Wall clock time and date at job start Mon Mar 30 2020 01:37:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.47003 * 2 1 4 4 C 1.47199 * 109.46684 * 119.99756 * 2 1 3 5 5 N 2.60799 * 109.46787 * 119.99685 * 2 1 3 6 6 C 1.52991 * 109.47322 * 239.99503 * 2 1 3 7 7 N 1.46505 * 109.46907 * 65.00291 * 6 2 1 8 8 C 1.46502 * 120.00018 * 269.99689 * 7 6 2 9 9 C 1.34777 * 119.99866 * 90.00005 * 7 6 2 10 10 O 1.21606 * 120.00321 * 4.70891 * 9 7 6 11 11 C 1.47433 * 119.99725 * 184.70409 * 9 7 6 12 12 C 1.39223 * 120.28621 * 309.92480 * 11 9 7 13 13 C 1.38221 * 120.09171 * 180.28269 * 12 11 9 14 14 C 1.38825 * 120.67708 * 359.71172 * 13 12 11 15 15 C 1.37598 * 120.57193 * 0.02562 * 14 13 12 16 16 C 1.40709 * 119.88073 * 359.97438 * 15 14 13 17 17 C 1.40882 * 120.33066 * 180.02562 * 16 15 14 18 18 H 1.08000 * 120.00105 * 214.22888 * 17 16 15 19 19 C 1.40272 * 120.00100 * 34.22551 * 17 16 15 20 20 N 1.30634 * 120.00386 * 194.32346 * 19 17 16 21 21 Si 1.86803 * 119.99931 * 14.32399 * 19 17 16 22 22 H 1.48502 * 109.46996 * 268.01211 * 21 19 17 23 23 H 1.48497 * 109.47074 * 28.00877 * 21 19 17 24 24 H 1.48500 * 109.47214 * 148.00821 * 21 19 17 25 25 H 1.09000 * 109.47050 * 60.00189 * 1 2 3 26 26 H 1.08996 * 109.47003 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47510 * 300.00129 * 1 2 3 28 28 H 1.08997 * 109.47467 * 305.00399 * 6 2 1 29 29 H 1.08999 * 109.47334 * 185.00162 * 6 2 1 30 30 H 1.09000 * 109.47183 * 270.98462 * 8 7 6 31 31 H 1.08998 * 109.46898 * 30.98607 * 8 7 6 32 32 H 1.09001 * 109.47032 * 150.98503 * 8 7 6 33 33 H 1.07997 * 119.95462 * 0.02562 * 12 11 9 34 34 H 1.08001 * 119.66517 * 179.73941 * 13 12 11 35 35 H 1.08003 * 119.71549 * 180.02562 * 14 13 12 36 36 H 1.07999 * 120.06140 * 180.02562 * 15 14 13 37 37 H 0.97000 * 120.00234 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0206 -0.6939 1.2019 5 7 2.3992 -1.2293 2.1295 6 6 2.0401 -0.7213 -1.2491 7 7 1.6525 0.0353 -2.4423 8 6 0.3747 -0.2424 -3.1028 9 6 2.4717 0.9868 -2.9324 10 8 3.5687 1.1590 -2.4368 11 6 2.0377 1.8188 -4.0695 12 6 1.5196 1.2245 -5.2170 13 6 1.1194 2.0081 -6.2829 14 6 1.2219 3.3913 -6.2231 15 6 1.7248 4.0078 -5.1005 16 6 2.1394 3.2331 -4.0015 17 6 2.6552 3.8545 -2.8471 18 1 3.4362 3.3726 -2.2777 19 6 2.1546 5.0991 -2.4374 20 7 2.8041 5.8046 -1.5502 21 14 0.5590 5.7479 -3.1604 22 1 0.8589 6.5862 -4.3489 23 1 -0.3017 4.6070 -3.5637 24 1 -0.1487 6.5664 -2.1432 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.6054 -1.7198 -1.2950 29 1 3.1264 -0.7995 -1.2054 30 1 0.5137 -1.0252 -3.8485 31 1 -0.3533 -0.5720 -2.3615 32 1 0.0130 0.6632 -3.5897 33 1 1.4342 0.1495 -5.2759 34 1 0.7224 1.5396 -7.1714 35 1 0.9041 3.9886 -7.0649 36 1 1.8006 5.0845 -5.0626 37 1 2.4577 6.6651 -1.2667 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601011368.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:49 Heat of formation + Delta-G solvation = -7.616858 kcal Electronic energy + Delta-G solvation = -20836.312361 eV Core-core repulsion = 17770.705346 eV Total energy + Delta-G solvation = -3065.607014 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.13196 -39.11687 -38.19006 -36.69430 -35.51863 -34.10821 -32.31558 -31.60478 -28.71552 -27.47208 -26.40032 -24.72908 -23.44614 -22.57758 -20.19167 -19.26658 -18.67767 -18.08688 -17.33526 -16.96391 -16.32170 -16.09829 -15.74226 -15.40890 -15.16016 -14.80232 -14.36651 -14.26099 -14.01327 -13.84494 -13.80518 -13.63191 -13.32442 -13.20159 -13.10870 -12.67315 -12.59853 -12.24432 -12.22200 -12.08901 -11.89590 -11.88740 -11.57922 -11.01220 -10.47109 -9.56118 -9.42116 -9.41192 -8.84326 -6.50494 0.53466 0.89068 1.29272 1.41445 1.51522 1.55753 1.67852 2.02545 2.14141 2.27889 2.66304 2.98758 3.51510 3.80073 3.90438 4.14389 4.24059 4.31773 4.47174 4.50614 4.63197 4.70737 4.79197 4.87287 4.89923 4.95029 5.06402 5.07013 5.10271 5.33285 5.34002 5.51201 5.74093 5.78895 5.91007 6.03255 6.27372 6.44015 6.44464 6.55041 6.79787 6.83698 7.49140 8.22788 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.016495 B = 0.007241 C = 0.005853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1697.089940 B = 3865.951702 C = 4782.870802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.013 4.013 3 H 0.090 0.910 4 C 0.244 3.756 5 N -0.481 5.481 6 C 0.129 3.871 7 N -0.610 5.610 8 C 0.065 3.935 9 C 0.576 3.424 10 O -0.589 6.589 11 C -0.251 4.251 12 C -0.041 4.041 13 C -0.225 4.225 14 C -0.065 4.065 15 C -0.250 4.250 16 C 0.107 3.893 17 C -0.477 4.477 18 H 0.059 0.941 19 C 0.043 3.957 20 N -0.851 5.851 21 Si 0.968 3.032 22 H -0.257 1.257 23 H -0.239 1.239 24 H -0.280 1.280 25 H 0.085 0.915 26 H 0.092 0.908 27 H 0.065 0.935 28 H 0.127 0.873 29 H 0.064 0.936 30 H 0.078 0.922 31 H 0.103 0.897 32 H 0.071 0.929 33 H 0.139 0.861 34 H 0.143 0.857 35 H 0.132 0.868 36 H 0.098 0.902 37 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.500 -9.961 -5.906 17.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.036 4.036 3 H 0.108 0.892 4 C -0.073 4.073 5 N -0.157 5.157 6 C 0.004 3.996 7 N -0.342 5.342 8 C -0.076 4.076 9 C 0.369 3.631 10 O -0.470 6.470 11 C -0.256 4.256 12 C -0.059 4.059 13 C -0.244 4.244 14 C -0.083 4.083 15 C -0.269 4.269 16 C 0.103 3.897 17 C -0.506 4.506 18 H 0.077 0.923 19 C -0.172 4.172 20 N -0.477 5.477 21 Si 0.790 3.210 22 H -0.182 1.182 23 H -0.162 1.162 24 H -0.207 1.207 25 H 0.104 0.896 26 H 0.111 0.889 27 H 0.084 0.916 28 H 0.145 0.855 29 H 0.082 0.918 30 H 0.096 0.904 31 H 0.121 0.879 32 H 0.090 0.910 33 H 0.157 0.843 34 H 0.160 0.840 35 H 0.150 0.850 36 H 0.116 0.884 37 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -11.287 -10.495 -4.048 15.935 hybrid contribution 0.287 1.238 0.129 1.277 sum -11.001 -9.257 -3.919 14.902 Atomic orbital electron populations 1.21948 0.89135 1.04708 1.04099 1.19396 0.99564 0.98596 0.86008 0.89215 1.29233 0.91803 0.92325 0.93968 1.81193 1.10448 1.11457 1.12628 1.21344 1.00988 0.95440 0.81792 1.47681 1.21145 1.37156 1.28238 1.22357 0.83633 1.02574 0.99068 1.18581 0.83313 0.78528 0.82710 1.90680 1.23891 1.69542 1.62854 1.19719 1.15047 0.93342 0.97480 1.21203 0.93519 0.99710 0.91501 1.20913 1.10247 0.93001 1.00261 1.21201 0.95054 0.95815 0.96271 1.21206 1.11715 0.98488 0.95492 1.17646 0.88418 0.91433 0.92186 1.19662 1.19080 1.02251 1.09584 0.92322 1.27065 1.01483 0.94861 0.93762 1.69664 1.38663 1.12039 1.27298 0.85472 0.77996 0.79560 0.78011 1.18193 1.16187 1.20708 0.89640 0.88881 0.91618 0.85484 0.91752 0.90358 0.87903 0.91040 0.84299 0.83969 0.85013 0.88402 0.89674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.50 8.14 71.98 0.59 -1.91 16 2 C -0.01 -0.32 2.97 -12.60 -0.04 -0.35 16 3 H 0.09 2.95 8.14 -2.39 -0.02 2.93 16 4 C 0.24 6.87 14.64 89.44 1.31 8.18 16 5 N -0.48 -15.66 18.54 20.01 0.37 -15.29 16 6 C 0.13 3.20 4.89 86.38 0.42 3.62 16 7 N -0.61 -17.67 2.70 -850.67 -2.30 -19.96 16 8 C 0.06 1.24 8.21 127.77 1.05 2.29 16 9 C 0.58 24.19 6.72 86.67 0.58 24.77 16 10 O -0.59 -30.71 14.79 -4.05 -0.06 -30.77 16 11 C -0.25 -10.67 4.91 -19.70 -0.10 -10.76 16 12 C -0.04 -1.34 7.66 22.50 0.17 -1.16 16 13 C -0.23 -6.90 10.03 22.41 0.22 -6.67 16 14 C -0.07 -2.27 10.01 22.26 0.22 -2.05 16 15 C -0.25 -10.90 7.16 22.72 0.16 -10.74 16 16 C 0.11 5.24 5.05 -21.11 -0.11 5.13 16 17 C -0.48 -27.08 8.84 23.41 0.21 -26.87 16 18 H 0.06 3.86 6.36 -2.91 -0.02 3.84 16 19 C 0.04 2.28 5.44 85.37 0.46 2.75 16 20 N -0.85 -47.61 13.92 21.88 0.30 -47.30 16 21 Si 0.97 40.82 24.56 68.60 1.68 42.51 16 22 H -0.26 -10.23 6.65 99.48 0.66 -9.57 16 23 H -0.24 -9.70 6.93 99.48 0.69 -9.01 16 24 H -0.28 -11.22 7.11 99.48 0.71 -10.51 16 25 H 0.08 1.53 5.87 -2.39 -0.01 1.51 16 26 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 27 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 28 H 0.13 2.00 8.07 -2.39 -0.02 1.98 16 29 H 0.06 1.97 7.36 -2.39 -0.02 1.95 16 30 H 0.08 1.12 7.49 -2.39 -0.02 1.10 16 31 H 0.10 1.26 5.93 -2.39 -0.01 1.25 16 32 H 0.07 1.65 5.85 -2.39 -0.01 1.64 16 33 H 0.14 3.46 6.59 -2.91 -0.02 3.44 16 34 H 0.14 3.22 8.06 -2.91 -0.02 3.20 16 35 H 0.13 3.66 8.06 -2.91 -0.02 3.64 16 36 H 0.10 4.34 4.96 -2.91 -0.01 4.33 16 37 H 0.29 14.66 8.29 -92.71 -0.77 13.89 16 Total: -1.00 -72.95 307.19 6.20 -66.75 By element: Atomic # 1 Polarization: 16.80 SS G_CDS: 1.04 Total: 17.84 kcal Atomic # 6 Polarization: -18.94 SS G_CDS: 5.16 Total: -13.78 kcal Atomic # 7 Polarization: -80.93 SS G_CDS: -1.62 Total: -82.55 kcal Atomic # 8 Polarization: -30.71 SS G_CDS: -0.06 Total: -30.77 kcal Atomic # 14 Polarization: 40.82 SS G_CDS: 1.68 Total: 42.51 kcal Total: -72.95 6.20 -66.75 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601011368.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.134 kcal (2) G-P(sol) polarization free energy of solvation -72.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds