Wall clock time and date at job start Mon Mar 30 2020 01:36:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 C 1.50698 * 109.47184 * 119.99962 * 2 1 3 5 5 H 1.08004 * 119.99528 * 119.99911 * 4 2 1 6 6 C 1.37876 * 120.00356 * 300.00710 * 4 2 1 7 7 N 1.31518 * 119.99554 * 359.97438 * 6 4 2 8 8 Si 1.86790 * 120.00086 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.47337 * 359.97438 * 8 6 4 10 10 H 1.48504 * 109.47146 * 119.99673 * 8 6 4 11 11 H 1.48499 * 109.47460 * 239.99758 * 8 6 4 12 12 N 1.46500 * 109.47249 * 240.00642 * 2 1 3 13 13 C 1.34770 * 120.00256 * 84.99846 * 12 2 1 14 14 O 1.21592 * 120.00149 * 359.97438 * 13 12 2 15 15 C 1.47577 * 119.99922 * 180.02562 * 13 12 2 16 16 C 1.40235 * 119.83587 * 359.97438 * 15 13 12 17 17 C 1.36194 * 120.38373 * 180.02562 * 16 15 13 18 18 C 1.39920 * 119.95688 * 0.02562 * 17 16 15 19 19 C 1.46258 * 133.83447 * 180.02562 * 18 17 16 20 20 C 1.34450 * 107.02982 * 179.97438 * 19 18 17 21 21 N 1.36561 * 109.97839 * 359.97438 * 20 19 18 22 22 C 1.46509 * 125.06886 * 180.02562 * 21 20 19 23 23 C 1.37815 * 109.86170 * 359.97438 * 21 20 19 24 24 C 1.38694 * 133.37754 * 180.32834 * 23 21 20 25 25 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 27 27 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 28 28 H 0.97005 * 119.99198 * 180.02562 * 7 6 4 29 29 H 0.97005 * 119.99374 * 264.99912 * 12 2 1 30 30 H 1.08010 * 119.81021 * 0.02562 * 16 15 13 31 31 H 1.08004 * 120.02444 * 179.97438 * 17 16 15 32 32 H 1.07992 * 126.48228 * 0.02562 * 19 18 17 33 33 H 1.08002 * 125.01109 * 179.97438 * 20 19 18 34 34 H 1.09000 * 109.47136 * 89.97444 * 22 21 20 35 35 H 1.08998 * 109.46699 * 209.97583 * 22 21 20 36 36 H 1.09003 * 109.46773 * 329.97282 * 22 21 20 37 37 H 1.07995 * 120.16409 * 359.90924 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2395 2.4827 7 7 0.9434 0.8300 2.6034 8 14 2.3214 -1.1205 4.0078 9 1 3.1456 -2.2877 3.6036 10 1 3.1466 -0.1875 4.8164 11 1 1.1661 -1.5869 4.8159 12 7 2.0184 -0.6905 -1.1962 13 6 2.1471 -0.0181 -2.3571 14 8 1.8575 1.1616 -2.4118 15 6 2.6386 -0.7138 -3.5622 16 6 2.9711 -2.0745 -3.4954 17 6 3.4262 -2.7275 -4.6006 18 6 3.5644 -2.0396 -5.8112 19 6 4.0108 -2.4245 -7.1497 20 6 3.9298 -1.3272 -7.9225 21 7 3.4677 -0.2726 -7.1883 22 6 3.2529 1.0820 -7.7036 23 6 3.2324 -0.6727 -5.8907 24 6 2.7639 -0.0171 -4.7618 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 0.7094 1.1615 3.4845 29 1 2.2491 -1.6317 -1.1527 30 1 2.8658 -2.6078 -2.5621 31 1 3.6810 -3.7755 -4.5425 32 1 4.3420 -3.4047 -7.4590 33 1 4.1915 -1.2860 -8.9695 34 1 2.2347 1.1694 -8.0824 35 1 3.4055 1.8042 -6.9015 36 1 3.9590 1.2801 -8.5101 37 1 2.5032 1.0297 -4.8112 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601022921.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:27 Heat of formation + Delta-G solvation = 23.577640 kcal Electronic energy + Delta-G solvation = -19903.294209 eV Core-core repulsion = 16839.039890 eV Total energy + Delta-G solvation = -3064.254319 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.33384 -39.00395 -36.54384 -34.77100 -32.90249 -32.37415 -30.34852 -29.73604 -28.13290 -26.35444 -25.22766 -23.46770 -22.09618 -20.85298 -20.35977 -19.30203 -17.69330 -16.92095 -16.17616 -15.59708 -15.46763 -15.24511 -14.65530 -14.13860 -14.07194 -13.69181 -13.50955 -13.16713 -12.92759 -12.83868 -12.52344 -12.37254 -11.77441 -11.69801 -11.21089 -11.06043 -10.91689 -10.86261 -10.68868 -10.27108 -10.20845 -9.64586 -9.09598 -8.99843 -8.52712 -8.21346 -7.86603 -7.63251 -6.09684 -4.18615 0.95944 1.58205 2.56657 2.68651 3.26104 3.33755 3.36804 3.51219 4.10871 4.29876 4.40480 4.55493 4.66121 4.75447 4.97048 5.07522 5.22719 5.24658 5.34903 5.38221 5.53413 5.60403 5.77816 5.87669 6.07744 6.51773 6.60988 6.70275 6.71906 6.87646 7.01298 7.16703 7.18443 7.19501 7.49259 7.60892 7.73528 7.95469 8.17963 8.70495 8.81421 9.15614 9.48899 10.96476 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.035956 B = 0.003777 C = 0.003524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.544834 B = 7411.088916 C = 7943.961532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.263 3.737 3 H 0.050 0.950 4 C -0.532 4.532 5 H 0.062 0.938 6 C 0.066 3.934 7 N -0.884 5.884 8 Si 0.902 3.098 9 H -0.272 1.272 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.701 5.701 13 C 0.544 3.456 14 O -0.556 6.556 15 C -0.104 4.104 16 C -0.113 4.113 17 C -0.082 4.082 18 C -0.094 4.094 19 C -0.210 4.210 20 C 0.052 3.948 21 N -0.486 5.486 22 C 0.077 3.923 23 C 0.082 3.918 24 C -0.068 4.068 25 H 0.027 0.973 26 H 0.090 0.910 27 H 0.015 0.985 28 H 0.263 0.737 29 H 0.389 0.611 30 H 0.129 0.871 31 H 0.126 0.874 32 H 0.146 0.854 33 H 0.167 0.833 34 H 0.069 0.931 35 H 0.083 0.917 36 H 0.082 0.918 37 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.347 -5.393 -19.915 21.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.161 3.839 3 H 0.068 0.932 4 C -0.571 4.571 5 H 0.080 0.920 6 C -0.137 4.137 7 N -0.521 5.521 8 Si 0.730 3.270 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.209 1.209 12 N -0.348 5.348 13 C 0.330 3.670 14 O -0.436 6.436 15 C -0.108 4.108 16 C -0.133 4.133 17 C -0.100 4.100 18 C -0.099 4.099 19 C -0.235 4.235 20 C -0.074 4.074 21 N -0.170 5.170 22 C -0.065 4.065 23 C -0.023 4.023 24 C -0.089 4.089 25 H 0.046 0.954 26 H 0.109 0.891 27 H 0.034 0.966 28 H 0.073 0.927 29 H 0.223 0.777 30 H 0.147 0.853 31 H 0.144 0.856 32 H 0.164 0.836 33 H 0.184 0.816 34 H 0.088 0.912 35 H 0.102 0.898 36 H 0.100 0.900 37 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 4.994 -4.092 -19.897 20.918 hybrid contribution 0.391 -0.842 0.779 1.212 sum 5.385 -4.934 -19.118 20.465 Atomic orbital electron populations 1.22079 0.98376 0.99184 1.00928 1.18784 0.91097 0.94064 0.79906 0.93246 1.21263 1.32322 1.13215 0.90293 0.91959 1.24891 0.94822 0.94969 0.99067 1.69923 1.35983 1.22490 1.23733 0.86384 0.78587 0.79539 0.82536 1.19693 1.20893 1.20893 1.46470 1.64422 1.13608 1.10317 1.18121 0.78789 0.86698 0.83382 1.90715 1.51905 1.15763 1.85255 1.19886 1.02831 0.94181 0.93934 1.20835 1.00115 0.93523 0.98834 1.20144 0.99734 0.99471 0.90680 1.19340 1.03508 0.92635 0.94438 1.21670 1.11164 0.98799 0.91909 1.21794 1.01672 0.86555 0.97366 1.43783 1.56162 1.09566 1.07474 1.21972 1.02483 0.81255 1.00794 1.18123 1.04346 0.94364 0.85437 1.20063 0.99587 1.00021 0.89232 0.95411 0.89104 0.96605 0.92657 0.77719 0.85316 0.85649 0.83604 0.81587 0.91211 0.89814 0.89974 0.85108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.76 9.26 37.16 0.34 -3.41 16 2 C 0.26 6.89 2.56 -69.08 -0.18 6.71 16 3 H 0.05 1.48 7.58 -51.93 -0.39 1.09 16 4 C -0.53 -14.34 8.73 -34.44 -0.30 -14.64 16 5 H 0.06 1.60 7.74 -52.48 -0.41 1.20 16 6 C 0.07 1.78 5.30 -17.82 -0.09 1.69 16 7 N -0.88 -25.16 11.32 55.43 0.63 -24.54 16 8 Si 0.90 20.82 29.54 -169.99 -5.02 15.80 16 9 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 10 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 12 N -0.70 -15.39 5.02 -55.96 -0.28 -15.67 16 13 C 0.54 11.81 7.72 -12.45 -0.10 11.71 16 14 O -0.56 -13.99 15.97 5.29 0.08 -13.91 16 15 C -0.10 -1.83 5.87 -104.95 -0.62 -2.45 16 16 C -0.11 -1.69 9.46 -39.57 -0.37 -2.06 16 17 C -0.08 -1.08 10.03 -39.69 -0.40 -1.48 16 18 C -0.09 -1.29 6.37 -105.04 -0.67 -1.96 16 19 C -0.21 -2.27 11.08 -37.70 -0.42 -2.68 16 20 C 0.05 0.49 11.28 -16.78 -0.19 0.30 16 21 N -0.49 -5.44 3.18 -121.84 -0.39 -5.82 16 22 C 0.08 0.58 11.02 59.85 0.66 1.24 16 23 C 0.08 1.18 6.80 -84.00 -0.57 0.61 16 24 C -0.07 -1.10 9.49 -39.02 -0.37 -1.47 16 25 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.09 2.49 6.07 -51.93 -0.32 2.18 16 27 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 29 H 0.39 7.41 6.53 -40.82 -0.27 7.14 16 30 H 0.13 1.71 6.36 -52.48 -0.33 1.38 16 31 H 0.13 1.31 8.06 -52.48 -0.42 0.89 16 32 H 0.15 1.21 8.06 -52.49 -0.42 0.78 16 33 H 0.17 0.91 8.06 -52.49 -0.42 0.49 16 34 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 35 H 0.08 0.66 8.10 -51.93 -0.42 0.24 16 36 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 37 H 0.13 2.13 7.62 -52.49 -0.40 1.73 16 LS Contribution 316.36 15.07 4.77 4.77 Total: -1.00 -33.03 316.36 -8.11 -41.14 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: -4.63 Total: 6.12 kcal Atomic # 6 Polarization: -4.62 SS G_CDS: -3.27 Total: -7.89 kcal Atomic # 7 Polarization: -45.99 SS G_CDS: -0.04 Total: -46.03 kcal Atomic # 8 Polarization: -13.99 SS G_CDS: 0.08 Total: -13.91 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -33.03 -8.11 -41.14 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601022921.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.720 kcal (2) G-P(sol) polarization free energy of solvation -33.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.142 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds