Wall clock time and date at job start Mon Mar 30 2020 01:37:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.47003 * 2 1 4 4 C 1.47199 * 109.46684 * 119.99756 * 2 1 3 5 5 N 2.60799 * 109.46787 * 119.99685 * 2 1 3 6 6 C 1.52991 * 109.47322 * 239.99503 * 2 1 3 7 7 N 1.46505 * 109.46907 * 65.00291 * 6 2 1 8 8 C 1.46502 * 120.00018 * 269.99689 * 7 6 2 9 9 C 1.34777 * 119.99866 * 90.00005 * 7 6 2 10 10 O 1.21606 * 120.00321 * 4.70891 * 9 7 6 11 11 C 1.47433 * 119.99725 * 184.70409 * 9 7 6 12 12 C 1.39223 * 120.28621 * 309.92480 * 11 9 7 13 13 C 1.38221 * 120.09171 * 180.28269 * 12 11 9 14 14 C 1.38825 * 120.67708 * 359.71172 * 13 12 11 15 15 C 1.37598 * 120.57193 * 0.02562 * 14 13 12 16 16 C 1.40709 * 119.88073 * 359.97438 * 15 14 13 17 17 C 1.40882 * 120.33066 * 180.02562 * 16 15 14 18 18 H 1.08000 * 120.00105 * 214.22888 * 17 16 15 19 19 C 1.40272 * 120.00100 * 34.22551 * 17 16 15 20 20 N 1.30634 * 120.00386 * 194.32346 * 19 17 16 21 21 Si 1.86803 * 119.99931 * 14.32399 * 19 17 16 22 22 H 1.48502 * 109.46996 * 268.01211 * 21 19 17 23 23 H 1.48497 * 109.47074 * 28.00877 * 21 19 17 24 24 H 1.48500 * 109.47214 * 148.00821 * 21 19 17 25 25 H 1.09000 * 109.47050 * 60.00189 * 1 2 3 26 26 H 1.08996 * 109.47003 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47510 * 300.00129 * 1 2 3 28 28 H 1.08997 * 109.47467 * 305.00399 * 6 2 1 29 29 H 1.08999 * 109.47334 * 185.00162 * 6 2 1 30 30 H 1.09000 * 109.47183 * 270.98462 * 8 7 6 31 31 H 1.08998 * 109.46898 * 30.98607 * 8 7 6 32 32 H 1.09001 * 109.47032 * 150.98503 * 8 7 6 33 33 H 1.07997 * 119.95462 * 0.02562 * 12 11 9 34 34 H 1.08001 * 119.66517 * 179.73941 * 13 12 11 35 35 H 1.08003 * 119.71549 * 180.02562 * 14 13 12 36 36 H 1.07999 * 120.06140 * 180.02562 * 15 14 13 37 37 H 0.97000 * 120.00234 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0206 -0.6939 1.2019 5 7 2.3992 -1.2293 2.1295 6 6 2.0401 -0.7213 -1.2491 7 7 1.6525 0.0353 -2.4423 8 6 0.3747 -0.2424 -3.1028 9 6 2.4717 0.9868 -2.9324 10 8 3.5687 1.1590 -2.4368 11 6 2.0377 1.8188 -4.0695 12 6 1.5196 1.2245 -5.2170 13 6 1.1194 2.0081 -6.2829 14 6 1.2219 3.3913 -6.2231 15 6 1.7248 4.0078 -5.1005 16 6 2.1394 3.2331 -4.0015 17 6 2.6552 3.8545 -2.8471 18 1 3.4362 3.3726 -2.2777 19 6 2.1546 5.0991 -2.4374 20 7 2.8041 5.8046 -1.5502 21 14 0.5590 5.7479 -3.1604 22 1 0.8589 6.5862 -4.3489 23 1 -0.3017 4.6070 -3.5637 24 1 -0.1487 6.5664 -2.1432 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.6054 -1.7198 -1.2950 29 1 3.1264 -0.7995 -1.2054 30 1 0.5137 -1.0252 -3.8485 31 1 -0.3533 -0.5720 -2.3615 32 1 0.0130 0.6632 -3.5897 33 1 1.4342 0.1495 -5.2759 34 1 0.7224 1.5396 -7.1714 35 1 0.9041 3.9886 -7.0649 36 1 1.8006 5.0845 -5.0626 37 1 2.4577 6.6651 -1.2667 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601011368.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:50 Heat of formation + Delta-G solvation = 10.974925 kcal Electronic energy + Delta-G solvation = -20835.506160 eV Core-core repulsion = 17770.705346 eV Total energy + Delta-G solvation = -3064.800814 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.66411 -37.67155 -36.77549 -35.31576 -33.77211 -32.88114 -30.60589 -30.09607 -27.69334 -25.93368 -25.01643 -23.52426 -21.90904 -20.99820 -18.71975 -17.55355 -17.49813 -16.65053 -15.79917 -15.52354 -14.97361 -14.74107 -14.24080 -13.97051 -13.75557 -13.35773 -12.96583 -12.81838 -12.73312 -12.65829 -12.45667 -12.13527 -12.09995 -11.96878 -11.66654 -11.41678 -11.19699 -10.94976 -10.89167 -10.79982 -10.48646 -10.12996 -9.89754 -9.29401 -8.83354 -8.26719 -7.84325 -7.72766 -7.03125 -4.62202 2.15356 2.53575 2.76142 2.86021 3.02090 3.09990 3.19768 3.39826 3.70265 3.86989 4.15085 4.39757 4.83698 4.95589 5.21631 5.25531 5.37733 5.44773 5.60198 5.66109 5.76110 5.87120 5.91028 5.98403 6.04138 6.06882 6.16740 6.29296 6.48937 6.72154 6.90215 7.02856 7.17269 7.37262 7.51256 7.61722 7.69369 7.92446 7.97699 8.33999 8.52745 8.71529 9.01879 9.96652 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.016495 B = 0.007241 C = 0.005853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1697.089940 B = 3865.951702 C = 4782.870802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.019 4.019 3 H 0.124 0.876 4 C 0.223 3.777 5 N -0.446 5.446 6 C 0.130 3.870 7 N -0.622 5.622 8 C 0.074 3.926 9 C 0.585 3.415 10 O -0.535 6.535 11 C -0.244 4.244 12 C -0.045 4.045 13 C -0.252 4.252 14 C -0.065 4.065 15 C -0.230 4.230 16 C 0.126 3.874 17 C -0.434 4.434 18 H 0.113 0.887 19 C 0.083 3.917 20 N -0.793 5.793 21 Si 0.908 3.092 22 H -0.267 1.267 23 H -0.243 1.243 24 H -0.289 1.289 25 H 0.084 0.916 26 H 0.061 0.939 27 H 0.062 0.938 28 H 0.079 0.921 29 H 0.090 0.910 30 H 0.049 0.951 31 H 0.066 0.934 32 H 0.086 0.914 33 H 0.100 0.900 34 H 0.097 0.903 35 H 0.096 0.904 36 H 0.105 0.895 37 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.876 -7.513 -2.875 11.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.042 4.042 3 H 0.142 0.858 4 C -0.095 4.095 5 N -0.122 5.122 6 C 0.005 3.995 7 N -0.357 5.357 8 C -0.069 4.069 9 C 0.378 3.622 10 O -0.411 6.411 11 C -0.248 4.248 12 C -0.064 4.064 13 C -0.271 4.271 14 C -0.083 4.083 15 C -0.249 4.249 16 C 0.122 3.878 17 C -0.461 4.461 18 H 0.131 0.869 19 C -0.138 4.138 20 N -0.416 5.416 21 Si 0.734 3.266 22 H -0.193 1.193 23 H -0.166 1.166 24 H -0.216 1.216 25 H 0.102 0.898 26 H 0.080 0.920 27 H 0.082 0.918 28 H 0.098 0.902 29 H 0.108 0.892 30 H 0.067 0.933 31 H 0.084 0.916 32 H 0.105 0.895 33 H 0.118 0.882 34 H 0.115 0.885 35 H 0.114 0.886 36 H 0.123 0.877 37 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -7.620 -8.006 -1.003 11.098 hybrid contribution -0.819 0.745 -0.610 1.263 sum -8.439 -7.262 -1.612 11.249 Atomic orbital electron populations 1.21922 0.92013 1.02604 1.03865 1.19433 0.97384 1.00765 0.86601 0.85815 1.29110 0.92882 0.93203 0.94326 1.81173 1.09260 1.10187 1.11568 1.21167 1.01938 0.93717 0.82705 1.47737 1.20804 1.38944 1.28214 1.22035 0.85027 1.02383 0.97421 1.18459 0.83380 0.77651 0.82713 1.90701 1.21228 1.67785 1.61419 1.19344 1.15715 0.93951 0.95794 1.20790 0.95056 0.97558 0.92969 1.20295 1.13753 0.93538 0.99507 1.20748 0.96480 0.94557 0.96549 1.21122 1.10433 0.98590 0.94800 1.17446 0.87994 0.89857 0.92498 1.19907 1.17706 1.00698 1.07810 0.86918 1.26324 0.98754 0.95100 0.93629 1.69598 1.36518 1.10949 1.24511 0.86373 0.81907 0.80024 0.78315 1.19316 1.16641 1.21590 0.89755 0.92043 0.91850 0.90237 0.89170 0.93274 0.91562 0.89509 0.88187 0.88481 0.88599 0.87693 0.90175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 8.14 37.16 0.30 -1.18 16 2 C -0.02 -0.24 2.97 -93.41 -0.28 -0.52 16 3 H 0.12 1.88 8.14 -51.93 -0.42 1.46 16 4 C 0.22 3.15 14.64 -20.76 -0.30 2.85 16 5 N -0.45 -7.26 18.54 42.15 0.78 -6.48 16 6 C 0.13 1.70 4.89 -4.04 -0.02 1.68 16 7 N -0.62 -9.54 2.70 -182.85 -0.49 -10.03 16 8 C 0.07 0.88 8.21 59.85 0.49 1.37 16 9 C 0.59 12.07 6.72 -12.52 -0.08 11.98 16 10 O -0.54 -13.00 14.79 5.27 0.08 -12.92 16 11 C -0.24 -5.24 4.91 -104.36 -0.51 -5.76 16 12 C -0.04 -0.83 7.66 -39.22 -0.30 -1.13 16 13 C -0.25 -4.59 10.03 -39.37 -0.39 -4.98 16 14 C -0.06 -1.27 10.01 -39.60 -0.40 -1.66 16 15 C -0.23 -5.15 7.16 -38.88 -0.28 -5.43 16 16 C 0.13 3.03 5.05 -106.54 -0.54 2.50 16 17 C -0.43 -11.41 8.84 -37.82 -0.33 -11.74 16 18 H 0.11 3.31 6.36 -52.49 -0.33 2.98 16 19 C 0.08 2.08 5.44 -17.30 -0.09 1.98 16 20 N -0.79 -20.47 13.92 55.56 0.77 -19.70 16 21 Si 0.91 19.34 24.56 -169.99 -4.17 15.17 16 22 H -0.27 -5.54 6.65 56.52 0.38 -5.16 16 23 H -0.24 -5.16 6.93 56.52 0.39 -4.77 16 24 H -0.29 -5.95 7.11 56.52 0.40 -5.55 16 25 H 0.08 0.88 5.87 -51.93 -0.31 0.57 16 26 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.08 0.79 8.07 -51.93 -0.42 0.37 16 29 H 0.09 1.35 7.36 -51.93 -0.38 0.97 16 30 H 0.05 0.51 7.49 -51.93 -0.39 0.12 16 31 H 0.07 0.59 5.93 -51.93 -0.31 0.29 16 32 H 0.09 1.18 5.85 -51.93 -0.30 0.88 16 33 H 0.10 1.55 6.59 -52.49 -0.35 1.20 16 34 H 0.10 1.51 8.06 -52.49 -0.42 1.08 16 35 H 0.10 1.61 8.06 -52.48 -0.42 1.19 16 36 H 0.11 2.35 4.96 -52.49 -0.26 2.09 16 37 H 0.29 6.68 8.29 -40.82 -0.34 6.34 16 LS Contribution 307.19 15.07 4.63 4.63 Total: -1.00 -29.56 307.19 -5.48 -35.04 By element: Atomic # 1 Polarization: 8.66 SS G_CDS: -4.33 Total: 4.33 kcal Atomic # 6 Polarization: -7.30 SS G_CDS: -2.74 Total: -10.04 kcal Atomic # 7 Polarization: -37.27 SS G_CDS: 1.06 Total: -36.21 kcal Atomic # 8 Polarization: -13.00 SS G_CDS: 0.08 Total: -12.92 kcal Atomic # 14 Polarization: 19.34 SS G_CDS: -4.17 Total: 15.17 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -29.56 -5.48 -35.04 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601011368.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.014 kcal (2) G-P(sol) polarization free energy of solvation -29.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.039 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds