Wall clock time and date at job start Mon Mar 30 2020 01:36:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 C 1.50698 * 109.47184 * 119.99962 * 2 1 3 5 5 H 1.08004 * 119.99528 * 119.99911 * 4 2 1 6 6 C 1.37876 * 120.00356 * 300.00710 * 4 2 1 7 7 N 1.31518 * 119.99554 * 359.97438 * 6 4 2 8 8 Si 1.86790 * 120.00086 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.47337 * 359.97438 * 8 6 4 10 10 H 1.48504 * 109.47146 * 119.99673 * 8 6 4 11 11 H 1.48499 * 109.47460 * 239.99758 * 8 6 4 12 12 N 1.46500 * 109.47249 * 240.00642 * 2 1 3 13 13 C 1.34770 * 120.00256 * 84.99846 * 12 2 1 14 14 O 1.21592 * 120.00149 * 359.97438 * 13 12 2 15 15 C 1.47577 * 119.99922 * 180.02562 * 13 12 2 16 16 C 1.40235 * 119.83587 * 359.97438 * 15 13 12 17 17 C 1.36194 * 120.38373 * 180.02562 * 16 15 13 18 18 C 1.39920 * 119.95688 * 0.02562 * 17 16 15 19 19 C 1.46258 * 133.83447 * 180.02562 * 18 17 16 20 20 C 1.34450 * 107.02982 * 179.97438 * 19 18 17 21 21 N 1.36561 * 109.97839 * 359.97438 * 20 19 18 22 22 C 1.46509 * 125.06886 * 180.02562 * 21 20 19 23 23 C 1.37815 * 109.86170 * 359.97438 * 21 20 19 24 24 C 1.38694 * 133.37754 * 180.32834 * 23 21 20 25 25 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 27 27 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 28 28 H 0.97005 * 119.99198 * 180.02562 * 7 6 4 29 29 H 0.97005 * 119.99374 * 264.99912 * 12 2 1 30 30 H 1.08010 * 119.81021 * 0.02562 * 16 15 13 31 31 H 1.08004 * 120.02444 * 179.97438 * 17 16 15 32 32 H 1.07992 * 126.48228 * 0.02562 * 19 18 17 33 33 H 1.08002 * 125.01109 * 179.97438 * 20 19 18 34 34 H 1.09000 * 109.47136 * 89.97444 * 22 21 20 35 35 H 1.08998 * 109.46699 * 209.97583 * 22 21 20 36 36 H 1.09003 * 109.46773 * 329.97282 * 22 21 20 37 37 H 1.07995 * 120.16409 * 359.90924 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2395 2.4827 7 7 0.9434 0.8300 2.6034 8 14 2.3214 -1.1205 4.0078 9 1 3.1456 -2.2877 3.6036 10 1 3.1466 -0.1875 4.8164 11 1 1.1661 -1.5869 4.8159 12 7 2.0184 -0.6905 -1.1962 13 6 2.1471 -0.0181 -2.3571 14 8 1.8575 1.1616 -2.4118 15 6 2.6386 -0.7138 -3.5622 16 6 2.9711 -2.0745 -3.4954 17 6 3.4262 -2.7275 -4.6006 18 6 3.5644 -2.0396 -5.8112 19 6 4.0108 -2.4245 -7.1497 20 6 3.9298 -1.3272 -7.9225 21 7 3.4677 -0.2726 -7.1883 22 6 3.2529 1.0820 -7.7036 23 6 3.2324 -0.6727 -5.8907 24 6 2.7639 -0.0171 -4.7618 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 0.7094 1.1615 3.4845 29 1 2.2491 -1.6317 -1.1527 30 1 2.8658 -2.6078 -2.5621 31 1 3.6810 -3.7755 -4.5425 32 1 4.3420 -3.4047 -7.4590 33 1 4.1915 -1.2860 -8.9695 34 1 2.2347 1.1694 -8.0824 35 1 3.4055 1.8042 -6.9015 36 1 3.9590 1.2801 -8.5101 37 1 2.5032 1.0297 -4.8112 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601022921.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:27 Heat of formation + Delta-G solvation = 2.966347 kcal Electronic energy + Delta-G solvation = -19904.187982 eV Core-core repulsion = 16839.039890 eV Total energy + Delta-G solvation = -3065.148092 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.29101 -40.65474 -37.74649 -36.73757 -34.37663 -33.78325 -31.55125 -31.20802 -29.58959 -27.35637 -27.13441 -24.86557 -23.15494 -22.58106 -21.40960 -20.93011 -19.17409 -18.11232 -17.52257 -17.30863 -16.77467 -16.36693 -16.30390 -15.79460 -15.27438 -14.95861 -14.79931 -14.40363 -14.34551 -13.90134 -13.80404 -13.64639 -13.20566 -12.99918 -12.90440 -12.79801 -12.72363 -12.29696 -12.16529 -12.10583 -11.97289 -11.11199 -10.88352 -10.67194 -10.60836 -9.83711 -9.20902 -8.59439 -8.17994 -6.35808 -0.20896 0.48755 1.45476 1.45924 1.58792 1.64232 1.86524 2.13969 2.35600 2.60569 2.98495 3.12715 3.68677 3.86615 3.89231 4.00353 4.15480 4.31607 4.41748 4.52090 4.64828 4.69750 4.72426 4.77679 4.90445 5.02274 5.03435 5.07033 5.33889 5.43130 5.50109 5.58800 5.65199 5.74424 5.79261 5.90679 6.07487 6.16650 6.40568 6.71095 6.91553 7.30154 7.48455 8.89017 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.035956 B = 0.003777 C = 0.003524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.544834 B = 7411.088916 C = 7943.961532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.269 3.731 3 H -0.001 1.001 4 C -0.547 4.547 5 H 0.075 0.925 6 C 0.014 3.986 7 N -0.918 5.918 8 Si 0.976 3.024 9 H -0.259 1.259 10 H -0.283 1.283 11 H -0.277 1.277 12 N -0.696 5.696 13 C 0.542 3.458 14 O -0.603 6.603 15 C -0.133 4.133 16 C -0.119 4.119 17 C -0.076 4.076 18 C -0.102 4.102 19 C -0.224 4.224 20 C 0.071 3.929 21 N -0.489 5.489 22 C 0.069 3.931 23 C 0.059 3.941 24 C -0.073 4.073 25 H 0.042 0.958 26 H 0.070 0.930 27 H 0.010 0.990 28 H 0.266 0.734 29 H 0.405 0.595 30 H 0.140 0.860 31 H 0.159 0.841 32 H 0.174 0.826 33 H 0.214 0.786 34 H 0.079 0.921 35 H 0.071 0.929 36 H 0.117 0.883 37 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.866 -8.037 -22.085 24.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.165 3.835 3 H 0.017 0.983 4 C -0.585 4.585 5 H 0.093 0.907 6 C -0.186 4.186 7 N -0.557 5.557 8 Si 0.800 3.200 9 H -0.182 1.182 10 H -0.209 1.209 11 H -0.203 1.203 12 N -0.345 5.345 13 C 0.331 3.669 14 O -0.487 6.487 15 C -0.137 4.137 16 C -0.139 4.139 17 C -0.094 4.094 18 C -0.108 4.108 19 C -0.249 4.249 20 C -0.055 4.055 21 N -0.172 5.172 22 C -0.072 4.072 23 C -0.047 4.047 24 C -0.095 4.095 25 H 0.061 0.939 26 H 0.088 0.912 27 H 0.029 0.971 28 H 0.075 0.925 29 H 0.241 0.759 30 H 0.158 0.842 31 H 0.176 0.824 32 H 0.191 0.809 33 H 0.231 0.769 34 H 0.097 0.903 35 H 0.090 0.910 36 H 0.135 0.865 37 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 6.524 -6.765 -22.099 24.015 hybrid contribution -0.042 0.030 1.224 1.225 sum 6.482 -6.735 -20.875 22.872 Atomic orbital electron populations 1.21904 0.98142 0.99600 0.99591 1.18423 0.91281 0.91995 0.81753 0.98315 1.21565 1.32675 1.13639 0.90660 0.90719 1.25838 0.94803 0.95593 1.02400 1.70071 1.37005 1.23956 1.24618 0.85233 0.78112 0.78501 0.78106 1.18248 1.20922 1.20280 1.46200 1.64583 1.14231 1.09445 1.18776 0.77579 0.86239 0.84304 1.90671 1.53989 1.17945 1.86095 1.19538 1.06229 0.95546 0.92427 1.20921 1.00498 0.92235 1.00204 1.20475 0.98267 1.00840 0.89860 1.19864 1.02596 0.92354 0.95960 1.22064 1.11739 1.00673 0.90376 1.22623 0.98658 0.85244 0.98987 1.44152 1.55324 1.11243 1.06460 1.22234 1.04187 0.79445 1.01313 1.18162 1.05100 0.95054 0.86408 1.19981 0.99988 0.99454 0.90039 0.93914 0.91168 0.97116 0.92485 0.75878 0.84208 0.82369 0.80851 0.76922 0.90260 0.91014 0.86467 0.86618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -7.11 9.26 71.98 0.67 -6.45 16 2 C 0.27 14.72 2.56 44.25 0.11 14.83 16 3 H 0.00 -0.07 7.58 -2.39 -0.02 -0.09 16 4 C -0.55 -29.91 8.73 25.60 0.22 -29.69 16 5 H 0.07 3.80 7.74 -2.91 -0.02 3.78 16 6 C 0.01 0.74 5.30 84.65 0.45 1.19 16 7 N -0.92 -53.73 11.32 21.45 0.24 -53.49 16 8 Si 0.98 42.66 29.54 68.60 2.03 44.68 16 9 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16 10 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 11 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 12 N -0.70 -31.80 5.02 -449.23 -2.25 -34.05 16 13 C 0.54 24.92 7.72 86.71 0.67 25.59 16 14 O -0.60 -32.70 15.97 -4.00 -0.06 -32.76 16 15 C -0.13 -4.88 5.87 -20.08 -0.12 -4.99 16 16 C -0.12 -3.48 9.46 22.28 0.21 -3.27 16 17 C -0.08 -1.86 10.03 22.20 0.22 -1.64 16 18 C -0.10 -2.56 6.37 -20.14 -0.13 -2.69 16 19 C -0.22 -3.92 11.08 23.49 0.26 -3.66 16 20 C 0.07 1.02 11.28 83.09 0.94 1.96 16 21 N -0.49 -9.70 3.18 -539.39 -1.71 -11.42 16 22 C 0.07 0.90 11.02 127.77 1.41 2.31 16 23 C 0.06 1.63 6.80 38.96 0.26 1.90 16 24 C -0.07 -2.48 9.49 22.63 0.21 -2.27 16 25 H 0.04 2.08 8.14 -2.39 -0.02 2.06 16 26 H 0.07 4.03 6.07 -2.39 -0.01 4.01 16 27 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 28 H 0.27 14.62 8.31 -92.70 -0.77 13.85 16 29 H 0.40 15.63 6.53 -92.70 -0.61 15.03 16 30 H 0.14 3.61 6.36 -2.91 -0.02 3.60 16 31 H 0.16 2.73 8.06 -2.91 -0.02 2.71 16 32 H 0.17 2.00 8.06 -2.91 -0.02 1.98 16 33 H 0.21 0.97 8.06 -2.91 -0.02 0.95 16 34 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.07 1.12 8.10 -2.39 -0.02 1.10 16 36 H 0.12 0.71 8.14 -2.39 -0.02 0.69 16 37 H 0.12 4.11 7.62 -2.91 -0.02 4.09 16 Total: -1.00 -75.56 316.36 4.11 -71.44 By element: Atomic # 1 Polarization: 22.00 SS G_CDS: 0.48 Total: 22.48 kcal Atomic # 6 Polarization: -12.27 SS G_CDS: 5.39 Total: -6.88 kcal Atomic # 7 Polarization: -95.24 SS G_CDS: -3.72 Total: -98.96 kcal Atomic # 8 Polarization: -32.70 SS G_CDS: -0.06 Total: -32.76 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 2.03 Total: 44.68 kcal Total: -75.56 4.11 -71.44 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601022921.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.408 kcal (2) G-P(sol) polarization free energy of solvation -75.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.442 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds