Wall clock time and date at job start Mon Mar 30 2020 01:51:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46502 * 120.00414 * 2 1 4 4 C 1.50703 * 109.46879 * 270.00199 * 3 2 1 5 5 H 1.07994 * 119.99785 * 359.97438 * 4 3 2 6 6 C 1.37878 * 119.99726 * 180.02562 * 4 3 2 7 7 N 1.31512 * 120.00326 * 359.97438 * 6 4 3 8 8 Si 1.86803 * 119.99698 * 179.97438 * 6 4 3 9 9 H 1.48496 * 109.46846 * 89.99806 * 8 6 4 10 10 H 1.48502 * 109.47026 * 209.99691 * 8 6 4 11 11 H 1.48501 * 109.47212 * 329.99886 * 8 6 4 12 12 C 1.34782 * 120.00028 * 179.97438 * 2 1 3 13 13 O 1.21582 * 120.00211 * 184.87025 * 12 2 1 14 14 C 1.47580 * 119.99883 * 4.87498 * 12 2 1 15 15 C 1.40244 * 119.83138 * 320.16069 * 14 12 2 16 16 C 1.36194 * 120.37863 * 180.02562 * 15 14 12 17 17 C 1.39911 * 119.96060 * 359.97438 * 16 15 14 18 18 C 1.46254 * 133.83927 * 179.97438 * 17 16 15 19 19 C 1.34462 * 107.03386 * 179.97438 * 18 17 16 20 20 N 1.36559 * 109.97664 * 359.97438 * 19 18 17 21 21 C 1.46497 * 125.07346 * 179.97438 * 20 19 18 22 22 C 1.37824 * 109.85729 * 0.26816 * 20 19 18 23 23 C 1.38690 * 133.36567 * 180.42646 * 22 20 19 24 24 H 1.09003 * 109.47454 * 266.16018 * 1 2 3 25 25 H 1.09003 * 109.47044 * 26.15885 * 1 2 3 26 26 H 1.09001 * 109.47182 * 146.15752 * 1 2 3 27 27 H 1.09004 * 109.46959 * 29.99323 * 3 2 1 28 28 H 1.08998 * 109.47319 * 149.99395 * 3 2 1 29 29 H 0.96995 * 119.99650 * 180.02562 * 7 6 4 30 30 H 1.07999 * 119.81105 * 359.97438 * 15 14 12 31 31 H 1.08002 * 120.01795 * 179.97438 * 16 15 14 32 32 H 1.08000 * 126.48842 * 359.97438 * 18 17 16 33 33 H 1.07999 * 125.00804 * 180.02562 * 19 18 17 34 34 H 1.09003 * 109.46862 * 90.02638 * 21 20 19 35 35 H 1.09004 * 109.46635 * 330.03234 * 21 20 19 36 36 H 1.08994 * 109.47523 * 210.03323 * 21 20 19 37 37 H 1.07998 * 120.17013 * 359.27307 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4487 1.7037 -1.4209 5 1 2.0981 1.0957 -2.2417 6 6 3.1270 2.8773 -1.6728 7 7 3.5544 3.6174 -0.6732 8 14 3.4389 3.4162 -3.4340 9 1 2.3093 4.2594 -3.9010 10 1 4.6996 4.1986 -3.4964 11 1 3.5558 2.2188 -4.3047 12 6 2.1389 -1.1672 0.0005 13 8 3.3514 -1.1691 0.0899 14 6 1.4049 -2.4430 -0.1075 15 6 0.1931 -2.6110 0.5781 16 6 -0.4931 -3.7838 0.4867 17 6 0.0106 -4.8290 -0.2952 18 6 -0.4569 -6.1802 -0.6029 19 6 0.4533 -6.7348 -1.4226 20 7 1.4640 -5.8491 -1.6649 21 6 2.6283 -6.1122 -2.5142 22 6 1.2287 -4.6731 -0.9858 23 6 1.9179 -3.4732 -0.8921 24 1 -0.3634 -0.0688 1.0254 25 1 -0.3633 0.9224 -0.4531 26 1 -0.3633 -0.8536 -0.5723 27 1 1.6084 2.0284 0.5138 28 1 3.1499 1.1384 0.5139 29 1 4.0313 4.4432 -0.8506 30 1 -0.1978 -1.8060 1.1827 31 1 -1.4256 -3.9070 1.0175 32 1 -1.3620 -6.6448 -0.2403 33 1 0.3933 -7.7332 -1.8301 34 1 2.4050 -5.8151 -3.5389 35 1 2.8645 -7.1760 -2.4875 36 1 3.4816 -5.5413 -2.1481 37 1 2.8512 -3.3407 -1.4193 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601014292.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:04 Heat of formation + Delta-G solvation = 17.606468 kcal Electronic energy + Delta-G solvation = -20200.651125 eV Core-core repulsion = 17136.137876 eV Total energy + Delta-G solvation = -3064.513249 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.30301 -40.77112 -37.71868 -36.70193 -34.75597 -33.77677 -31.45909 -30.80941 -29.23213 -27.59340 -27.04040 -25.52660 -23.55104 -22.87353 -21.36210 -20.17394 -18.71922 -18.34151 -17.81410 -17.32587 -16.83516 -16.41839 -16.25259 -15.92536 -15.36899 -14.96076 -14.84958 -14.32864 -14.14719 -13.97420 -13.73565 -13.68179 -13.51340 -13.25546 -13.18203 -12.89234 -12.60183 -12.47046 -12.24844 -12.09886 -11.92037 -11.73357 -10.78613 -10.66409 -10.64242 -9.49815 -9.16885 -8.57713 -8.24592 -6.40273 -0.11945 0.52124 1.34715 1.37960 1.48253 1.63872 1.83905 2.03610 2.31889 2.43763 2.92291 3.04428 3.59236 3.77510 3.90383 3.97884 4.11827 4.28985 4.39713 4.43356 4.53042 4.63674 4.67300 4.70075 4.75372 4.93358 4.98138 5.02835 5.05850 5.19039 5.39667 5.49783 5.54338 5.75152 5.80436 5.83784 6.02724 6.18241 6.41989 6.64444 6.70231 7.22132 7.37954 8.82653 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.025328 B = 0.004476 C = 0.004094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.243247 B = 6254.397372 C = 6836.975512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.600 5.600 3 C 0.257 3.743 4 C -0.547 4.547 5 H 0.050 0.950 6 C 0.009 3.991 7 N -0.927 5.927 8 Si 0.970 3.030 9 H -0.261 1.261 10 H -0.278 1.278 11 H -0.275 1.275 12 C 0.542 3.458 13 O -0.600 6.600 14 C -0.123 4.123 15 C -0.124 4.124 16 C -0.072 4.072 17 C -0.105 4.105 18 C -0.221 4.221 19 C 0.067 3.933 20 N -0.491 5.491 21 C 0.069 3.931 22 C 0.062 3.938 23 C -0.086 4.086 24 H 0.081 0.919 25 H 0.070 0.930 26 H 0.086 0.914 27 H 0.031 0.969 28 H 0.000 1.000 29 H 0.269 0.731 30 H 0.150 0.850 31 H 0.163 0.837 32 H 0.176 0.824 33 H 0.213 0.787 34 H 0.078 0.922 35 H 0.117 0.883 36 H 0.068 0.932 37 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.755 -22.172 -1.974 25.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.329 5.329 3 C 0.136 3.864 4 C -0.586 4.586 5 H 0.069 0.931 6 C -0.190 4.190 7 N -0.566 5.566 8 Si 0.794 3.206 9 H -0.185 1.185 10 H -0.203 1.203 11 H -0.200 1.200 12 C 0.332 3.668 13 O -0.483 6.483 14 C -0.127 4.127 15 C -0.143 4.143 16 C -0.090 4.090 17 C -0.110 4.110 18 C -0.245 4.245 19 C -0.059 4.059 20 N -0.173 5.173 21 C -0.072 4.072 22 C -0.044 4.044 23 C -0.107 4.107 24 H 0.100 0.900 25 H 0.089 0.911 26 H 0.105 0.895 27 H 0.049 0.951 28 H 0.018 0.982 29 H 0.078 0.922 30 H 0.167 0.833 31 H 0.180 0.820 32 H 0.193 0.807 33 H 0.229 0.771 34 H 0.096 0.904 35 H 0.136 0.864 36 H 0.087 0.913 37 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -10.779 -22.052 -2.104 24.635 hybrid contribution 0.972 0.979 -0.741 1.567 sum -9.807 -21.072 -2.845 23.416 Atomic orbital electron populations 1.22261 0.77895 1.03855 1.02641 1.48052 1.08505 1.06054 1.70303 1.18852 0.91281 0.79911 0.96316 1.21676 1.37286 1.06809 0.92817 0.93137 1.25869 0.94670 0.96240 1.02207 1.70050 1.38713 1.14759 1.33088 0.85382 0.78270 0.78164 0.78781 1.18541 1.20319 1.20000 1.18881 0.86706 0.84878 0.76354 1.90686 1.16368 1.88208 1.53048 1.19459 0.97713 0.92752 1.02801 1.21183 0.93009 0.99599 1.00522 1.20504 1.00509 0.90413 0.97591 1.19853 0.94570 0.96734 0.99865 1.22061 1.03481 0.92745 1.06248 1.22611 0.87396 0.96605 0.99271 1.44142 1.21552 1.10759 1.40891 1.22207 0.85815 1.04927 0.94210 1.18123 0.97900 0.88598 0.99775 1.19872 0.99257 0.90946 1.00656 0.90037 0.91111 0.89547 0.95140 0.98197 0.92240 0.83267 0.81968 0.80702 0.77062 0.90374 0.86430 0.91288 0.87677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.52 8.88 127.77 1.13 3.65 16 2 N -0.60 -28.11 2.86 -854.86 -2.44 -30.56 16 3 C 0.26 14.68 5.18 85.63 0.44 15.13 16 4 C -0.55 -32.95 9.39 25.60 0.24 -32.71 16 5 H 0.05 3.03 7.81 -2.91 -0.02 3.01 16 6 C 0.01 0.55 5.46 84.66 0.46 1.01 16 7 N -0.93 -57.23 13.29 21.45 0.28 -56.94 16 8 Si 0.97 45.94 29.54 68.60 2.03 47.97 16 9 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 10 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 11 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 12 C 0.54 26.20 7.32 86.71 0.63 26.83 16 13 O -0.60 -34.94 16.46 -3.98 -0.07 -35.00 16 14 C -0.12 -4.65 5.22 -20.07 -0.10 -4.75 16 15 C -0.12 -3.55 7.47 22.28 0.17 -3.39 16 16 C -0.07 -1.69 10.03 22.20 0.22 -1.47 16 17 C -0.10 -2.63 6.37 -20.14 -0.13 -2.76 16 18 C -0.22 -3.89 11.08 23.49 0.26 -3.63 16 19 C 0.07 1.01 11.28 83.09 0.94 1.95 16 20 N -0.49 -10.33 3.18 -539.41 -1.71 -12.04 16 21 C 0.07 1.02 11.02 127.77 1.41 2.43 16 22 C 0.06 1.79 6.80 38.96 0.26 2.05 16 23 C -0.09 -3.07 9.52 22.63 0.22 -2.85 16 24 H 0.08 2.17 6.91 -2.39 -0.02 2.15 16 25 H 0.07 2.40 8.04 -2.39 -0.02 2.38 16 26 H 0.09 2.56 5.79 -2.39 -0.01 2.54 16 27 H 0.03 1.73 8.07 -2.38 -0.02 1.71 16 28 H 0.00 -0.01 7.36 -2.39 -0.02 -0.02 16 29 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 30 H 0.15 3.71 5.34 -2.91 -0.02 3.70 16 31 H 0.16 2.54 8.06 -2.91 -0.02 2.52 16 32 H 0.18 1.97 8.06 -2.91 -0.02 1.95 16 33 H 0.21 1.14 8.06 -2.91 -0.02 1.12 16 34 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 35 H 0.12 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.07 1.22 8.10 -2.39 -0.02 1.20 16 37 H 0.11 4.01 8.05 -2.91 -0.02 3.99 16 Total: -1.00 -82.70 315.87 5.32 -77.38 By element: Atomic # 1 Polarization: 6.62 SS G_CDS: 1.07 Total: 7.69 kcal Atomic # 6 Polarization: -4.65 SS G_CDS: 6.16 Total: 1.50 kcal Atomic # 7 Polarization: -95.67 SS G_CDS: -3.87 Total: -99.54 kcal Atomic # 8 Polarization: -34.94 SS G_CDS: -0.07 Total: -35.00 kcal Atomic # 14 Polarization: 45.94 SS G_CDS: 2.03 Total: 47.97 kcal Total: -82.70 5.32 -77.38 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601014292.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.983 kcal (2) G-P(sol) polarization free energy of solvation -82.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.377 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds