Wall clock time and date at job start Mon Mar 30 2020 01:51:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46502 * 120.00414 * 2 1 4 4 C 1.50703 * 109.46879 * 270.00199 * 3 2 1 5 5 H 1.07994 * 119.99785 * 359.97438 * 4 3 2 6 6 C 1.37878 * 119.99726 * 180.02562 * 4 3 2 7 7 N 1.31512 * 120.00326 * 359.97438 * 6 4 3 8 8 Si 1.86803 * 119.99698 * 179.97438 * 6 4 3 9 9 H 1.48496 * 109.46846 * 89.99806 * 8 6 4 10 10 H 1.48502 * 109.47026 * 209.99691 * 8 6 4 11 11 H 1.48501 * 109.47212 * 329.99886 * 8 6 4 12 12 C 1.34782 * 120.00028 * 179.97438 * 2 1 3 13 13 O 1.21582 * 120.00211 * 184.87025 * 12 2 1 14 14 C 1.47580 * 119.99883 * 4.87498 * 12 2 1 15 15 C 1.40244 * 119.83138 * 320.16069 * 14 12 2 16 16 C 1.36194 * 120.37863 * 180.02562 * 15 14 12 17 17 C 1.39911 * 119.96060 * 359.97438 * 16 15 14 18 18 C 1.46254 * 133.83927 * 179.97438 * 17 16 15 19 19 C 1.34462 * 107.03386 * 179.97438 * 18 17 16 20 20 N 1.36559 * 109.97664 * 359.97438 * 19 18 17 21 21 C 1.46497 * 125.07346 * 179.97438 * 20 19 18 22 22 C 1.37824 * 109.85729 * 0.26816 * 20 19 18 23 23 C 1.38690 * 133.36567 * 180.42646 * 22 20 19 24 24 H 1.09003 * 109.47454 * 266.16018 * 1 2 3 25 25 H 1.09003 * 109.47044 * 26.15885 * 1 2 3 26 26 H 1.09001 * 109.47182 * 146.15752 * 1 2 3 27 27 H 1.09004 * 109.46959 * 29.99323 * 3 2 1 28 28 H 1.08998 * 109.47319 * 149.99395 * 3 2 1 29 29 H 0.96995 * 119.99650 * 180.02562 * 7 6 4 30 30 H 1.07999 * 119.81105 * 359.97438 * 15 14 12 31 31 H 1.08002 * 120.01795 * 179.97438 * 16 15 14 32 32 H 1.08000 * 126.48842 * 359.97438 * 18 17 16 33 33 H 1.07999 * 125.00804 * 180.02562 * 19 18 17 34 34 H 1.09003 * 109.46862 * 90.02638 * 21 20 19 35 35 H 1.09004 * 109.46635 * 330.03234 * 21 20 19 36 36 H 1.08994 * 109.47523 * 210.03323 * 21 20 19 37 37 H 1.07998 * 120.17013 * 359.27307 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4487 1.7037 -1.4209 5 1 2.0981 1.0957 -2.2417 6 6 3.1270 2.8773 -1.6728 7 7 3.5544 3.6174 -0.6732 8 14 3.4389 3.4162 -3.4340 9 1 2.3093 4.2594 -3.9010 10 1 4.6996 4.1986 -3.4964 11 1 3.5558 2.2188 -4.3047 12 6 2.1389 -1.1672 0.0005 13 8 3.3514 -1.1691 0.0899 14 6 1.4049 -2.4430 -0.1075 15 6 0.1931 -2.6110 0.5781 16 6 -0.4931 -3.7838 0.4867 17 6 0.0106 -4.8290 -0.2952 18 6 -0.4569 -6.1802 -0.6029 19 6 0.4533 -6.7348 -1.4226 20 7 1.4640 -5.8491 -1.6649 21 6 2.6283 -6.1122 -2.5142 22 6 1.2287 -4.6731 -0.9858 23 6 1.9179 -3.4732 -0.8921 24 1 -0.3634 -0.0688 1.0254 25 1 -0.3633 0.9224 -0.4531 26 1 -0.3633 -0.8536 -0.5723 27 1 1.6084 2.0284 0.5138 28 1 3.1499 1.1384 0.5139 29 1 4.0313 4.4432 -0.8506 30 1 -0.1978 -1.8060 1.1827 31 1 -1.4256 -3.9070 1.0175 32 1 -1.3620 -6.6448 -0.2403 33 1 0.3933 -7.7332 -1.8301 34 1 2.4050 -5.8151 -3.5389 35 1 2.8645 -7.1760 -2.4875 36 1 3.4816 -5.5413 -2.1481 37 1 2.8512 -3.3407 -1.4193 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601014292.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:05 Heat of formation + Delta-G solvation = 39.984881 kcal Electronic energy + Delta-G solvation = -20199.680724 eV Core-core repulsion = 17136.137876 eV Total energy + Delta-G solvation = -3063.542848 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.31317 -39.14661 -36.48644 -34.83332 -32.92266 -32.53453 -30.36398 -29.42461 -27.51693 -26.37020 -25.80744 -23.74832 -22.19017 -21.62278 -20.37557 -18.68067 -17.15506 -16.73669 -16.49245 -15.68798 -15.46469 -15.24267 -14.60549 -14.33140 -14.12190 -13.74912 -13.60045 -13.15834 -12.91135 -12.66094 -12.46797 -12.35729 -12.14918 -11.98589 -11.35167 -11.25060 -11.03048 -10.87896 -10.79243 -10.51556 -10.14565 -9.63458 -9.59434 -8.97645 -8.42072 -8.09251 -7.69204 -7.54002 -6.02572 -4.07418 1.04597 1.63015 2.61701 2.72193 3.31207 3.37374 3.41306 3.51512 3.92937 4.22429 4.45899 4.59161 4.68694 4.78304 5.00466 5.04212 5.17412 5.30082 5.31669 5.41127 5.52325 5.63036 5.69426 5.83882 5.89647 5.98808 6.09818 6.29776 6.50053 6.64608 6.73548 6.75815 7.11009 7.20786 7.22858 7.47627 7.57036 7.94272 8.25281 8.43354 8.91329 9.10185 9.57576 11.05479 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.025328 B = 0.004476 C = 0.004094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.243247 B = 6254.397372 C = 6836.975512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.594 5.594 3 C 0.244 3.756 4 C -0.527 4.527 5 H 0.057 0.943 6 C 0.061 3.939 7 N -0.894 5.894 8 Si 0.898 3.102 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.275 1.275 12 C 0.549 3.451 13 O -0.540 6.540 14 C -0.096 4.096 15 C -0.121 4.121 16 C -0.083 4.083 17 C -0.097 4.097 18 C -0.210 4.210 19 C 0.051 3.949 20 N -0.486 5.486 21 C 0.076 3.924 22 C 0.085 3.915 23 C -0.073 4.073 24 H 0.047 0.953 25 H 0.073 0.927 26 H 0.065 0.935 27 H 0.034 0.966 28 H 0.046 0.954 29 H 0.263 0.737 30 H 0.136 0.864 31 H 0.125 0.875 32 H 0.146 0.854 33 H 0.166 0.834 34 H 0.070 0.930 35 H 0.081 0.919 36 H 0.083 0.917 37 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.161 -19.529 -0.808 21.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.325 5.325 3 C 0.125 3.875 4 C -0.566 4.566 5 H 0.076 0.924 6 C -0.141 4.141 7 N -0.533 5.533 8 Si 0.726 3.274 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.199 1.199 12 C 0.336 3.664 13 O -0.419 6.419 14 C -0.101 4.101 15 C -0.140 4.140 16 C -0.102 4.102 17 C -0.102 4.102 18 C -0.235 4.235 19 C -0.075 4.075 20 N -0.170 5.170 21 C -0.065 4.065 22 C -0.020 4.020 23 C -0.095 4.095 24 H 0.065 0.935 25 H 0.092 0.908 26 H 0.084 0.916 27 H 0.052 0.948 28 H 0.064 0.936 29 H 0.073 0.927 30 H 0.153 0.847 31 H 0.143 0.857 32 H 0.163 0.837 33 H 0.184 0.816 34 H 0.088 0.912 35 H 0.100 0.900 36 H 0.102 0.898 37 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -8.134 -19.393 -0.936 21.051 hybrid contribution 0.184 0.332 -1.103 1.166 sum -7.950 -19.061 -2.038 20.753 Atomic orbital electron populations 1.21968 0.81443 1.03085 1.00048 1.48045 1.06286 1.07526 1.70618 1.19343 0.92740 0.77879 0.97563 1.21450 1.36508 1.06352 0.92289 0.92434 1.24933 0.95338 0.96376 0.97428 1.69933 1.38387 1.14311 1.30712 0.86495 0.77683 0.78572 0.84662 1.20602 1.21070 1.19943 1.18097 0.87083 0.83374 0.77869 1.90746 1.13625 1.87180 1.50318 1.19813 0.95922 0.94741 0.99581 1.21112 0.94214 0.98094 1.00606 1.20134 0.99836 0.91689 0.98515 1.19315 0.95079 0.95147 1.00644 1.21655 1.01963 0.94195 1.05732 1.21783 0.89148 0.95569 1.01010 1.43780 1.20367 1.11535 1.41282 1.21971 0.87196 1.02870 0.94498 1.18092 0.97284 0.88230 0.98364 1.19987 0.99552 0.89636 1.00277 0.93486 0.90822 0.91598 0.94783 0.93584 0.92707 0.84656 0.85744 0.83665 0.81647 0.91190 0.89997 0.89817 0.85570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.32 8.88 59.84 0.53 1.85 16 2 N -0.59 -13.29 2.86 -184.17 -0.53 -13.82 16 3 C 0.24 6.55 5.18 -5.19 -0.03 6.53 16 4 C -0.53 -15.24 9.39 -34.44 -0.32 -15.56 16 5 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 6 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 7 N -0.89 -26.86 13.29 55.43 0.74 -26.12 16 8 Si 0.90 22.07 29.54 -169.99 -5.02 17.05 16 9 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 10 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 11 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 12 C 0.55 12.45 7.32 -12.45 -0.09 12.35 16 13 O -0.54 -14.44 16.46 5.29 0.09 -14.36 16 14 C -0.10 -1.75 5.22 -104.94 -0.55 -2.30 16 15 C -0.12 -1.80 7.47 -39.56 -0.30 -2.10 16 16 C -0.08 -1.09 10.03 -39.69 -0.40 -1.49 16 17 C -0.10 -1.35 6.37 -105.05 -0.67 -2.01 16 18 C -0.21 -2.31 11.08 -37.70 -0.42 -2.73 16 19 C 0.05 0.50 11.28 -16.78 -0.19 0.31 16 20 N -0.49 -5.69 3.18 -121.85 -0.39 -6.08 16 21 C 0.08 0.63 11.02 59.85 0.66 1.29 16 22 C 0.09 1.26 6.80 -84.00 -0.57 0.69 16 23 C -0.07 -1.25 9.52 -39.03 -0.37 -1.62 16 24 H 0.05 0.66 6.91 -51.93 -0.36 0.30 16 25 H 0.07 1.25 8.04 -51.93 -0.42 0.84 16 26 H 0.07 1.01 5.79 -51.93 -0.30 0.70 16 27 H 0.03 0.91 8.07 -51.93 -0.42 0.49 16 28 H 0.05 1.39 7.36 -51.93 -0.38 1.01 16 29 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 30 H 0.14 1.80 5.34 -52.49 -0.28 1.52 16 31 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 32 H 0.15 1.22 8.06 -52.49 -0.42 0.80 16 33 H 0.17 0.97 8.06 -52.49 -0.42 0.55 16 34 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.08 0.73 8.10 -51.93 -0.42 0.31 16 37 H 0.13 2.17 8.05 -52.49 -0.42 1.75 16 LS Contribution 315.87 15.07 4.76 4.76 Total: -1.00 -35.37 315.87 -7.82 -43.18 By element: Atomic # 1 Polarization: 3.15 SS G_CDS: -4.66 Total: -1.51 kcal Atomic # 6 Polarization: -0.30 SS G_CDS: -2.81 Total: -3.11 kcal Atomic # 7 Polarization: -45.84 SS G_CDS: -0.18 Total: -46.02 kcal Atomic # 8 Polarization: -14.44 SS G_CDS: 0.09 Total: -14.36 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -35.37 -7.82 -43.18 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601014292.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.168 kcal (2) G-P(sol) polarization free energy of solvation -35.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.183 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds