.73576 4.78194 4.82305 4.92373 4.96706 5.03068 5.06327 5.14608 5.31965 5.46481 5.50294 5.75719 5.78497 5.88286 5.98687 6.21005 6.39682 6.55326 6.55896 6.74988 6.79872 7.49309 8.24558 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.019379 B = 0.006129 C = 0.005368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.508543 B = 4567.494448 C = 5214.427034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.096 3.904 3 N -0.609 5.609 4 C 0.118 3.882 5 C -0.030 4.030 6 C 0.243 3.757 7 N -0.494 5.494 8 C 0.578 3.422 9 O -0.581 6.581 10 C -0.240 4.240 11 C -0.046 4.046 12 C -0.217 4.217 13 C -0.070 4.070 14 C -0.241 4.241 15 C 0.100 3.900 16 C -0.457 4.457 17 H 0.039 0.961 18 C 0.036 3.964 19 N -0.861 5.861 20 Si 0.967 3.033 21 H -0.250 1.250 22 H -0.239 1.239 23 H -0.289 1.289 24 H 0.058 0.942 25 H 0.088 0.912 26 H 0.018 0.982 27 H 0.122 0.878 28 H 0.093 0.907 29 H 0.111 0.889 30 H 0.054 0.946 31 H 0.108 0.892 32 H 0.156 0.844 33 H 0.145 0.855 34 H 0.146 0.854 35 H 0.133 0.867 36 H 0.095 0.905 37 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.226 -15.379 -4.953 16.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.025 4.025 3 N -0.341 5.341 4 C -0.006 4.006 5 C -0.071 4.071 6 C -0.075 4.075 7 N -0.172 5.172 8 C 0.369 3.631 9 O -0.461 6.461 10 C -0.245 4.245 11 C -0.064 4.064 12 C -0.235 4.235 13 C -0.088 4.088 14 C -0.260 4.260 15 C 0.096 3.904 16 C -0.487 4.487 17 H 0.057 0.943 18 C -0.177 4.177 19 N -0.489 5.489 20 Si 0.791 3.209 21 H -0.175 1.175 22 H -0.162 1.162 23 H -0.217 1.217 24 H 0.077 0.923 25 H 0.107 0.893 26 H 0.037 0.963 27 H 0.140 0.860 28 H 0.111 0.889 29 H 0.129 0.871 30 H 0.073 0.927 31 H 0.126 0.874 32 H 0.173 0.827 33 H 0.163 0.837 34 H 0.163 0.837 35 H 0.151 0.849 36 H 0.113 0.887 37 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 5.386 -13.679 -6.366 16.020 hybrid contribution -0.495 0.908 1.043 1.469 sum 4.891 -12.771 -5.323 14.675 Atomic orbital electron populations 1.22151 0.96891 1.02852 1.00732 1.22044 0.93998 0.80736 1.05762 1.47926 1.65765 1.15771 1.04676 1.21253 0.96165 0.97771 0.85444 1.19772 0.99431 1.02010 0.85890 1.29353 0.91702 0.92311 0.94090 1.81245 1.10228 1.11400 1.14349 1.18588 0.74496 0.85706 0.84315 1.90708 1.50091 1.18039 1.87218 1.19735 1.08064 1.01343 0.95326 1.21113 0.95743 0.91197 0.98376 1.20943 1.05890 1.03120 0.93590 1.21183 0.94138 0.94413 0.99093 1.21093 1.07510 0.99007 0.98379 1.17658 0.89285 0.91574 0.91846 1.19284 1.27539 1.05046 0.96802 0.94264 1.26970 0.93896 0.93672 1.03143 1.69602 1.31664 1.14285 1.33336 0.85504 0.81213 0.77515 0.76714 1.17502 1.16220 1.21691 0.92326 0.89318 0.96280 0.85984 0.88858 0.87124 0.92725 0.87418 0.82657 0.83743 0.83671 0.84923 0.88712 0.89904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.90 10.24 71.98 0.74 -3.16 16 2 C 0.10 1.96 5.95 86.38 0.51 2.47 16 3 N -0.61 -17.36 2.47 -825.67 -2.04 -19.40 16 4 C 0.12 2.78 5.43 86.38 0.47 3.25 16 5 C -0.03 -0.51 6.03 28.79 0.17 -0.33 16 6 C 0.24 5.46 15.43 89.44 1.38 6.84 16 7 N -0.49 -14.30 18.54 20.01 0.37 -13.93 16 8 C 0.58 23.86 6.33 86.67 0.55 24.41 16 9 O -0.58 -29.94 15.89 -4.06 -0.06 -30.00 16 10 C -0.24 -10.02 4.94 -19.70 -0.10 -10.12 16 11 C -0.05 -1.44 7.47 22.50 0.17 -1.27 16 12 C -0.22 -6.38 10.03 22.41 0.22 -6.15 16 13 C -0.07 -2.39 10.01 22.26 0.22 -2.17 16 14 C -0.24 -10.42 6.71 22.72 0.15 -10.27 16 15 C 0.10 4.89 5.13 -21.11 -0.11 4.78 16 16 C -0.46 -26.33 8.44 23.42 0.20 -26.13 16 17 H 0.04 2.55 7.63 -2.91 -0.02 2.53 16 18 C 0.04 2.00 5.51 85.37 0.47 2.47 16 19 N -0.86 -50.20 13.92 21.88 0.30 -49.90 16 20 Si 0.97 43.58 24.43 68.60 1.68 45.26 16 21 H -0.25 -10.23 6.91 99.48 0.69 -9.55 16 22 H -0.24 -10.67 6.20 99.48 0.62 -10.05 16 23 H -0.29 -12.72 7.11 99.48 0.71 -12.01 16 24 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 25 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 26 H 0.02 0.60 8.14 -2.39 -0.02 0.58 16 27 H 0.12 1.28 8.11 -2.39 -0.02 1.26 16 28 H 0.09 2.03 4.45 -2.38 -0.01 2.02 16 29 H 0.11 1.93 8.07 -2.39 -0.02 1.91 16 30 H 0.05 1.72 7.35 -2.39 -0.02 1.71 16 31 H 0.11 2.07 8.14 -2.39 -0.02 2.05 16 32 H 0.16 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.14 3.28 7.59 -2.91 -0.02 3.26 16 34 H 0.15 3.08 8.06 -2.91 -0.02 3.06 16 35 H 0.13 3.60 8.06 -2.91 -0.02 3.57 16 36 H 0.10 4.15 4.54 -2.91 -0.01 4.14 16 37 H 0.29 15.29 8.29 -92.71 -0.77 14.52 16 Total: -1.00 -76.63 315.97 6.27 -70.35 By element: Atomic # 1 Polarization: 12.03 SS G_CDS: 0.97 Total: 13.01 kcal Atomic # 6 Polarization: -20.44 SS G_CDS: 5.05 Total: -15.39 kcal Atomic # 7 Polarization: -81.86 SS G_CDS: -1.37 Total: -83.23 kcal Atomic # 8 Polarization: -29.94 SS G_CDS: -0.06 Total: -30.00 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 1.68 Total: 45.26 kcal Total: -76.63 6.27 -70.35 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601009340.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.455 kcal (2) G-P(sol) polarization free energy of solvation -76.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds